RNA–Protein interactions for RNA: ENST00000561065.1

LMX1B-204, Transcript of LIM homeobox transcription factor 1 beta, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LMX1B, Length 1,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1B-204ENST00000561065 TMC1Q8TDI8 760 aa22.57■■□□□ 1.2
LMX1B-204ENST00000561065 USP47Q96K76 1375 aa22.57■■□□□ 1.2
LMX1B-204ENST00000561065 NME9Q86XW9 330 aa22.57■■□□□ 1.2
LMX1B-204ENST00000561065 OVOS2A0A0J9YW53 1432 aa22.56■■□□□ 1.2
LMX1B-204ENST00000561065 DISP2A7MBM2 1401 aa22.56■■□□□ 1.2
LMX1B-204ENST00000561065 OVOS2Q6IE36 1432 aa22.56■■□□□ 1.2
LMX1B-204ENST00000561065 SF3B2Q13435 895 aaKnown RBP22.56■■□□□ 1.2
LMX1B-204ENST00000561065 PUS7Q96PZ0 661 aaKnown RBP22.55■■□□□ 1.2
LMX1B-204ENST00000561065 PCGF6Q9BYE7 350 aa22.55■■□□□ 1.2
LMX1B-204ENST00000561065 KCNH5Q8NCM2 988 aa22.54■■□□□ 1.2
LMX1B-204ENST00000561065 THRAP3Q9Y2W1 955 aaKnown RBP22.54■■□□□ 1.2
LMX1B-204ENST00000561065 MYOM1P52179 1685 aa22.53■■□□□ 1.2
LMX1B-204ENST00000561065 WDR17Q8IZU2 1322 aa22.53■■□□□ 1.2
LMX1B-204ENST00000561065 NINLQ9Y2I6 1382 aa22.52■■□□□ 1.2
LMX1B-204ENST00000561065 HDGFL2Q7Z4V5 671 aaPredicted RBP22.52■■□□□ 1.2
LMX1B-204ENST00000561065 RREB1Q92766 1687 aa22.52■■□□□ 1.2
LMX1B-204ENST00000561065 SBF2Q86WG5 1849 aa22.51■■□□□ 1.19
LMX1B-204ENST00000561065 BAG6P46379 1132 aa22.5■■□□□ 1.19
LMX1B-204ENST00000561065 CLSPNQ9HAW4 1339 aa22.49■■□□□ 1.19
LMX1B-204ENST00000561065 EN1Q05925 392 aaPredicted RBP22.49■■□□□ 1.19
LMX1B-204ENST00000561065 TOM1L2Q6ZVM7 507 aa22.49■■□□□ 1.19
LMX1B-204ENST00000561065 TERF2IPQ9NYB0 399 aa22.49■■□□□ 1.19
LMX1B-204ENST00000561065 TRIM37O94972 964 aa22.48■■□□□ 1.19
LMX1B-204ENST00000561065 FAM196AQ6ZSG2 479 aa22.48■■□□□ 1.19
LMX1B-204ENST00000561065 NUP188Q5SRE5 1749 aa22.48■■□□□ 1.19
LMX1B-204ENST00000561065 PDE3BQ13370 1112 aa22.47■■□□□ 1.19
LMX1B-204ENST00000561065 TIMELESSQ9UNS1 1208 aa22.46■■□□□ 1.19
LMX1B-204ENST00000561065 ANKRD36BQ8N2N9 1353 aa22.46■■□□□ 1.19
LMX1B-204ENST00000561065 KIF20BQ96Q89 1820 aa22.45■■□□□ 1.18
LMX1B-204ENST00000561065 OVOS2A0A0G2JMS6 1433 aa22.45■■□□□ 1.18
LMX1B-204ENST00000561065 ERBB3P21860 1342 aa22.43■■□□□ 1.18
LMX1B-204ENST00000561065 LRP5O75197 1615 aa22.42■■□□□ 1.18
LMX1B-204ENST00000561065 EZH2Q15910 746 aaKnown RBP22.42■■□□□ 1.18
LMX1B-204ENST00000561065 CARD10Q9BWT7 1032 aa22.42■■□□□ 1.18
LMX1B-204ENST00000561065 RGPD3A6NKT7 1758 aaPredicted RBP22.42■■□□□ 1.18
LMX1B-204ENST00000561065 RGPD4Q7Z3J3 1758 aa22.42■■□□□ 1.18
LMX1B-204ENST00000561065 FAM208AQ9UK61 1670 aaKnown RBP22.41■■□□□ 1.18
LMX1B-204ENST00000561065 CSB-PGBD3P0DP91 1061 aa22.41■■□□□ 1.18
LMX1B-204ENST00000561065 TMF1P82094 1093 aa22.41■■□□□ 1.18
LMX1B-204ENST00000561065 TNS2Q63HR2 1409 aa22.4■■□□□ 1.18
LMX1B-204ENST00000561065 SLC24A1O60721 1099 aa22.4■■□□□ 1.18
LMX1B-204ENST00000561065 CAMKK2Q96RR4 588 aa22.4■■□□□ 1.18
LMX1B-204ENST00000561065 CCDC7Q96M83 1385 aa22.4■■□□□ 1.18
LMX1B-204ENST00000561065 DDB1Q16531 1140 aa22.39■■□□□ 1.18
LMX1B-204ENST00000561065 RGPD2P0DJD1 1756 aa22.39■■□□□ 1.17
LMX1B-204ENST00000561065 PSDA5PKW4 1024 aaPredicted RBP22.38■■□□□ 1.17
LMX1B-204ENST00000561065 APBA3O96018 575 aa22.37■■□□□ 1.17
LMX1B-204ENST00000561065 PARD3Q8TEW0 1356 aa22.37■■□□□ 1.17
LMX1B-204ENST00000561065 MARCH10Q8NA82 808 aaPredicted RBP22.36■■□□□ 1.17
LMX1B-204ENST00000561065 BCL9O00512 1426 aa22.36■■□□□ 1.17
LMX1B-204ENST00000561065 FBLN1P23142 703 aa22.35■■□□□ 1.17
LMX1B-204ENST00000561065 CCER1Q8TC90 406 aaPredicted RBP22.35■■□□□ 1.17
LMX1B-204ENST00000561065 CDCA7Q9BWT1 371 aaPredicted RBP22.35■■□□□ 1.17
LMX1B-204ENST00000561065 PTF1AQ7RTS3 328 aa22.34■■□□□ 1.17
LMX1B-204ENST00000561065 ANKRD24Q8TF21 1146 aa22.34■■□□□ 1.17
LMX1B-204ENST00000561065 MAP3K19Q56UN5 1328 aa22.34■■□□□ 1.17
LMX1B-204ENST00000561065 NHSQ6T4R5 1651 aa22.34■■□□□ 1.17
LMX1B-204ENST00000561065 COG3Q96JB2 828 aa22.33■■□□□ 1.17
LMX1B-204ENST00000561065 SHANK3Q9BYB0 1731 aa22.32■■□□□ 1.16
LMX1B-204ENST00000561065 FYB1O15117 783 aa22.31■■□□□ 1.16
LMX1B-204ENST00000561065 IP6K1Q92551 441 aa22.31■■□□□ 1.16
LMX1B-204ENST00000561065 NLRP2Q9NX02 1062 aa22.31■■□□□ 1.16
LMX1B-204ENST00000561065 R3HDM1Q15032 1099 aaKnown RBP22.31■■□□□ 1.16
LMX1B-204ENST00000561065 GGNBP2Q9H3C7 697 aa22.31■■□□□ 1.16
LMX1B-204ENST00000561065 NSD3Q9BZ95 1437 aa22.3■■□□□ 1.16
LMX1B-204ENST00000561065 C11orf95C9JLR9 678 aaPredicted RBP22.3■■□□□ 1.16
LMX1B-204ENST00000561065 HOXC9P31274 260 aa22.29■■□□□ 1.16
LMX1B-204ENST00000561065 CDCA8Q53HL2 280 aa22.29■■□□□ 1.16
LMX1B-204ENST00000561065 CARD14Q9BXL6 1004 aa22.29■■□□□ 1.16
LMX1B-204ENST00000561065 ANKRD26Q9UPS8 1709 aa22.28■■□□□ 1.16
LMX1B-204ENST00000561065 RTL1A6NKG5 1358 aa22.28■■□□□ 1.16
LMX1B-204ENST00000561065 RRS1Q15050 365 aaKnown RBP22.27■■□□□ 1.16
LMX1B-204ENST00000561065 BTAF1O14981 1849 aa22.26■■□□□ 1.15
LMX1B-204ENST00000561065 EXOC5O00471 708 aa22.26■■□□□ 1.15
LMX1B-204ENST00000561065 IL2RBP14784 551 aa22.26■■□□□ 1.15
LMX1B-204ENST00000561065 LTV1Q96GA3 475 aaPredicted RBP22.26■■□□□ 1.15
LMX1B-204ENST00000561065 BCL11BQ9C0K0 894 aaPredicted RBP22.25■■□□□ 1.15
LMX1B-204ENST00000561065 MEGF6O75095 1541 aa22.24■■□□□ 1.15
LMX1B-204ENST00000561065 DOT1LQ8TEK3 1739 aa22.23■■□□□ 1.15
LMX1B-204ENST00000561065 CASZ1Q86V15 1759 aa22.22■■□□□ 1.15
LMX1B-204ENST00000561065 AMPHP49418 695 aa22.22■■□□□ 1.15
LMX1B-204ENST00000561065 PLSCR1O15162 318 aa22.21■■□□□ 1.15
LMX1B-204ENST00000561065 HSPA5P11021 654 aaKnown RBP22.21■■□□□ 1.15
LMX1B-204ENST00000561065 KCNQ2O43526 872 aa22.2■■□□□ 1.14
LMX1B-204ENST00000561065 ANO8Q9HCE9 1232 aaPredicted RBP22.2■■□□□ 1.14
LMX1B-204ENST00000561065 PROM2Q8N271 834 aa22.19■■□□□ 1.14
LMX1B-204ENST00000561065 PAPPAQ13219 1627 aa22.19■■□□□ 1.14
LMX1B-204ENST00000561065 MAP2P11137 1827 aaKnown RBP22.18■■□□□ 1.14
LMX1B-204ENST00000561065 ACSBG1Q96GR2 724 aa22.18■■□□□ 1.14
LMX1B-204ENST00000561065 FLT4P35916 1363 aa22.17■■□□□ 1.14
LMX1B-204ENST00000561065 EIF4G2P78344 907 aaKnown RBP eCLIP22.17■■□□□ 1.14
LMX1B-204ENST00000561065 INSRP06213 1382 aa22.16■■□□□ 1.14
LMX1B-204ENST00000561065 KAT6BQ8WYB5 2073 aa22.16■■□□□ 1.14
LMX1B-204ENST00000561065 HSP90AB2PQ58FF8 381 aa22.15■■□□□ 1.14
LMX1B-204ENST00000561065 NBPF6Q5VWK0 638 aa22.15■■□□□ 1.14
LMX1B-204ENST00000561065 USHBP1Q8N6Y0 703 aa22.15■■□□□ 1.14
LMX1B-204ENST00000561065 NBPF4Q96M43 638 aa22.15■■□□□ 1.14
LMX1B-204ENST00000561065 POLR3GLQ9BT43 218 aa22.15■■□□□ 1.14
LMX1B-204ENST00000561065 EMILIN1Q9Y6C2 1016 aa22.15■■□□□ 1.14
LMX1B-204ENST00000561065 KIF24Q5T7B8 1368 aa22.15■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms