RNA–Protein interactions for RNA: ENST00000561395.5

TPM1-231, Transcript of tropomyosin 1, human

TSL 5

Gene TPM1, Length 673 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-231	ENST00000561395	NBPF14	Q5TI25	921 aa		10.26	□□□□□ -0.77
TPM1-231	ENST00000561395	FAM196A	Q6ZSG2	479 aa		10.26	□□□□□ -0.77
TPM1-231	ENST00000561395	PUS7	Q96PZ0	661 aa	Known RBP	10.26	□□□□□ -0.77
TPM1-231	ENST00000561395	PANK3	Q9H999	370 aa		10.26	□□□□□ -0.77
TPM1-231	ENST00000561395	UTRN	P46939	3433 aa		10.26	□□□□□ -0.77
TPM1-231	ENST00000561395	EVC2	Q86UK5	1308 aa		10.26	□□□□□ -0.77
TPM1-231	ENST00000561395	ITSN1	Q15811	1721 aa		10.25	□□□□□ -0.77
TPM1-231	ENST00000561395	PRAM1	Q96QH2	718 aa		10.25	□□□□□ -0.77
TPM1-231	ENST00000561395	WNK3	Q9BYP7	1800 aa		10.25	□□□□□ -0.77
TPM1-231	ENST00000561395	PEAK1	Q9H792	1746 aa		10.24	□□□□□ -0.77
TPM1-231	ENST00000561395	AKAP12	Q02952	1782 aa		10.24	□□□□□ -0.77
TPM1-231	ENST00000561395	CENPB	P07199	599 aa	Predicted RBP	10.24	□□□□□ -0.77
TPM1-231	ENST00000561395	C1QTNF8	P60827	252 aa		10.24	□□□□□ -0.77
TPM1-231	ENST00000561395	POGK	Q9P215	609 aa		10.24	□□□□□ -0.77
TPM1-231	ENST00000561395	SAFB2	Q14151	953 aa	Known RBP eCLIP	10.23	□□□□□ -0.77
TPM1-231	ENST00000561395	RALBP1	Q15311	655 aa		10.23	□□□□□ -0.77
TPM1-231	ENST00000561395	SIRT1	Q96EB6	747 aa		10.23	□□□□□ -0.77
TPM1-231	ENST00000561395	SPATA31A1	Q5TZJ5	1347 aa		10.23	□□□□□ -0.77
TPM1-231	ENST00000561395	MINK1	Q8N4C8	1332 aa	Predicted RBP	10.23	□□□□□ -0.77
TPM1-231	ENST00000561395	ANKAR	Q7Z5J8	1434 aa		10.23	□□□□□ -0.77
TPM1-231	ENST00000561395	CEP350	Q5VT06	3117 aa		10.22	□□□□□ -0.77
TPM1-231	ENST00000561395	MYBBP1A	Q9BQG0	1328 aa	Known RBP	10.22	□□□□□ -0.77
TPM1-231	ENST00000561395	NPC1L1	Q9UHC9	1359 aa		10.22	□□□□□ -0.77
TPM1-231	ENST00000561395	KNSTRN	Q9Y448	316 aa		10.21	□□□□□ -0.77
TPM1-231	ENST00000561395	LRRC37A3	O60309	1634 aa		10.21	□□□□□ -0.78
TPM1-231	ENST00000561395	LMO7	Q8WWI1	1683 aa		10.21	□□□□□ -0.78
TPM1-231	ENST00000561395	BRD4	O60885	1362 aa	Predicted RBP	10.2	□□□□□ -0.78
TPM1-231	ENST00000561395	CNGB1	Q14028	1251 aa	Predicted RBP	10.2	□□□□□ -0.78
TPM1-231	ENST00000561395	CCDC184	Q52MB2	194 aa		10.2	□□□□□ -0.78
TPM1-231	ENST00000561395	ANKRD36B	Q8N2N9	1353 aa		10.2	□□□□□ -0.78
TPM1-231	ENST00000561395	PMFBP1	Q8TBY8	1022 aa		10.2	□□□□□ -0.78
TPM1-231	ENST00000561395	NSD3	Q9BZ95	1437 aa		10.2	□□□□□ -0.78
TPM1-231	ENST00000561395	MRS2	Q9HD23	443 aa		10.2	□□□□□ -0.78
TPM1-231	ENST00000561395	SPINK5	Q9NQ38	1064 aa	Predicted RBP	10.2	□□□□□ -0.78
TPM1-231	ENST00000561395	PRDM11	Q9NQV5	511 aa		10.2	□□□□□ -0.78
TPM1-231	ENST00000561395	TOPAZ1	Q8N9V7	1692 aa		10.19	□□□□□ -0.78
TPM1-231	ENST00000561395	CABP2	Q9NPB3	220 aa		10.19	□□□□□ -0.78
TPM1-231	ENST00000561395	CD163L1	Q9NR16	1453 aa		10.18	□□□□□ -0.78
TPM1-231	ENST00000561395	KIAA0232	Q92628	1395 aa		10.18	□□□□□ -0.78
TPM1-231	ENST00000561395	SRPK2	P78362	688 aa	Known RBP	10.18	□□□□□ -0.78
TPM1-231	ENST00000561395	PDE3B	Q13370	1112 aa		10.18	□□□□□ -0.78
TPM1-231	ENST00000561395	CC2D1B	Q5T0F9	858 aa	Known RBP	10.18	□□□□□ -0.78
TPM1-231	ENST00000561395	TMC1	Q8TDI8	760 aa		10.18	□□□□□ -0.78
TPM1-231	ENST00000561395	CARD14	Q9BXL6	1004 aa		10.18	□□□□□ -0.78
TPM1-231	ENST00000561395	SLC12A5	Q9H2X9	1139 aa		10.18	□□□□□ -0.78
TPM1-231	ENST00000561395	STRN4	Q9NRL3	753 aa		10.18	□□□□□ -0.78
TPM1-231	ENST00000561395	SHANK3	Q9BYB0	1731 aa		10.18	□□□□□ -0.78
TPM1-231	ENST00000561395	ANKRD26	Q9UPS8	1709 aa		10.18	□□□□□ -0.78
TPM1-231	ENST00000561395	ATP7B	P35670	1465 aa		10.17	□□□□□ -0.78
TPM1-231	ENST00000561395	SSH2	Q76I76	1423 aa		10.17	□□□□□ -0.78
TPM1-231	ENST00000561395	KIF20B	Q96Q89	1820 aa		10.17	□□□□□ -0.78
TPM1-231	ENST00000561395	NLRP13	Q86W25	1043 aa		10.17	□□□□□ -0.78
TPM1-231	ENST00000561395	CDK19	Q9BWU1	502 aa		10.17	□□□□□ -0.78
TPM1-231	ENST00000561395	ANO8	Q9HCE9	1232 aa	Predicted RBP	10.17	□□□□□ -0.78
TPM1-231	ENST00000561395	USP35	Q9P2H5	1018 aa		10.17	□□□□□ -0.78
TPM1-231	ENST00000561395		A0A1W2PP64	1363 aa		10.16	□□□□□ -0.78
TPM1-231	ENST00000561395	WASL	O00401	505 aa	Predicted RBP	10.16	□□□□□ -0.78
TPM1-231	ENST00000561395	C1QBP	Q07021	282 aa	Known RBP	10.16	□□□□□ -0.78
TPM1-231	ENST00000561395	CHRNA2	Q15822	529 aa		10.16	□□□□□ -0.78
TPM1-231	ENST00000561395	BARGIN	Q6ZT62	677 aa		10.16	□□□□□ -0.78
TPM1-231	ENST00000561395	MON2	Q7Z3U7	1717 aa		10.16	□□□□□ -0.78
TPM1-231	ENST00000561395	OVOS2	A0A0G2JMS6	1433 aa		10.16	□□□□□ -0.78
TPM1-231	ENST00000561395	OVOS2	A0A0J9YW53	1432 aa		10.16	□□□□□ -0.78
TPM1-231	ENST00000561395	OVOS2	Q6IE36	1432 aa		10.16	□□□□□ -0.78
TPM1-231	ENST00000561395	ZBTB7A	O95365	584 aa		10.15	□□□□□ -0.78
TPM1-231	ENST00000561395	PTGER2	P43116	358 aa		10.15	□□□□□ -0.78
TPM1-231	ENST00000561395	PDGFD	Q9GZP0	370 aa	Predicted RBP	10.15	□□□□□ -0.78
TPM1-231	ENST00000561395	NSD2	O96028	1365 aa		10.14	□□□□□ -0.79
TPM1-231	ENST00000561395	GIGYF1	O75420	1035 aa	Predicted RBP	10.14	□□□□□ -0.79
TPM1-231	ENST00000561395	CAPN15	O75808	1086 aa		10.14	□□□□□ -0.79
TPM1-231	ENST00000561395	FHDC1	Q9C0D6	1143 aa	Predicted RBP	10.14	□□□□□ -0.79
TPM1-231	ENST00000561395	CGNL1	Q0VF96	1302 aa		10.13	□□□□□ -0.79
TPM1-231	ENST00000561395	PAK3	O75914	559 aa	Predicted RBP	10.13	□□□□□ -0.79
TPM1-231	ENST00000561395	FAM9B	Q8IZU0	186 aa		10.13	□□□□□ -0.79
TPM1-231	ENST00000561395	SYT17	Q9BSW7	474 aa		10.13	□□□□□ -0.79
TPM1-231	ENST00000561395	TERF2IP	Q9NYB0	399 aa		10.13	□□□□□ -0.79
TPM1-231	ENST00000561395	PPIP5K1	Q6PFW1	1433 aa		10.13	□□□□□ -0.79
TPM1-231	ENST00000561395	RGPD5	Q99666	1765 aa		10.13	□□□□□ -0.79
TPM1-231	ENST00000561395	QSER1	Q2KHR3	1735 aa		10.13	□□□□□ -0.79
TPM1-231	ENST00000561395	PRR36	Q9H6K5	1346 aa		10.12	□□□□□ -0.79
TPM1-231	ENST00000561395	PPP2R1A	P30153	589 aa		10.12	□□□□□ -0.79
TPM1-231	ENST00000561395	PNISR	Q8TF01	805 aa	Known RBP	10.12	□□□□□ -0.79
TPM1-231	ENST00000561395	CPSF1	Q10570	1443 aa	Known RBP	10.12	□□□□□ -0.79
TPM1-231	ENST00000561395	COL24A1	Q17RW2	1714 aa		10.12	□□□□□ -0.79
TPM1-231	ENST00000561395	TUBGCP6	Q96RT7	1819 aa		10.12	□□□□□ -0.79
TPM1-231	ENST00000561395	KAT6B	Q8WYB5	2073 aa		10.11	□□□□□ -0.79
TPM1-231	ENST00000561395	PAPPA	Q13219	1627 aa		10.11	□□□□□ -0.79
TPM1-231	ENST00000561395	PLSCR1	O15162	318 aa		10.11	□□□□□ -0.79
TPM1-231	ENST00000561395	EVA1C	P58658	441 aa		10.11	□□□□□ -0.79
TPM1-231	ENST00000561395	ZC3H6	P61129	1189 aa	Known RBP	10.11	□□□□□ -0.79
TPM1-231	ENST00000561395	LARP1	Q6PKG0	1096 aa	Known RBP	10.11	□□□□□ -0.79
TPM1-231	ENST00000561395	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	10.11	□□□□□ -0.79
TPM1-231	ENST00000561395	TCP11L2	Q8N4U5	519 aa		10.11	□□□□□ -0.79
TPM1-231	ENST00000561395	CABP1	Q9NZU7	370 aa		10.11	□□□□□ -0.79
TPM1-231	ENST00000561395	ZNF219	Q9P2Y4	722 aa	Predicted RBP	10.11	□□□□□ -0.79
TPM1-231	ENST00000561395	COL5A2	P05997	1499 aa	Predicted RBP	10.1	□□□□□ -0.79
TPM1-231	ENST00000561395	EDC4	Q6P2E9	1401 aa	Known RBP	10.1	□□□□□ -0.79
TPM1-231	ENST00000561395	NHS	Q6T4R5	1651 aa		10.1	□□□□□ -0.79
TPM1-231	ENST00000561395	HNRNPU	Q00839	825 aa	Known RBP eCLIP	10.1	□□□□□ -0.79
TPM1-231	ENST00000561395	NUDT16	Q96DE0	195 aa	Known RBP	10.1	□□□□□ -0.79

Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms