RNA–Protein interactions for RNA: ENST00000560734.5

SHF-208, Transcript of Src homology 2 domain containing F, human

TSL 3 BASIC

Gene SHF, Length 1,731 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHF-208	ENST00000560734	FLT4	P35916	1363 aa		32.4	■■■□□ 2.78
SHF-208	ENST00000560734	PHACTR3	Q96KR7	559 aa		32.4	■■■□□ 2.78
SHF-208	ENST00000560734	ZNF428	Q96B54	188 aa		32.39	■■■□□ 2.78
SHF-208	ENST00000560734	HSPA2	P54652	639 aa		32.38	■■■□□ 2.77
SHF-208	ENST00000560734	ARHGEF10	O15013	1369 aa		32.37	■■■□□ 2.77
SHF-208	ENST00000560734	MAP3K19	Q56UN5	1328 aa		32.36	■■■□□ 2.77
SHF-208	ENST00000560734	MARF1	Q9Y4F3	1742 aa	Known RBP	32.35	■■■□□ 2.77
SHF-208	ENST00000560734	MS4A1	P11836	297 aa		32.35	■■■□□ 2.77
SHF-208	ENST00000560734	CANX	P27824	592 aa	Known RBP	32.35	■■■□□ 2.77
SHF-208	ENST00000560734	CENPQ	Q7L2Z9	268 aa	Predicted RBP	32.34	■■■□□ 2.77
SHF-208	ENST00000560734	KDM2B	Q8NHM5	1336 aa		32.34	■■■□□ 2.77
SHF-208	ENST00000560734	EXOSC9	Q06265	439 aa	Known RBP	32.34	■■■□□ 2.77
SHF-208	ENST00000560734	IFT57	Q9NWB7	429 aa		32.34	■■■□□ 2.77
SHF-208	ENST00000560734	NLRP6	P59044	892 aa		32.33	■■■□□ 2.77
SHF-208	ENST00000560734	TSR2	Q969E8	191 aa	Known RBP	32.33	■■■□□ 2.77
SHF-208	ENST00000560734	TCERG1	O14776	1098 aa	Known RBP	32.32	■■■□□ 2.76
SHF-208	ENST00000560734	HSP90AB2P	Q58FF8	381 aa		32.32	■■■□□ 2.76
SHF-208	ENST00000560734	GNAI1	P63096	354 aa		32.31	■■■□□ 2.76
SHF-208	ENST00000560734	ZNF853	P0CG23	659 aa		32.3	■■■□□ 2.76
SHF-208	ENST00000560734	ALDH1L2	Q3SY69	923 aa		32.29	■■■□□ 2.76
SHF-208	ENST00000560734	KDR	P35968	1356 aa		32.29	■■■□□ 2.76
SHF-208	ENST00000560734	NCOA3	Q9Y6Q9	1424 aa		32.29	■■■□□ 2.76
SHF-208	ENST00000560734	SULT6B1	Q6IMI4	303 aa		32.29	■■■□□ 2.76
SHF-208	ENST00000560734	RTL1	A6NKG5	1358 aa		32.28	■■■□□ 2.76
SHF-208	ENST00000560734	ABTB2	Q8N961	1025 aa		32.28	■■■□□ 2.76
SHF-208	ENST00000560734	DLG5	Q8TDM6	1919 aa		32.27	■■■□□ 2.76
SHF-208	ENST00000560734	BRPF1	P55201	1214 aa	Predicted RBP	32.27	■■■□□ 2.76
SHF-208	ENST00000560734	AMPH	P49418	695 aa		32.26	■■■□□ 2.75
SHF-208	ENST00000560734	ZKSCAN2	Q63HK3	967 aa		32.26	■■■□□ 2.75
SHF-208	ENST00000560734	FRAT1	Q92837	279 aa	Predicted RBP	32.25	■■■□□ 2.75
SHF-208	ENST00000560734	CFAP44	Q96MT7	982 aa		32.24	■■■□□ 2.75
SHF-208	ENST00000560734	IGSF1	Q8N6C5	1336 aa		32.23	■■■□□ 2.75
SHF-208	ENST00000560734	ESCO1	Q5FWF5	840 aa		32.22	■■■□□ 2.75
SHF-208	ENST00000560734	C14orf37	Q86TY3	774 aa		32.22	■■■□□ 2.75
SHF-208	ENST00000560734	PROSER2	Q86WR7	435 aa	Predicted RBP	32.22	■■■□□ 2.75
SHF-208	ENST00000560734	CLUAP1	Q96AJ1	413 aa		32.22	■■■□□ 2.75
SHF-208	ENST00000560734	KIF16B	Q96L93	1317 aa		32.21	■■■□□ 2.75
SHF-208	ENST00000560734	AEBP1	Q8IUX7	1158 aa		32.21	■■■□□ 2.75
SHF-208	ENST00000560734	PANK1	Q8TE04	598 aa		32.21	■■■□□ 2.75
SHF-208	ENST00000560734	SMC4	Q9NTJ3	1288 aa		32.21	■■■□□ 2.75
SHF-208	ENST00000560734	KIF1A	Q12756	1690 aa		32.21	■■■□□ 2.75
SHF-208	ENST00000560734	PSME1	Q06323	249 aa		32.2	■■■□□ 2.75
SHF-208	ENST00000560734	C19orf44	Q9H6X5	657 aa		32.2	■■■□□ 2.75
SHF-208	ENST00000560734	SSH1	Q8WYL5	1049 aa		32.2	■■■□□ 2.74
SHF-208	ENST00000560734	DCC	P43146	1447 aa		32.19	■■■□□ 2.74
SHF-208	ENST00000560734	PHRF1	Q9P1Y6	1649 aa	Known RBP	32.19	■■■□□ 2.74
SHF-208	ENST00000560734	IPO8	O15397	1037 aa	Known RBP	32.18	■■■□□ 2.74
SHF-208	ENST00000560734	PAK3	O75914	559 aa	Predicted RBP	32.18	■■■□□ 2.74
SHF-208	ENST00000560734	HOXC9	P31274	260 aa		32.18	■■■□□ 2.74
SHF-208	ENST00000560734	KCNH5	Q8NCM2	988 aa		32.18	■■■□□ 2.74
SHF-208	ENST00000560734	COG6	Q9Y2V7	657 aa		32.18	■■■□□ 2.74
SHF-208	ENST00000560734	NFAT5	O94916	1531 aa		32.17	■■■□□ 2.74
SHF-208	ENST00000560734	MST1R	Q04912	1400 aa		32.17	■■■□□ 2.74
SHF-208	ENST00000560734	STRC	Q7RTU9	1775 aa		32.16	■■■□□ 2.74
SHF-208	ENST00000560734	SOX12	O15370	315 aa		32.16	■■■□□ 2.74
SHF-208	ENST00000560734	DZIP1L	Q8IYY4	767 aa	Known RBP	32.16	■■■□□ 2.74
SHF-208	ENST00000560734	RBM33	Q96EV2	1170 aa	Known RBP	32.15	■■■□□ 2.74
SHF-208	ENST00000560734	BCL2L13	Q9BXK5	485 aa		32.15	■■■□□ 2.74
SHF-208	ENST00000560734	MVP	Q14764	893 aa	Known RBP	32.14	■■■□□ 2.74
SHF-208	ENST00000560734	ATF7IP	Q6VMQ6	1270 aa		32.14	■■■□□ 2.74
SHF-208	ENST00000560734	EYA1	Q99502	592 aa		32.14	■■■□□ 2.74
SHF-208	ENST00000560734	MBIP	Q9NS73	344 aa		32.14	■■■□□ 2.74
SHF-208	ENST00000560734	C1orf167	Q5SNV9	1468 aa		32.13	■■■□□ 2.73
SHF-208	ENST00000560734	RLBP1	P12271	317 aa		32.13	■■■□□ 2.73
SHF-208	ENST00000560734	ANP32E	Q9BTT0	268 aa		32.13	■■■□□ 2.73
SHF-208	ENST00000560734	VAMP4	O75379	141 aa		32.12	■■■□□ 2.73
SHF-208	ENST00000560734	HAP1	P54257	671 aa	Predicted RBP	32.12	■■■□□ 2.73
SHF-208	ENST00000560734	HTATSF1	O43719	755 aa	Known RBP	32.12	■■■□□ 2.73
SHF-208	ENST00000560734	THUMPD2	Q9BTF0	503 aa	Known RBP	32.12	■■■□□ 2.73
SHF-208	ENST00000560734	SLIT3	O75094	1523 aa		32.11	■■■□□ 2.73
SHF-208	ENST00000560734	FTSJ3	Q8IY81	847 aa	Known RBP	32.11	■■■□□ 2.73
SHF-208	ENST00000560734	GAS2L2	Q8NHY3	880 aa		32.11	■■■□□ 2.73
SHF-208	ENST00000560734	ARHGAP45	Q92619	1136 aa		32.11	■■■□□ 2.73
SHF-208	ENST00000560734	LAS1L	Q9Y4W2	734 aa	Known RBP	32.11	■■■□□ 2.73
SHF-208	ENST00000560734	IP6K1	Q92551	441 aa		32.1	■■■□□ 2.73
SHF-208	ENST00000560734	LTN1	O94822	1766 aa		32.09	■■■□□ 2.73
SHF-208	ENST00000560734	TRIM27	P14373	513 aa		32.09	■■■□□ 2.73
SHF-208	ENST00000560734	TRPM3	Q9HCF6	1732 aa	Predicted RBP	32.09	■■■□□ 2.73
SHF-208	ENST00000560734	CHL1	O00533	1208 aa		32.08	■■■□□ 2.73
SHF-208	ENST00000560734	NUTM2G	Q5VZR2	741 aa		32.08	■■■□□ 2.73
SHF-208	ENST00000560734	ORAI2	Q96SN7	254 aa		32.08	■■■□□ 2.73
SHF-208	ENST00000560734	NOB1	Q9ULX3	412 aa	Known RBP	32.07	■■■□□ 2.72
SHF-208	ENST00000560734	DDX19B	Q9UMR2	479 aa		32.06	■■■□□ 2.72
SHF-208	ENST00000560734	KIAA0232	Q92628	1395 aa		32.06	■■■□□ 2.72
SHF-208	ENST00000560734	FAM83G	A6ND36	823 aa		32.06	■■■□□ 2.72
SHF-208	ENST00000560734	CRB1	P82279	1406 aa		32.04	■■■□□ 2.72
SHF-208	ENST00000560734	TMEM94	Q12767	1356 aa		32.03	■■■□□ 2.72
SHF-208	ENST00000560734	USP19	O94966	1318 aa		32.03	■■■□□ 2.72
SHF-208	ENST00000560734	TNN	Q9UQP3	1299 aa		32.03	■■■□□ 2.72
SHF-208	ENST00000560734	MTHFSD	Q2M296	383 aa	Known RBP	32.03	■■■□□ 2.72
SHF-208	ENST00000560734	TWISTNB	Q3B726	338 aa	Predicted RBP	32.03	■■■□□ 2.72
SHF-208	ENST00000560734	STRCP1	A6NGW2	1772 aa		32.03	■■■□□ 2.72
SHF-208	ENST00000560734	MRPL50	Q8N5N7	158 aa	Known RBP	32.02	■■■□□ 2.72
SHF-208	ENST00000560734	FOXO3	O43524	673 aa		32.01	■■■□□ 2.72
SHF-208	ENST00000560734	ATF3	P18847	181 aa		32.01	■■■□□ 2.72
SHF-208	ENST00000560734	CHMP4B	Q9H444	224 aa	Known RBP	32	■■■□□ 2.71
SHF-208	ENST00000560734	DCTN1	Q14203	1278 aa		32	■■■□□ 2.71
SHF-208	ENST00000560734	RTF1	Q92541	710 aa	Known RBP	32	■■■□□ 2.71
SHF-208	ENST00000560734	IGHD	P01880	384 aa		31.99	■■■□□ 2.71
SHF-208	ENST00000560734	KRT28	Q7Z3Y7	464 aa		31.99	■■■□□ 2.71

Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms