RNA–Protein interactions for RNA: ENST00000562722.1

SF3B3-202, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 881 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-202ENST00000562722 RREB1Q92766 1687 aa18.51■□□□□ 0.55
SF3B3-202ENST00000562722 KTN1Q86UP2 1357 aaKnown RBP18.51■□□□□ 0.55
SF3B3-202ENST00000562722 LRRC37A3O60309 1634 aa18.5■□□□□ 0.55
SF3B3-202ENST00000562722 NUP188Q5SRE5 1749 aa18.5■□□□□ 0.55
SF3B3-202ENST00000562722 ARHGEF25Q86VW2 580 aa18.5■□□□□ 0.55
SF3B3-202ENST00000562722 CDCA7Q9BWT1 371 aaPredicted RBP18.49■□□□□ 0.55
SF3B3-202ENST00000562722 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.48■□□□□ 0.55
SF3B3-202ENST00000562722 TMC1Q8TDI8 760 aa18.47■□□□□ 0.55
SF3B3-202ENST00000562722 CARD11Q9BXL7 1154 aa18.47■□□□□ 0.55
SF3B3-202ENST00000562722 PPP1R1BQ9UD71 204 aaPredicted RBP18.47■□□□□ 0.55
SF3B3-202ENST00000562722 COL18A1P39060 1754 aa18.47■□□□□ 0.55
SF3B3-202ENST00000562722 AKAP12Q02952 1782 aa18.47■□□□□ 0.55
SF3B3-202ENST00000562722 CARD10Q9BWT7 1032 aa18.46■□□□□ 0.55
SF3B3-202ENST00000562722 BCL11BQ9C0K0 894 aaPredicted RBP18.46■□□□□ 0.55
SF3B3-202ENST00000562722 PEAK1Q9H792 1746 aa18.46■□□□□ 0.55
SF3B3-202ENST00000562722 MARCH10Q8NA82 808 aaPredicted RBP18.45■□□□□ 0.54
SF3B3-202ENST00000562722 SPON1Q9HCB6 807 aa18.44■□□□□ 0.54
SF3B3-202ENST00000562722 NFAT5O94916 1531 aa18.44■□□□□ 0.54
SF3B3-202ENST00000562722 EXOC5O00471 708 aa18.43■□□□□ 0.54
SF3B3-202ENST00000562722 PLSCR1O15162 318 aa18.43■□□□□ 0.54
SF3B3-202ENST00000562722 PTF1AQ7RTS3 328 aa18.43■□□□□ 0.54
SF3B3-202ENST00000562722 HDGFL2Q7Z4V5 671 aaPredicted RBP18.43■□□□□ 0.54
SF3B3-202ENST00000562722 WNK3Q9BYP7 1800 aa18.43■□□□□ 0.54
SF3B3-202ENST00000562722 CCDC7Q96M83 1385 aa18.42■□□□□ 0.54
SF3B3-202ENST00000562722 TONSLQ96HA7 1378 aa18.42■□□□□ 0.54
SF3B3-202ENST00000562722 SBNO2Q9Y2G9 1366 aa18.42■□□□□ 0.54
SF3B3-202ENST00000562722 RGPD5Q99666 1765 aa18.41■□□□□ 0.54
SF3B3-202ENST00000562722 KCNQ2O43526 872 aa18.41■□□□□ 0.54
SF3B3-202ENST00000562722 NME9Q86XW9 330 aa18.41■□□□□ 0.54
SF3B3-202ENST00000562722 MON2Q7Z3U7 1717 aa18.4■□□□□ 0.54
SF3B3-202ENST00000562722 NLRP2Q9NX02 1062 aa18.4■□□□□ 0.54
SF3B3-202ENST00000562722 RGPD3A6NKT7 1758 aaPredicted RBP18.4■□□□□ 0.54
SF3B3-202ENST00000562722 RGPD4Q7Z3J3 1758 aa18.4■□□□□ 0.54
SF3B3-202ENST00000562722 SBF2Q86WG5 1849 aa18.39■□□□□ 0.54
SF3B3-202ENST00000562722 ANO8Q9HCE9 1232 aaPredicted RBP18.39■□□□□ 0.53
SF3B3-202ENST00000562722 USP31Q70CQ4 1352 aa18.39■□□□□ 0.53
SF3B3-202ENST00000562722 ABCC6O95255 1503 aa18.39■□□□□ 0.53
SF3B3-202ENST00000562722 SLC12A5Q9H2X9 1139 aa18.38■□□□□ 0.53
SF3B3-202ENST00000562722 TERF2IPQ9NYB0 399 aa18.38■□□□□ 0.53
SF3B3-202ENST00000562722 BCL9O00512 1426 aa18.38■□□□□ 0.53
SF3B3-202ENST00000562722 TNS2Q63HR2 1409 aa18.38■□□□□ 0.53
SF3B3-202ENST00000562722 DCAF8L1A6NGE4 600 aa18.37■□□□□ 0.53
SF3B3-202ENST00000562722 ERBB3P21860 1342 aa18.36■□□□□ 0.53
SF3B3-202ENST00000562722 CD163L1Q9NR16 1453 aa18.36■□□□□ 0.53
SF3B3-202ENST00000562722 STK32BQ9NY57 414 aa18.36■□□□□ 0.53
SF3B3-202ENST00000562722 EDC4Q6P2E9 1401 aaKnown RBP18.35■□□□□ 0.53
SF3B3-202ENST00000562722 TXNRD1Q16881 649 aa18.35■□□□□ 0.53
SF3B3-202ENST00000562722 ANKRD24Q8TF21 1146 aa18.35■□□□□ 0.53
SF3B3-202ENST00000562722 ACSBG1Q96GR2 724 aa18.35■□□□□ 0.53
SF3B3-202ENST00000562722 ZBTB7AO95365 584 aa18.34■□□□□ 0.53
SF3B3-202ENST00000562722 IL2RBP14784 551 aa18.34■□□□□ 0.53
SF3B3-202ENST00000562722 PROM2Q8N271 834 aa18.34■□□□□ 0.53
SF3B3-202ENST00000562722 A0A1W2PP64 1363 aa18.33■□□□□ 0.53
SF3B3-202ENST00000562722 NINLQ9Y2I6 1382 aa18.33■□□□□ 0.53
SF3B3-202ENST00000562722 YY1P25490 414 aa18.32■□□□□ 0.52
SF3B3-202ENST00000562722 PDGFDQ9GZP0 370 aaPredicted RBP18.32■□□□□ 0.52
SF3B3-202ENST00000562722 LTN1O94822 1766 aa18.32■□□□□ 0.52
SF3B3-202ENST00000562722 USP54Q70EL1 1684 aa18.31■□□□□ 0.52
SF3B3-202ENST00000562722 SLC15A2Q16348 729 aa18.3■□□□□ 0.52
SF3B3-202ENST00000562722 LTV1Q96GA3 475 aaPredicted RBP18.3■□□□□ 0.52
SF3B3-202ENST00000562722 ATF5Q9Y2D1 282 aaPredicted RBP18.3■□□□□ 0.52
SF3B3-202ENST00000562722 PUS7Q96PZ0 661 aaKnown RBP18.29■□□□□ 0.52
SF3B3-202ENST00000562722 CASZ1Q86V15 1759 aa18.29■□□□□ 0.52
SF3B3-202ENST00000562722 NHSQ6T4R5 1651 aa18.28■□□□□ 0.52
SF3B3-202ENST00000562722 ST20-MTHFSA0A0A6YYL1 179 aa18.28■□□□□ 0.52
SF3B3-202ENST00000562722 COG3Q96JB2 828 aa18.27■□□□□ 0.52
SF3B3-202ENST00000562722 DDX54Q8TDD1 881 aaKnown RBP18.26■□□□□ 0.51
SF3B3-202ENST00000562722 IP6K1Q92551 441 aa18.26■□□□□ 0.51
SF3B3-202ENST00000562722 SLC24A1O60721 1099 aa18.25■□□□□ 0.51
SF3B3-202ENST00000562722 AMPHP49418 695 aa18.25■□□□□ 0.51
SF3B3-202ENST00000562722 TESK2Q96S53 571 aa18.25■□□□□ 0.51
SF3B3-202ENST00000562722 PTGER2P43116 358 aa18.24■□□□□ 0.51
SF3B3-202ENST00000562722 MTFR1LQ9H019 292 aa18.24■□□□□ 0.51
SF3B3-202ENST00000562722 MYOM1P52179 1685 aa18.23■□□□□ 0.51
SF3B3-202ENST00000562722 MAP3K19Q56UN5 1328 aa18.23■□□□□ 0.51
SF3B3-202ENST00000562722 SYTL4Q96C24 671 aaPredicted RBP18.22■□□□□ 0.51
SF3B3-202ENST00000562722 BTAF1O14981 1849 aa18.21■□□□□ 0.51
SF3B3-202ENST00000562722 FBLN1P23142 703 aa18.2■□□□□ 0.5
SF3B3-202ENST00000562722 HOXC9P31274 260 aa18.2■□□□□ 0.5
SF3B3-202ENST00000562722 FHDC1Q9C0D6 1143 aaPredicted RBP18.2■□□□□ 0.5
SF3B3-202ENST00000562722 ANKRD36BQ8N2N9 1353 aa18.19■□□□□ 0.5
SF3B3-202ENST00000562722 FAM208AQ9UK61 1670 aaKnown RBP18.19■□□□□ 0.5
SF3B3-202ENST00000562722 TMF1P82094 1093 aa18.18■□□□□ 0.5
SF3B3-202ENST00000562722 ZNF827Q17R98 1081 aa18.18■□□□□ 0.5
SF3B3-202ENST00000562722 LRRC4BQ9NT99 713 aa18.18■□□□□ 0.5
SF3B3-202ENST00000562722 PAPPAQ13219 1627 aa18.17■□□□□ 0.5
SF3B3-202ENST00000562722 RRS1Q15050 365 aaKnown RBP18.17■□□□□ 0.5
SF3B3-202ENST00000562722 SLC27A3Q5K4L6 730 aa18.17■□□□□ 0.5
SF3B3-202ENST00000562722 SYT17Q9BSW7 474 aa18.17■□□□□ 0.5
SF3B3-202ENST00000562722 GGNBP2Q9H3C7 697 aa18.17■□□□□ 0.5
SF3B3-202ENST00000562722 KAT6BQ8WYB5 2073 aa18.17■□□□□ 0.5
SF3B3-202ENST00000562722 USP47Q96K76 1375 aa18.17■□□□□ 0.5
SF3B3-202ENST00000562722 PRIM1P49642 420 aaKnown RBP18.16■□□□□ 0.5
SF3B3-202ENST00000562722 ZCRB1Q8TBF4 217 aaKnown RBP18.16■□□□□ 0.5
SF3B3-202ENST00000562722 ARXQ96QS3 562 aa18.16■□□□□ 0.5
SF3B3-202ENST00000562722 RTL1A6NKG5 1358 aa18.16■□□□□ 0.5
SF3B3-202ENST00000562722 SMG6Q86US8 1419 aaKnown RBP18.15■□□□□ 0.5
SF3B3-202ENST00000562722 KLHL34Q8N239 644 aa18.14■□□□□ 0.49
SF3B3-202ENST00000562722 SGIP1Q9BQI5 828 aa18.14■□□□□ 0.49
SF3B3-202ENST00000562722 MEGF6O75095 1541 aa18.13■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 92.4 ms