RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 TMPOP42166 694 aaKnown RBP27.95■■■□□ 2.06
CLN3-209ENST00000561689 PHF23Q9BUL5 403 aaPredicted RBP27.94■■■□□ 2.06
CLN3-209ENST00000561689 SLFN5Q08AF3 891 aa27.93■■■□□ 2.06
CLN3-209ENST00000561689 GCP02774 474 aa27.93■■■□□ 2.06
CLN3-209ENST00000561689 PHACTR3Q96KR7 559 aa27.93■■■□□ 2.06
CLN3-209ENST00000561689 DUSP27Q5VZP5 1158 aa27.92■■■□□ 2.06
CLN3-209ENST00000561689 NFAT5O94916 1531 aa27.92■■■□□ 2.06
CLN3-209ENST00000561689 ZBTB7CA1YPR0 619 aa27.91■■■□□ 2.06
CLN3-209ENST00000561689 NEFMP07197 916 aa27.91■■■□□ 2.06
CLN3-209ENST00000561689 CCDC27Q2M243 656 aa27.91■■■□□ 2.06
CLN3-209ENST00000561689 SULT6B1Q6IMI4 303 aa27.91■■■□□ 2.06
CLN3-209ENST00000561689 AEBP1Q8IUX7 1158 aa27.91■■■□□ 2.06
CLN3-209ENST00000561689 KIF24Q5T7B8 1368 aa27.91■■■□□ 2.06
CLN3-209ENST00000561689 USP19O94966 1318 aa27.9■■■□□ 2.06
CLN3-209ENST00000561689 RIPK4P57078 832 aa27.89■■■□□ 2.06
CLN3-209ENST00000561689 NCBP3Q53F19 620 aaKnown RBP27.89■■■□□ 2.06
CLN3-209ENST00000561689 PXDNQ92626 1479 aa27.89■■■□□ 2.05
CLN3-209ENST00000561689 E9PSI1 815 aa27.88■■■□□ 2.05
CLN3-209ENST00000561689 IRX6P78412 446 aaPredicted RBP27.88■■■□□ 2.05
CLN3-209ENST00000561689 TRMT2AQ8IZ69 625 aaKnown RBP27.88■■■□□ 2.05
CLN3-209ENST00000561689 LTV1Q96GA3 475 aaPredicted RBP27.88■■■□□ 2.05
CLN3-209ENST00000561689 RCAN3Q9UKA8 241 aa27.87■■■□□ 2.05
CLN3-209ENST00000561689 TRIM35Q9UPQ4 493 aa27.87■■■□□ 2.05
CLN3-209ENST00000561689 SLIT3O75094 1523 aa27.87■■■□□ 2.05
CLN3-209ENST00000561689 WDR63Q8IWG1 891 aa27.86■■■□□ 2.05
CLN3-209ENST00000561689 IP6K1Q92551 441 aa27.86■■■□□ 2.05
CLN3-209ENST00000561689 RTL1A6NKG5 1358 aa27.86■■■□□ 2.05
CLN3-209ENST00000561689 TNS3Q68CZ2 1445 aa27.85■■■□□ 2.05
CLN3-209ENST00000561689 EYA1Q99502 592 aa27.85■■■□□ 2.05
CLN3-209ENST00000561689 SPATA31A3Q5VYP0 1347 aa27.85■■■□□ 2.05
CLN3-209ENST00000561689 ALS2Q96Q42 1657 aa27.85■■■□□ 2.05
CLN3-209ENST00000561689 ARHGEF25Q86VW2 580 aa27.84■■■□□ 2.05
CLN3-209ENST00000561689 NFE2L2Q16236 605 aa27.83■■■□□ 2.05
CLN3-209ENST00000561689 ARHGEF10O15013 1369 aa27.83■■■□□ 2.05
CLN3-209ENST00000561689 CABLES1Q8TDN4 633 aa27.82■■■□□ 2.04
CLN3-209ENST00000561689 RGPD1P0DJD0 1748 aa27.81■■■□□ 2.04
CLN3-209ENST00000561689 MED1Q15648 1581 aaPredicted RBP27.81■■■□□ 2.04
CLN3-209ENST00000561689 IGSF1Q8N6C5 1336 aa27.81■■■□□ 2.04
CLN3-209ENST00000561689 ZC3H6P61129 1189 aaKnown RBP27.8■■■□□ 2.04
CLN3-209ENST00000561689 LTN1O94822 1766 aa27.8■■■□□ 2.04
CLN3-209ENST00000561689 LTBP4Q8N2S1 1624 aa27.8■■■□□ 2.04
CLN3-209ENST00000561689 SOS2Q07890 1332 aaPredicted RBP27.8■■■□□ 2.04
CLN3-209ENST00000561689 RNF123Q5XPI4 1314 aa27.79■■■□□ 2.04
CLN3-209ENST00000561689 KDRP35968 1356 aa27.75■■■□□ 2.03
CLN3-209ENST00000561689 AXIN2Q9Y2T1 843 aa27.75■■■□□ 2.03
CLN3-209ENST00000561689 USHBP1Q8N6Y0 703 aa27.73■■■□□ 2.03
CLN3-209ENST00000561689 MYH16Q9H6N6 1097 aa27.73■■■□□ 2.03
CLN3-209ENST00000561689 NBPF6Q5VWK0 638 aa27.72■■■□□ 2.03
CLN3-209ENST00000561689 NBPF4Q96M43 638 aa27.72■■■□□ 2.03
CLN3-209ENST00000561689 THUMPD2Q9BTF0 503 aaKnown RBP27.72■■■□□ 2.03
CLN3-209ENST00000561689 PHRF1Q9P1Y6 1649 aaKnown RBP27.72■■■□□ 2.03
CLN3-209ENST00000561689 RRP1P56182 461 aaKnown RBP27.71■■■□□ 2.03
CLN3-209ENST00000561689 LRRC59Q96AG4 307 aaKnown RBP27.71■■■□□ 2.03
CLN3-209ENST00000561689 TSR2Q969E8 191 aaKnown RBP27.7■■■□□ 2.03
CLN3-209ENST00000561689 FAM83GA6ND36 823 aa27.69■■■□□ 2.02
CLN3-209ENST00000561689 ANKRD24Q8TF21 1146 aa27.69■■■□□ 2.02
CLN3-209ENST00000561689 IL16Q14005 1332 aa27.69■■■□□ 2.02
CLN3-209ENST00000561689 LMOD3Q0VAK6 560 aa27.68■■■□□ 2.02
CLN3-209ENST00000561689 MTHFSDQ2M296 383 aaKnown RBP27.68■■■□□ 2.02
CLN3-209ENST00000561689 FANCIQ9NVI1 1328 aa27.67■■■□□ 2.02
CLN3-209ENST00000561689 DCTN1Q14203 1278 aa27.66■■■□□ 2.02
CLN3-209ENST00000561689 CHRNA2Q15822 529 aa27.66■■■□□ 2.02
CLN3-209ENST00000561689 KIAA0232Q92628 1395 aa27.65■■■□□ 2.02
CLN3-209ENST00000561689 PLIN1O60240 522 aa27.65■■■□□ 2.02
CLN3-209ENST00000561689 AEBP2Q6ZN18 517 aaPredicted RBP27.65■■■□□ 2.02
CLN3-209ENST00000561689 LAS1LQ9Y4W2 734 aaKnown RBP27.65■■■□□ 2.02
CLN3-209ENST00000561689 NHSL1Q5SYE7 1610 aa27.64■■■□□ 2.02
CLN3-209ENST00000561689 CALD1Q05682 793 aaKnown RBP27.62■■■□□ 2.01
CLN3-209ENST00000561689 ERBB3P21860 1342 aa27.62■■■□□ 2.01
CLN3-209ENST00000561689 HAP1P54257 671 aaPredicted RBP27.62■■■□□ 2.01
CLN3-209ENST00000561689 MCM10Q7L590 875 aa27.61■■■□□ 2.01
CLN3-209ENST00000561689 GAS2L2Q8NHY3 880 aa27.61■■■□□ 2.01
CLN3-209ENST00000561689 CPDO75976 1380 aa27.61■■■□□ 2.01
CLN3-209ENST00000561689 CRYBG1Q9Y4K1 1723 aa27.6■■■□□ 2.01
CLN3-209ENST00000561689 ROBO1Q9Y6N7 1651 aa27.6■■■□□ 2.01
CLN3-209ENST00000561689 BCAR3O75815 825 aa27.6■■■□□ 2.01
CLN3-209ENST00000561689 EXOSC9Q06265 439 aaKnown RBP27.6■■■□□ 2.01
CLN3-209ENST00000561689 ERICH6BQ5W0A0 696 aa27.59■■■□□ 2.01
CLN3-209ENST00000561689 DLG5Q8TDM6 1919 aa27.59■■■□□ 2.01
CLN3-209ENST00000561689 PRDM11Q9NQV5 511 aa27.57■■■□□ 2
CLN3-209ENST00000561689 IFT57Q9NWB7 429 aa27.57■■■□□ 2
CLN3-209ENST00000561689 GNAI1P63096 354 aa27.57■■■□□ 2
CLN3-209ENST00000561689 ZNF853P0CG23 659 aa27.55■■■□□ 2
CLN3-209ENST00000561689 RTF1Q92541 710 aaKnown RBP27.55■■■□□ 2
CLN3-209ENST00000561689 NLRP2Q9NX02 1062 aa27.55■■■□□ 2
CLN3-209ENST00000561689 RGPD2P0DJD1 1756 aa27.55■■■□□ 2
CLN3-209ENST00000561689 CSB-PGBD3P0DP91 1061 aa27.55■■■□□ 2
CLN3-209ENST00000561689 CFAP44Q96MT7 982 aa27.55■■■□□ 2
CLN3-209ENST00000561689 RGPD5Q99666 1765 aa27.54■■■□□ 2
CLN3-209ENST00000561689 COL18A1P39060 1754 aa27.54■■■□□ 2
CLN3-209ENST00000561689 RARSP54136 660 aaKnown RBP27.54■■■□□ 2
CLN3-209ENST00000561689 PIP4K2BP78356 416 aa27.54■■■□□ 2
CLN3-209ENST00000561689 MBIPQ9NS73 344 aa27.54■■■□□ 2
CLN3-209ENST00000561689 TOM1O60784 492 aa27.53■■■□□ 2
CLN3-209ENST00000561689 NCAPD2Q15021 1401 aa27.53■■■□□ 2
CLN3-209ENST00000561689 GNAT3A8MTJ3 354 aa27.51■■■□□ 2
CLN3-209ENST00000561689 AHDC1Q5TGY3 1603 aaPredicted RBP27.51■■□□□ 1.99
CLN3-209ENST00000561689 C20orf194Q5TEA3 1177 aa27.51■■□□□ 1.99
CLN3-209ENST00000561689 GOLGA6L2Q8N9W4 650 aaPredicted RBP27.51■■□□□ 1.99
CLN3-209ENST00000561689 BCL2L13Q9BXK5 485 aa27.51■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms