RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 ZMYND15Q9H091 742 aa11.04□□□□□ -0.64
NUP88-213ENST00000576862 WASF2Q9Y6W5 498 aa11.04□□□□□ -0.64
NUP88-213ENST00000576862 ESPNB1AK53 854 aa11.03□□□□□ -0.64
NUP88-213ENST00000576862 DGAT1O75907 488 aa11.03□□□□□ -0.64
NUP88-213ENST00000576862 MCCD1P59942 119 aaPredicted RBP11.02□□□□□ -0.65
NUP88-213ENST00000576862 NR5A1Q13285 461 aa11.02□□□□□ -0.65
NUP88-213ENST00000576862 NNTQ13423 1086 aa11.02□□□□□ -0.65
NUP88-213ENST00000576862 NBPF20Q3BBV1 942 aa11.02□□□□□ -0.65
NUP88-213ENST00000576862 TRAK2O60296 914 aa11.01□□□□□ -0.65
NUP88-213ENST00000576862 GIGYF1O75420 1035 aaPredicted RBP11.01□□□□□ -0.65
NUP88-213ENST00000576862 AVPP01185 164 aa11.01□□□□□ -0.65
NUP88-213ENST00000576862 INTS6LQ5JSJ4 861 aaKnown RBP11.01□□□□□ -0.65
NUP88-213ENST00000576862 ADAMTS19Q8TE59 1207 aa11.01□□□□□ -0.65
NUP88-213ENST00000576862 ALG2Q9H553 416 aa11.01□□□□□ -0.65
NUP88-213ENST00000576862 PKDCCQ504Y2 493 aa11□□□□□ -0.65
NUP88-213ENST00000576862 C14orf37Q86TY3 774 aa11□□□□□ -0.65
NUP88-213ENST00000576862 KLF16Q9BXK1 252 aaPredicted RBP11□□□□□ -0.65
NUP88-213ENST00000576862 CEP126Q9P2H0 1117 aa11□□□□□ -0.65
NUP88-213ENST00000576862 SOX11P35716 441 aa10.99□□□□□ -0.65
NUP88-213ENST00000576862 ZNF592Q92610 1267 aa10.98□□□□□ -0.65
NUP88-213ENST00000576862 LCE2BO14633 110 aa10.97□□□□□ -0.65
NUP88-213ENST00000576862 SEMA3FQ13275 785 aa10.97□□□□□ -0.65
NUP88-213ENST00000576862 CCDC116Q8IYX3 515 aa10.97□□□□□ -0.65
NUP88-213ENST00000576862 RAB15P59190 212 aa10.96□□□□□ -0.65
NUP88-213ENST00000576862 MYT1Q01538 1121 aa10.96□□□□□ -0.65
NUP88-213ENST00000576862 SEPT12Q8IYM1 358 aa10.96□□□□□ -0.65
NUP88-213ENST00000576862 PHTF2Q8N3S3 785 aa10.96□□□□□ -0.65
NUP88-213ENST00000576862 ERVH48-1M5A8F1 160 aa10.95□□□□□ -0.66
NUP88-213ENST00000576862 TIMP2P16035 220 aa10.95□□□□□ -0.66
NUP88-213ENST00000576862 PPP1R26Q5T8A7 1209 aaPredicted RBP10.95□□□□□ -0.66
NUP88-213ENST00000576862 HDGFL1Q5TGJ6 251 aa10.95□□□□□ -0.66
NUP88-213ENST00000576862 Q6ZNB5 142 aa10.95□□□□□ -0.66
NUP88-213ENST00000576862 TIMELESSQ9UNS1 1208 aa10.95□□□□□ -0.66
NUP88-213ENST00000576862 WDR4P57081 412 aaKnown RBP10.94□□□□□ -0.66
NUP88-213ENST00000576862 CRIPAKQ8N1N5 446 aa10.94□□□□□ -0.66
NUP88-213ENST00000576862 ITPKCQ96DU7 683 aa10.94□□□□□ -0.66
NUP88-213ENST00000576862 TMPRSS4Q9NRS4 437 aa10.94□□□□□ -0.66
NUP88-213ENST00000576862 ZNF777Q9ULD5 760 aaPredicted RBP10.94□□□□□ -0.66
NUP88-213ENST00000576862 SMCPP49901 116 aaPredicted RBP10.93□□□□□ -0.66
NUP88-213ENST00000576862 GLMNQ92990 594 aa10.93□□□□□ -0.66
NUP88-213ENST00000576862 DHX9Q08211 1270 aaKnown RBP10.92□□□□□ -0.66
NUP88-213ENST00000576862 TSGA10IPQ3SY00 556 aa10.92□□□□□ -0.66
NUP88-213ENST00000576862 CCDC85AQ96PX6 553 aaPredicted RBP10.92□□□□□ -0.66
NUP88-213ENST00000576862 ZFAND3Q9H8U3 227 aa10.92□□□□□ -0.66
NUP88-213ENST00000576862 AAASQ9NRG9 546 aa10.92□□□□□ -0.66
NUP88-213ENST00000576862 EMILIN1Q9Y6C2 1016 aa10.92□□□□□ -0.66
NUP88-213ENST00000576862 PIK3CDO00329 1044 aa10.91□□□□□ -0.66
NUP88-213ENST00000576862 ST8SIA5O15466 376 aa10.91□□□□□ -0.66
NUP88-213ENST00000576862 ZIC2O95409 532 aaPredicted RBP10.91□□□□□ -0.66
NUP88-213ENST00000576862 CTC1Q2NKJ3 1217 aa10.91□□□□□ -0.66
NUP88-213ENST00000576862 RNF20Q5VTR2 975 aa10.91□□□□□ -0.66
NUP88-213ENST00000576862 CHIC2Q9UKJ5 165 aa10.91□□□□□ -0.66
NUP88-213ENST00000576862 ZNF784Q8NCA9 323 aaPredicted RBP10.9□□□□□ -0.66
NUP88-213ENST00000576862 UCN2Q96RP3 112 aa10.9□□□□□ -0.66
NUP88-213ENST00000576862 CAPN5O15484 640 aaPredicted RBP10.89□□□□□ -0.67
NUP88-213ENST00000576862 SLFNL1Q499Z3 407 aa10.89□□□□□ -0.67
NUP88-213ENST00000576862 RNF135Q8IUD6 432 aa10.89□□□□□ -0.67
NUP88-213ENST00000576862 AXIN1O15169 862 aa10.88□□□□□ -0.67
NUP88-213ENST00000576862 LILRA1O75019 489 aa10.88□□□□□ -0.67
NUP88-213ENST00000576862 TRAF7Q6Q0C0 670 aa10.88□□□□□ -0.67
NUP88-213ENST00000576862 CCDC125Q86Z20 511 aa10.88□□□□□ -0.67
NUP88-213ENST00000576862 CDCA7Q9BWT1 371 aaPredicted RBP10.88□□□□□ -0.67
NUP88-213ENST00000576862 PGPEP1Q9NXJ5 209 aa10.88□□□□□ -0.67
NUP88-213ENST00000576862 PCDHB11Q9Y5F2 797 aa10.88□□□□□ -0.67
NUP88-213ENST00000576862 ERICH6Q7L0X2 663 aa10.87□□□□□ -0.67
NUP88-213ENST00000576862 CALR3Q96L12 384 aaKnown RBP10.87□□□□□ -0.67
NUP88-213ENST00000576862 DACH1Q9UI36 760 aa10.87□□□□□ -0.67
NUP88-213ENST00000576862 ADD1P35611 737 aaKnown RBP10.86□□□□□ -0.67
NUP88-213ENST00000576862 SCTRP47872 440 aa10.86□□□□□ -0.67
NUP88-213ENST00000576862 CBLBQ13191 982 aa10.86□□□□□ -0.67
NUP88-213ENST00000576862 CYLDQ9NQC7 956 aa10.86□□□□□ -0.67
NUP88-213ENST00000576862 ERVK-9P63128 1117 aa10.85□□□□□ -0.67
NUP88-213ENST00000576862 Q6ZVU0 165 aa10.85□□□□□ -0.67
NUP88-213ENST00000576862 PLPP7Q8NBV4 271 aa10.85□□□□□ -0.67
NUP88-213ENST00000576862 TBC1D9Q6ZT07 1266 aa10.84□□□□□ -0.67
NUP88-213ENST00000576862 NFATC2IPQ8NCF5 419 aa10.84□□□□□ -0.67
NUP88-213ENST00000576862 DOLKQ9UPQ8 538 aa10.84□□□□□ -0.67
NUP88-213ENST00000576862 ARID3CA6NKF2 412 aa10.83□□□□□ -0.68
NUP88-213ENST00000576862 MEIOBQ8N635 442 aa10.83□□□□□ -0.68
NUP88-213ENST00000576862 SKIP12755 728 aa10.82□□□□□ -0.68
NUP88-213ENST00000576862 BMP1P13497 986 aa10.82□□□□□ -0.68
NUP88-213ENST00000576862 MAP7D1Q3KQU3 841 aa10.82□□□□□ -0.68
NUP88-213ENST00000576862 CC2D2BQ6DHV5 1058 aa10.82□□□□□ -0.68
NUP88-213ENST00000576862 TRIM46Q7Z4K8 759 aa10.82□□□□□ -0.68
NUP88-213ENST00000576862 KDF1Q8NAX2 398 aaPredicted RBP10.81□□□□□ -0.68
NUP88-213ENST00000576862 ATP13A2Q9NQ11 1180 aa10.81□□□□□ -0.68
NUP88-213ENST00000576862 ATP9BO43861 1147 aa10.8□□□□□ -0.68
NUP88-213ENST00000576862 OXLD1Q5BKU9 147 aa10.8□□□□□ -0.68
NUP88-213ENST00000576862 MRPL14Q6P1L8 145 aaKnown RBP10.8□□□□□ -0.68
NUP88-213ENST00000576862 OSBPL3Q9H4L5 887 aa10.8□□□□□ -0.68
NUP88-213ENST00000576862 C1orf115Q9H7X2 142 aa10.8□□□□□ -0.68
NUP88-213ENST00000576862 AGBL1Q96MI9 1066 aa10.79□□□□□ -0.68
NUP88-213ENST00000576862 PPP1R12CQ9BZL4 782 aa10.79□□□□□ -0.68
NUP88-213ENST00000576862 TFIP11Q9UBB9 837 aaKnown RBP10.79□□□□□ -0.68
NUP88-213ENST00000576862 USP17L5A8MUK1 530 aa10.78□□□□□ -0.68
NUP88-213ENST00000576862 ADH1AP07327 375 aa10.78□□□□□ -0.68
NUP88-213ENST00000576862 LINC00528Q8N1L1 170 aa10.78□□□□□ -0.68
NUP88-213ENST00000576862 DEPDC4Q8N2C3 294 aa10.78□□□□□ -0.68
NUP88-213ENST00000576862 PALM3A6NDB9 673 aaPredicted RBP10.77□□□□□ -0.69
NUP88-213ENST00000576862 USP4Q13107 963 aa10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms