RNA–Protein interactions for RNA: ENST00000568139.5

CLK3-221, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 918 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-221ENST00000568139 ZNF692Q9BU19 519 aaPredicted RBP25.33■■□□□ 1.65
CLK3-221ENST00000568139 AKAP12Q02952 1782 aa25.32■■□□□ 1.64
CLK3-221ENST00000568139 ARHGEF25Q86VW2 580 aa25.32■■□□□ 1.64
CLK3-221ENST00000568139 SPON1Q9HCB6 807 aa25.32■■□□□ 1.64
CLK3-221ENST00000568139 TTC21BQ7Z4L5 1316 aa25.32■■□□□ 1.64
CLK3-221ENST00000568139 RGPD5Q99666 1765 aa25.31■■□□□ 1.64
CLK3-221ENST00000568139 CPSF1Q10570 1443 aaKnown RBP25.31■■□□□ 1.64
CLK3-221ENST00000568139 KCNQ2O43526 872 aa25.31■■□□□ 1.64
CLK3-221ENST00000568139 KCNH5Q8NCM2 988 aa25.3■■□□□ 1.64
CLK3-221ENST00000568139 CDCA7Q9BWT1 371 aaPredicted RBP25.3■■□□□ 1.64
CLK3-221ENST00000568139 BCL11BQ9C0K0 894 aaPredicted RBP25.3■■□□□ 1.64
CLK3-221ENST00000568139 BCL9O00512 1426 aa25.29■■□□□ 1.64
CLK3-221ENST00000568139 PTF1AQ7RTS3 328 aa25.28■■□□□ 1.64
CLK3-221ENST00000568139 MARCH10Q8NA82 808 aaPredicted RBP25.28■■□□□ 1.64
CLK3-221ENST00000568139 TTC21AQ8NDW8 1320 aa25.28■■□□□ 1.64
CLK3-221ENST00000568139 CARD10Q9BWT7 1032 aa25.27■■□□□ 1.64
CLK3-221ENST00000568139 SIN3AQ96ST3 1273 aa25.25■■□□□ 1.63
CLK3-221ENST00000568139 ANO8Q9HCE9 1232 aaPredicted RBP25.25■■□□□ 1.63
CLK3-221ENST00000568139 PPP1R1BQ9UD71 204 aaPredicted RBP25.25■■□□□ 1.63
CLK3-221ENST00000568139 ROCK2O75116 1388 aaKnown RBP25.25■■□□□ 1.63
CLK3-221ENST00000568139 PROM2Q8N271 834 aa25.24■■□□□ 1.63
CLK3-221ENST00000568139 NFAT5O94916 1531 aa25.23■■□□□ 1.63
CLK3-221ENST00000568139 CASZ1Q86V15 1759 aa25.23■■□□□ 1.63
CLK3-221ENST00000568139 NINLQ9Y2I6 1382 aa25.22■■□□□ 1.63
CLK3-221ENST00000568139 CSB-PGBD3P0DP91 1061 aa25.22■■□□□ 1.63
CLK3-221ENST00000568139 SOX12O15370 315 aa25.21■■□□□ 1.63
CLK3-221ENST00000568139 KTN1Q86UP2 1357 aaKnown RBP25.2■■□□□ 1.63
CLK3-221ENST00000568139 EXOC5O00471 708 aa25.2■■□□□ 1.62
CLK3-221ENST00000568139 YY1P25490 414 aa25.2■■□□□ 1.62
CLK3-221ENST00000568139 ABCC6O95255 1503 aa25.2■■□□□ 1.62
CLK3-221ENST00000568139 MON2Q7Z3U7 1717 aa25.19■■□□□ 1.62
CLK3-221ENST00000568139 CCDC7Q96M83 1385 aa25.18■■□□□ 1.62
CLK3-221ENST00000568139 NEUROD1Q13562 356 aa25.17■■□□□ 1.62
CLK3-221ENST00000568139 PDGFDQ9GZP0 370 aaPredicted RBP25.16■■□□□ 1.62
CLK3-221ENST00000568139 USP31Q70CQ4 1352 aa25.16■■□□□ 1.62
CLK3-221ENST00000568139 TXNRD1Q16881 649 aa25.15■■□□□ 1.62
CLK3-221ENST00000568139 USP54Q70EL1 1684 aa25.15■■□□□ 1.62
CLK3-221ENST00000568139 SBNO2Q9Y2G9 1366 aa25.15■■□□□ 1.62
CLK3-221ENST00000568139 DCAF8L1A6NGE4 600 aa25.14■■□□□ 1.62
CLK3-221ENST00000568139 TNS2Q63HR2 1409 aa25.13■■□□□ 1.61
CLK3-221ENST00000568139 SUGP2Q8IX01 1082 aaKnown RBP eCLIP25.12■■□□□ 1.61
CLK3-221ENST00000568139 CD163L1Q9NR16 1453 aa25.11■■□□□ 1.61
CLK3-221ENST00000568139 STK32BQ9NY57 414 aa25.11■■□□□ 1.61
CLK3-221ENST00000568139 ERBB3P21860 1342 aa25.11■■□□□ 1.61
CLK3-221ENST00000568139 ZBTB7AO95365 584 aa25.1■■□□□ 1.61
CLK3-221ENST00000568139 PTGER2P43116 358 aa25.1■■□□□ 1.61
CLK3-221ENST00000568139 SLC15A2Q16348 729 aa25.1■■□□□ 1.61
CLK3-221ENST00000568139 NHSQ6T4R5 1651 aa25.1■■□□□ 1.61
CLK3-221ENST00000568139 LTN1O94822 1766 aa25.09■■□□□ 1.61
CLK3-221ENST00000568139 NME9Q86XW9 330 aa25.08■■□□□ 1.61
CLK3-221ENST00000568139 MYOM1P52179 1685 aa25.07■■□□□ 1.6
CLK3-221ENST00000568139 NLRP2Q9NX02 1062 aa25.07■■□□□ 1.6
CLK3-221ENST00000568139 ATF5Q9Y2D1 282 aaPredicted RBP25.07■■□□□ 1.6
CLK3-221ENST00000568139 IL2RBP14784 551 aa25.05■■□□□ 1.6
CLK3-221ENST00000568139 CARD11Q9BXL7 1154 aa25.05■■□□□ 1.6
CLK3-221ENST00000568139 KAT6BQ8WYB5 2073 aa25.05■■□□□ 1.6
CLK3-221ENST00000568139 HDGFL2Q7Z4V5 671 aaPredicted RBP25.04■■□□□ 1.6
CLK3-221ENST00000568139 ACSBG1Q96GR2 724 aa25.04■■□□□ 1.6
CLK3-221ENST00000568139 SLC12A5Q9H2X9 1139 aa25.04■■□□□ 1.6
CLK3-221ENST00000568139 TMC1Q8TDI8 760 aa25.03■■□□□ 1.6
CLK3-221ENST00000568139 EDC4Q6P2E9 1401 aaKnown RBP25.03■■□□□ 1.6
CLK3-221ENST00000568139 ANKRD24Q8TF21 1146 aa25.02■■□□□ 1.6
CLK3-221ENST00000568139 SGIP1Q9BQI5 828 aa25.02■■□□□ 1.6
CLK3-221ENST00000568139 MTFR1LQ9H019 292 aa25.02■■□□□ 1.6
CLK3-221ENST00000568139 BTAF1O14981 1849 aa25.02■■□□□ 1.6
CLK3-221ENST00000568139 PAPPAQ13219 1627 aa25.01■■□□□ 1.59
CLK3-221ENST00000568139 PUS7Q96PZ0 661 aaKnown RBP25■■□□□ 1.59
CLK3-221ENST00000568139 SYT17Q9BSW7 474 aa24.99■■□□□ 1.59
CLK3-221ENST00000568139 FHDC1Q9C0D6 1143 aaPredicted RBP24.98■■□□□ 1.59
CLK3-221ENST00000568139 TERF2IPQ9NYB0 399 aa24.98■■□□□ 1.59
CLK3-221ENST00000568139 A0A1W2PP64 1363 aa24.97■■□□□ 1.59
CLK3-221ENST00000568139 IP6K1Q92551 441 aa24.96■■□□□ 1.59
CLK3-221ENST00000568139 LRRC4BQ9NT99 713 aa24.94■■□□□ 1.58
CLK3-221ENST00000568139 FAM208AQ9UK61 1670 aaKnown RBP24.93■■□□□ 1.58
CLK3-221ENST00000568139 ZNF827Q17R98 1081 aa24.92■■□□□ 1.58
CLK3-221ENST00000568139 CHD4Q14839 1912 aa24.91■■□□□ 1.58
CLK3-221ENST00000568139 ARXQ96QS3 562 aa24.91■■□□□ 1.58
CLK3-221ENST00000568139 DDX54Q8TDD1 881 aaKnown RBP24.89■■□□□ 1.58
CLK3-221ENST00000568139 AKT1S1Q96B36 256 aa24.89■■□□□ 1.58
CLK3-221ENST00000568139 MAP3K5Q99683 1374 aa24.89■■□□□ 1.57
CLK3-221ENST00000568139 QSER1Q2KHR3 1735 aa24.89■■□□□ 1.57
CLK3-221ENST00000568139 SLC27A3Q5K4L6 730 aa24.88■■□□□ 1.57
CLK3-221ENST00000568139 ZNF784Q8NCA9 323 aaPredicted RBP24.88■■□□□ 1.57
CLK3-221ENST00000568139 LTV1Q96GA3 475 aaPredicted RBP24.88■■□□□ 1.57
CLK3-221ENST00000568139 TESK2Q96S53 571 aa24.88■■□□□ 1.57
CLK3-221ENST00000568139 TONSLQ96HA7 1378 aa24.88■■□□□ 1.57
CLK3-221ENST00000568139 UTRNP46939 3433 aa24.87■■□□□ 1.57
CLK3-221ENST00000568139 MAP3K19Q56UN5 1328 aa24.86■■□□□ 1.57
CLK3-221ENST00000568139 SLC16A10Q8TF71 515 aa24.85■■□□□ 1.57
CLK3-221ENST00000568139 COG3Q96JB2 828 aa24.85■■□□□ 1.57
CLK3-221ENST00000568139 COL24A1Q17RW2 1714 aa24.84■■□□□ 1.57
CLK3-221ENST00000568139 HOXC9P31274 260 aa24.84■■□□□ 1.57
CLK3-221ENST00000568139 RGPD2P0DJD1 1756 aa24.84■■□□□ 1.57
CLK3-221ENST00000568139 ST20-MTHFSA0A0A6YYL1 179 aa24.83■■□□□ 1.57
CLK3-221ENST00000568139 ANKRD36BQ8N2N9 1353 aa24.82■■□□□ 1.56
CLK3-221ENST00000568139 LY75O60449 1722 aa24.82■■□□□ 1.56
CLK3-221ENST00000568139 SLC24A1O60721 1099 aa24.82■■□□□ 1.56
CLK3-221ENST00000568139 FBLN1P23142 703 aa24.82■■□□□ 1.56
CLK3-221ENST00000568139 PRIM1P49642 420 aaKnown RBP24.82■■□□□ 1.56
CLK3-221ENST00000568139 SHANK3Q9BYB0 1731 aa24.82■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 103.5 ms