RNA–Protein interactions for RNA: ENST00000563410.1

CHD9-208, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 2

Gene CHD9, Length 488 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-208ENST00000563410 NUP188Q5SRE5 1749 aa29.88■■■□□ 2.37
CHD9-208ENST00000563410 CARD11Q9BXL7 1154 aa29.88■■■□□ 2.37
CHD9-208ENST00000563410 PARD3Q8TEW0 1356 aa29.88■■■□□ 2.37
CHD9-208ENST00000563410 NFAT5O94916 1531 aa29.87■■■□□ 2.37
CHD9-208ENST00000563410 KCNH5Q8NCM2 988 aa29.87■■■□□ 2.37
CHD9-208ENST00000563410 WDR17Q8IZU2 1322 aa29.86■■■□□ 2.37
CHD9-208ENST00000563410 TOM1L2Q6ZVM7 507 aa29.85■■■□□ 2.37
CHD9-208ENST00000563410 CD163L1Q9NR16 1453 aa29.85■■■□□ 2.37
CHD9-208ENST00000563410 USP54Q70EL1 1684 aa29.85■■■□□ 2.37
CHD9-208ENST00000563410 SOX12O15370 315 aa29.83■■■□□ 2.37
CHD9-208ENST00000563410 OVOS2A0A0G2JMS6 1433 aa29.81■■■□□ 2.36
CHD9-208ENST00000563410 OVOS2A0A0J9YW53 1432 aa29.81■■■□□ 2.36
CHD9-208ENST00000563410 OVOS2Q6IE36 1432 aa29.81■■■□□ 2.36
CHD9-208ENST00000563410 TONSLQ96HA7 1378 aa29.81■■■□□ 2.36
CHD9-208ENST00000563410 C11orf95C9JLR9 678 aaPredicted RBP29.79■■■□□ 2.36
CHD9-208ENST00000563410 DDB1Q16531 1140 aa29.79■■■□□ 2.36
CHD9-208ENST00000563410 USP31Q70CQ4 1352 aa29.78■■■□□ 2.36
CHD9-208ENST00000563410 ABCC6O95255 1503 aa29.78■■■□□ 2.36
CHD9-208ENST00000563410 SUGP2Q8IX01 1082 aaKnown RBP eCLIP29.77■■■□□ 2.369e-7■■□□□ 12.9
CHD9-208ENST00000563410 RGPD3A6NKT7 1758 aaPredicted RBP29.77■■■□□ 2.36
CHD9-208ENST00000563410 LTN1O94822 1766 aa29.77■■■□□ 2.36
CHD9-208ENST00000563410 RGPD4Q7Z3J3 1758 aa29.77■■■□□ 2.36
CHD9-208ENST00000563410 CARD10Q9BWT7 1032 aa29.76■■■□□ 2.35
CHD9-208ENST00000563410 NME9Q86XW9 330 aa29.74■■■□□ 2.35
CHD9-208ENST00000563410 TMC1Q8TDI8 760 aa29.74■■■□□ 2.35
CHD9-208ENST00000563410 CDCA7Q9BWT1 371 aaPredicted RBP29.74■■■□□ 2.35
CHD9-208ENST00000563410 SLC12A5Q9H2X9 1139 aa29.74■■■□□ 2.35
CHD9-208ENST00000563410 MARCH10Q8NA82 808 aaPredicted RBP29.73■■■□□ 2.35
CHD9-208ENST00000563410 CSB-PGBD3P0DP91 1061 aa29.72■■■□□ 2.35
CHD9-208ENST00000563410 PTF1AQ7RTS3 328 aa29.7■■■□□ 2.35
CHD9-208ENST00000563410 HDGFL2Q7Z4V5 671 aaPredicted RBP29.7■■■□□ 2.35
CHD9-208ENST00000563410 BCL9O00512 1426 aa29.7■■■□□ 2.34
CHD9-208ENST00000563410 EDC4Q6P2E9 1401 aaKnown RBP29.7■■■□□ 2.34
CHD9-208ENST00000563410 A0A1W2PP64 1363 aa29.69■■■□□ 2.34
CHD9-208ENST00000563410 PUS7Q96PZ0 661 aaKnown RBP29.69■■■□□ 2.34
CHD9-208ENST00000563410 CCDC7Q96M83 1385 aa29.68■■■□□ 2.34
CHD9-208ENST00000563410 PLSCR1O15162 318 aa29.68■■■□□ 2.34
CHD9-208ENST00000563410 NBPF14Q5TI25 921 aa29.68■■■□□ 2.34
CHD9-208ENST00000563410 TESK2Q96S53 571 aa29.67■■■□□ 2.34
CHD9-208ENST00000563410 BCL11BQ9C0K0 894 aaPredicted RBP29.67■■■□□ 2.34
CHD9-208ENST00000563410 ERBB3P21860 1342 aa29.65■■■□□ 2.34
CHD9-208ENST00000563410 TERF2IPQ9NYB0 399 aa29.64■■■□□ 2.34
CHD9-208ENST00000563410 ST20-MTHFSA0A0A6YYL1 179 aa29.63■■■□□ 2.33
CHD9-208ENST00000563410 EXOC5O00471 708 aa29.63■■■□□ 2.33
CHD9-208ENST00000563410 TNS2Q63HR2 1409 aa29.62■■■□□ 2.33
CHD9-208ENST00000563410 TRIM26Q12899 539 aaPredicted RBP29.58■■■□□ 2.33
CHD9-208ENST00000563410 PROM2Q8N271 834 aa29.58■■■□□ 2.33
CHD9-208ENST00000563410 NLRP2Q9NX02 1062 aa29.58■■■□□ 2.33
CHD9-208ENST00000563410 NINLQ9Y2I6 1382 aa29.58■■■□□ 2.33
CHD9-208ENST00000563410 ANKRD24Q8TF21 1146 aa29.57■■■□□ 2.32
CHD9-208ENST00000563410 ANO8Q9HCE9 1232 aaPredicted RBP29.57■■■□□ 2.32
CHD9-208ENST00000563410 NHSQ6T4R5 1651 aa29.56■■■□□ 2.32
CHD9-208ENST00000563410 CASZ1Q86V15 1759 aa29.55■■■□□ 2.32
CHD9-208ENST00000563410 KAT6BQ8WYB5 2073 aa29.55■■■□□ 2.32
CHD9-208ENST00000563410 KCNQ2O43526 872 aa29.52■■■□□ 2.32
CHD9-208ENST00000563410 IL2RBP14784 551 aa29.52■■■□□ 2.32
CHD9-208ENST00000563410 FAM208AQ9UK61 1670 aaKnown RBP29.52■■■□□ 2.32
CHD9-208ENST00000563410 SLC24A1O60721 1099 aa29.51■■■□□ 2.31
CHD9-208ENST00000563410 IP6K1Q92551 441 aa29.51■■■□□ 2.31
CHD9-208ENST00000563410 SPON1Q9HCB6 807 aa29.5■■■□□ 2.31
CHD9-208ENST00000563410 BTAF1O14981 1849 aa29.48■■■□□ 2.31
CHD9-208ENST00000563410 TXNRD1Q16881 649 aa29.48■■■□□ 2.31
CHD9-208ENST00000563410 RGPD2P0DJD1 1756 aa29.48■■■□□ 2.31
CHD9-208ENST00000563410 ANKRD36BQ8N2N9 1353 aa29.48■■■□□ 2.31
CHD9-208ENST00000563410 ACSBG1Q96GR2 724 aa29.47■■■□□ 2.31
CHD9-208ENST00000563410 COG3Q96JB2 828 aa29.46■■■□□ 2.31
CHD9-208ENST00000563410 USP47Q96K76 1375 aa29.46■■■□□ 2.31
CHD9-208ENST00000563410 FBLN1P23142 703 aa29.45■■■□□ 2.31
CHD9-208ENST00000563410 PDGFDQ9GZP0 370 aaPredicted RBP29.45■■■□□ 2.31
CHD9-208ENST00000563410 MAP3K19Q56UN5 1328 aa29.45■■■□□ 2.3
CHD9-208ENST00000563410 TMF1P82094 1093 aa29.42■■■□□ 2.3
CHD9-208ENST00000563410 LTV1Q96GA3 475 aaPredicted RBP29.42■■■□□ 2.3
CHD9-208ENST00000563410 HOXC9P31274 260 aa29.41■■■□□ 2.3
CHD9-208ENST00000563410 PPP1R1BQ9UD71 204 aaPredicted RBP29.4■■■□□ 2.3
CHD9-208ENST00000563410 PAPPAQ13219 1627 aa29.39■■■□□ 2.3
CHD9-208ENST00000563410 SLC15A2Q16348 729 aa29.39■■■□□ 2.3
CHD9-208ENST00000563410 STK32BQ9NY57 414 aa29.39■■■□□ 2.3
CHD9-208ENST00000563410 SHANK3Q9BYB0 1731 aa29.39■■■□□ 2.3
CHD9-208ENST00000563410 KIF20BQ96Q89 1820 aa29.38■■■□□ 2.29
CHD9-208ENST00000563410 FYB1O15117 783 aa29.38■■■□□ 2.29
CHD9-208ENST00000563410 AMPHP49418 695 aa29.37■■■□□ 2.29
CHD9-208ENST00000563410 MYOM1P52179 1685 aa29.35■■■□□ 2.29
CHD9-208ENST00000563410 ZBTB7AO95365 584 aa29.35■■■□□ 2.29
CHD9-208ENST00000563410 GGNBP2Q9H3C7 697 aa29.35■■■□□ 2.29
CHD9-208ENST00000563410 RTL1A6NKG5 1358 aa29.34■■■□□ 2.29
CHD9-208ENST00000563410 RRS1Q15050 365 aaKnown RBP29.33■■■□□ 2.29
CHD9-208ENST00000563410 DDX54Q8TDD1 881 aaKnown RBP29.33■■■□□ 2.29
CHD9-208ENST00000563410 DOT1LQ8TEK3 1739 aa29.32■■■□□ 2.28
CHD9-208ENST00000563410 PTGER2P43116 358 aa29.32■■■□□ 2.28
CHD9-208ENST00000563410 MEGF6O75095 1541 aa29.31■■■□□ 2.28
CHD9-208ENST00000563410 LRRC4BQ9NT99 713 aa29.29■■■□□ 2.28
CHD9-208ENST00000563410 ATF5Q9Y2D1 282 aaPredicted RBP29.29■■■□□ 2.28
CHD9-208ENST00000563410 CDCA8Q53HL2 280 aa29.28■■■□□ 2.28
CHD9-208ENST00000563410 NBPF6Q5VWK0 638 aa29.27■■■□□ 2.28
CHD9-208ENST00000563410 NBPF4Q96M43 638 aa29.27■■■□□ 2.28
CHD9-208ENST00000563410 TIMELESSQ9UNS1 1208 aa29.26■■■□□ 2.27
CHD9-208ENST00000563410 ZNF827Q17R98 1081 aa29.25■■■□□ 2.27
CHD9-208ENST00000563410 ZCRB1Q8TBF4 217 aaKnown RBP29.25■■■□□ 2.27
CHD9-208ENST00000563410 CARD14Q9BXL6 1004 aa29.25■■■□□ 2.27
CHD9-208ENST00000563410 LY75O60449 1722 aa29.25■■■□□ 2.27
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms