RNA–Protein interactions for RNA: ENST00000563790.5

HDGFL3-204, Transcript of HDGF like 3, humanhuman

TSL 3

Gene HDGFL3, Length 934 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDGFL3-204ENST00000563790 DAPK1P53355 1430 aa17.12■□□□□ 0.33
HDGFL3-204ENST00000563790 KNDC1Q76NI1 1749 aa17.1■□□□□ 0.33
HDGFL3-204ENST00000563790 CHRNA2Q15822 529 aa17.09■□□□□ 0.33
HDGFL3-204ENST00000563790 ZNF827Q17R98 1081 aa17.09■□□□□ 0.33
HDGFL3-204ENST00000563790 C16orf71Q8IYS4 520 aaPredicted RBP17.09■□□□□ 0.33
HDGFL3-204ENST00000563790 LMO7Q8WWI1 1683 aa17.09■□□□□ 0.33
HDGFL3-204ENST00000563790 FOXN1O15353 648 aa17.08■□□□□ 0.32
HDGFL3-204ENST00000563790 LARP1Q6PKG0 1096 aaKnown RBP17.07■□□□□ 0.32
HDGFL3-204ENST00000563790 NHSQ6T4R5 1651 aa17.07■□□□□ 0.32
HDGFL3-204ENST00000563790 EVA1CP58658 441 aa17.06■□□□□ 0.32
HDGFL3-204ENST00000563790 TNRC6CQ9HCJ0 1690 aaKnown RBP17.06■□□□□ 0.32
HDGFL3-204ENST00000563790 BTAF1O14981 1849 aa17.05■□□□□ 0.32
HDGFL3-204ENST00000563790 C10orf71Q711Q0 1435 aa17.04■□□□□ 0.32
HDGFL3-204ENST00000563790 WAPLQ7Z5K2 1190 aa17.03■□□□□ 0.32
HDGFL3-204ENST00000563790 CD2APQ9Y5K6 639 aa17.03■□□□□ 0.32
HDGFL3-204ENST00000563790 ANKRD50Q9ULJ7 1429 aa17.02■□□□□ 0.31
HDGFL3-204ENST00000563790 PKD1L3Q7Z443 1732 aa17.01■□□□□ 0.31
HDGFL3-204ENST00000563790 PNPLA7Q6ZV29 1317 aa17.01■□□□□ 0.31
HDGFL3-204ENST00000563790 CCDC85CA6NKD9 419 aa17■□□□□ 0.31
HDGFL3-204ENST00000563790 CTCFP49711 727 aaPredicted RBP17■□□□□ 0.31
HDGFL3-204ENST00000563790 DDB1Q16531 1140 aa17■□□□□ 0.31
HDGFL3-204ENST00000563790 PPLO60437 1756 aa17■□□□□ 0.31
HDGFL3-204ENST00000563790 AKT1S1Q96B36 256 aa16.99■□□□□ 0.31
HDGFL3-204ENST00000563790 CHIC2Q9UKJ5 165 aa16.99■□□□□ 0.31
HDGFL3-204ENST00000563790 PIK3C2AO00443 1686 aa16.99■□□□□ 0.31
HDGFL3-204ENST00000563790 BRD4O60885 1362 aaPredicted RBP16.99■□□□□ 0.31
HDGFL3-204ENST00000563790 PXDNLA1KZ92 1463 aa16.99■□□□□ 0.31
HDGFL3-204ENST00000563790 MARCH10Q8NA82 808 aaPredicted RBP16.98■□□□□ 0.31
HDGFL3-204ENST00000563790 PLEKHH1Q9ULM0 1364 aa16.98■□□□□ 0.31
HDGFL3-204ENST00000563790 VIRMAQ69YN4 1812 aaKnown RBP16.98■□□□□ 0.31
HDGFL3-204ENST00000563790 SMC1BQ8NDV3 1235 aa16.97■□□□□ 0.31
HDGFL3-204ENST00000563790 VGFO15240 615 aaPredicted RBP16.96■□□□□ 0.31
HDGFL3-204ENST00000563790 GPRASP1Q5JY77 1395 aa16.94■□□□□ 0.3
HDGFL3-204ENST00000563790 ZC3H6P61129 1189 aaKnown RBP16.94■□□□□ 0.3
HDGFL3-204ENST00000563790 TRPM1Q7Z4N2 1603 aa16.94■□□□□ 0.3
HDGFL3-204ENST00000563790 CRB1P82279 1406 aa16.94■□□□□ 0.3
HDGFL3-204ENST00000563790 LRRC4BQ9NT99 713 aa16.93■□□□□ 0.3
HDGFL3-204ENST00000563790 COL5A2P05997 1499 aaPredicted RBP16.93■□□□□ 0.3
HDGFL3-204ENST00000563790 IGSF1Q8N6C5 1336 aa16.92■□□□□ 0.3
HDGFL3-204ENST00000563790 LBX1P52954 281 aa16.91■□□□□ 0.3
HDGFL3-204ENST00000563790 ABCC11Q96J66 1382 aa16.9■□□□□ 0.3
HDGFL3-204ENST00000563790 ANKRD30BQ9BXX2 1392 aa16.9■□□□□ 0.3
HDGFL3-204ENST00000563790 ANKARQ7Z5J8 1434 aa16.9■□□□□ 0.3
HDGFL3-204ENST00000563790 PRPF38BQ5VTL8 546 aaKnown RBP16.9■□□□□ 0.3
HDGFL3-204ENST00000563790 AIDAQ96BJ3 306 aa16.9■□□□□ 0.3
HDGFL3-204ENST00000563790 ACIN1Q9UKV3 1341 aaKnown RBP16.9■□□□□ 0.3
HDGFL3-204ENST00000563790 SBF1O95248 1867 aa16.88■□□□□ 0.29
HDGFL3-204ENST00000563790 KCPQ6ZWJ8 1503 aa16.88■□□□□ 0.29
HDGFL3-204ENST00000563790 PLEKHG2Q9H7P9 1386 aa16.88■□□□□ 0.29
HDGFL3-204ENST00000563790 TFCP2L1Q9NZI6 479 aa16.87■□□□□ 0.29
HDGFL3-204ENST00000563790 STK26Q9P289 416 aa16.87■□□□□ 0.29
HDGFL3-204ENST00000563790 CPDO75976 1380 aa16.87■□□□□ 0.29
HDGFL3-204ENST00000563790 KDM2BQ8NHM5 1336 aa16.86■□□□□ 0.29
HDGFL3-204ENST00000563790 QRICH2Q9H0J4 1663 aa16.85■□□□□ 0.29
HDGFL3-204ENST00000563790 COL18A1P39060 1754 aa16.84■□□□□ 0.29
HDGFL3-204ENST00000563790 LY75O60449 1722 aa16.84■□□□□ 0.29
HDGFL3-204ENST00000563790 BRCA1P38398 1863 aaKnown RBP16.84■□□□□ 0.29
HDGFL3-204ENST00000563790 RRAGCQ9HB90 399 aa16.83■□□□□ 0.28
HDGFL3-204ENST00000563790 ARFGEF1Q9Y6D6 1849 aa16.83■□□□□ 0.28
HDGFL3-204ENST00000563790 KIF13BQ9NQT8 1826 aa16.82■□□□□ 0.28
HDGFL3-204ENST00000563790 KIAA1551Q9HCM1 1747 aa16.82■□□□□ 0.28
HDGFL3-204ENST00000563790 PAK3O75914 559 aaPredicted RBP16.82■□□□□ 0.28
HDGFL3-204ENST00000563790 CDCA7Q9BWT1 371 aaPredicted RBP16.82■□□□□ 0.28
HDGFL3-204ENST00000563790 MKRN1Q9UHC7 482 aaKnown RBP16.82■□□□□ 0.28
HDGFL3-204ENST00000563790 N4BP2Q86UW6 1770 aaPredicted RBP16.82■□□□□ 0.28
HDGFL3-204ENST00000563790 SLC27A3Q5K4L6 730 aa16.81■□□□□ 0.28
HDGFL3-204ENST00000563790 HSPA8P11142 646 aaKnown RBP16.8■□□□□ 0.28
HDGFL3-204ENST00000563790 HIRIP3Q9BW71 556 aaPredicted RBP16.8■□□□□ 0.28
HDGFL3-204ENST00000563790 WBP1LQ9NX94 342 aa16.8■□□□□ 0.28
HDGFL3-204ENST00000563790 USP6P35125 1406 aa16.79■□□□□ 0.28
HDGFL3-204ENST00000563790 MSL1Q68DK7 614 aa16.79■□□□□ 0.28
HDGFL3-204ENST00000563790 DLL1O00548 723 aa16.78■□□□□ 0.28
HDGFL3-204ENST00000563790 CREBZFQ9NS37 354 aa16.78■□□□□ 0.28
HDGFL3-204ENST00000563790 RPGRIP1LQ68CZ1 1315 aa16.77■□□□□ 0.28
HDGFL3-204ENST00000563790 ITSN1Q15811 1721 aa16.77■□□□□ 0.28
HDGFL3-204ENST00000563790 SIRT1Q96EB6 747 aa16.77■□□□□ 0.28
HDGFL3-204ENST00000563790 USP54Q70EL1 1684 aa16.77■□□□□ 0.28
HDGFL3-204ENST00000563790 CNTNAP1P78357 1384 aa16.77■□□□□ 0.27
HDGFL3-204ENST00000563790 COL23A1Q86Y22 540 aaPredicted RBP16.76■□□□□ 0.27
HDGFL3-204ENST00000563790 CFAP44Q96MT7 982 aa16.76■□□□□ 0.27
HDGFL3-204ENST00000563790 RGPD5Q99666 1765 aa16.76■□□□□ 0.27
HDGFL3-204ENST00000563790 CASP8AP2Q9UKL3 1982 aa16.75■□□□□ 0.27
HDGFL3-204ENST00000563790 SZT2Q5T011 3432 aa16.75■□□□□ 0.27
HDGFL3-204ENST00000563790 YTHDC2Q9H6S0 1430 aaKnown RBP16.74■□□□□ 0.27
HDGFL3-204ENST00000563790 ACSBG1Q96GR2 724 aa16.74■□□□□ 0.27
HDGFL3-204ENST00000563790 NUP155O75694 1391 aa16.74■□□□□ 0.27
HDGFL3-204ENST00000563790 C9orf131Q5VYM1 1079 aa16.73■□□□□ 0.27
HDGFL3-204ENST00000563790 ABCC6O95255 1503 aa16.73■□□□□ 0.27
HDGFL3-204ENST00000563790 VPS8Q8N3P4 1428 aa16.71■□□□□ 0.27
HDGFL3-204ENST00000563790 EXOC5O00471 708 aa16.71■□□□□ 0.27
HDGFL3-204ENST00000563790 COL6A3P12111 3177 aa16.71■□□□□ 0.26
HDGFL3-204ENST00000563790 KANK4Q5T7N3 995 aaPredicted RBP16.7■□□□□ 0.26
HDGFL3-204ENST00000563790 ARHGAP27Q6ZUM4 889 aa16.7■□□□□ 0.26
HDGFL3-204ENST00000563790 TOM1L2Q6ZVM7 507 aa16.7■□□□□ 0.26
HDGFL3-204ENST00000563790 NGDNQ8NEJ9 315 aaKnown RBP16.7■□□□□ 0.26
HDGFL3-204ENST00000563790 GCC1Q96CN9 775 aa16.7■□□□□ 0.26
HDGFL3-204ENST00000563790 TAF1LQ8IZX4 1826 aa16.69■□□□□ 0.26
HDGFL3-204ENST00000563790 NUTM2GQ5VZR2 741 aa16.69■□□□□ 0.26
HDGFL3-204ENST00000563790 TMEM132EQ6IEE7 984 aa16.69■□□□□ 0.26
HDGFL3-204ENST00000563790 CCDC88AQ3V6T2 1871 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms