RNA–Protein interactions for RNA: ENST00000558253.5

SPG11-209, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 879 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-209ENST00000558253 MINK1Q8N4C8 1332 aaPredicted RBP10.72□□□□□ -0.69
SPG11-209ENST00000558253 MAPK8IP3Q9UPT6 1336 aa10.72□□□□□ -0.69
SPG11-209ENST00000558253 DIAPH1O60610 1272 aaKnown RBP10.71□□□□□ -0.69
SPG11-209ENST00000558253 CANXP27824 592 aaKnown RBP10.71□□□□□ -0.69
SPG11-209ENST00000558253 TNNT2P45379 298 aaPredicted RBP10.71□□□□□ -0.69
SPG11-209ENST00000558253 CD163L1Q9NR16 1453 aa10.71□□□□□ -0.69
SPG11-209ENST00000558253 ANKRD26Q9UPS8 1709 aa10.71□□□□□ -0.69
SPG11-209ENST00000558253 ADGRB2O60241 1585 aa10.7□□□□□ -0.7
SPG11-209ENST00000558253 NLRP1Q9C000 1473 aa10.7□□□□□ -0.7
SPG11-209ENST00000558253 EDC4Q6P2E9 1401 aaKnown RBP10.7□□□□□ -0.7
SPG11-209ENST00000558253 TNRQ92752 1358 aa10.7□□□□□ -0.7
SPG11-209ENST00000558253 WASLO00401 505 aaPredicted RBP10.7□□□□□ -0.7
SPG11-209ENST00000558253 RARSP54136 660 aaKnown RBP10.7□□□□□ -0.7
SPG11-209ENST00000558253 C20orf194Q5TEA3 1177 aa10.7□□□□□ -0.7
SPG11-209ENST00000558253 PMFBP1Q8TBY8 1022 aa10.7□□□□□ -0.7
SPG11-209ENST00000558253 PLEKHF1Q96S99 279 aa10.7□□□□□ -0.7
SPG11-209ENST00000558253 CABP1Q9NZU7 370 aa10.7□□□□□ -0.7
SPG11-209ENST00000558253 AATKQ6ZMQ8 1374 aa10.69□□□□□ -0.7
SPG11-209ENST00000558253 SAFB2Q14151 953 aaKnown RBP eCLIP10.69□□□□□ -0.7
SPG11-209ENST00000558253 MYO5BQ9ULV0 1848 aa10.69□□□□□ -0.7
SPG11-209ENST00000558253 COL3A1P02461 1466 aaPredicted RBP10.68□□□□□ -0.7
SPG11-209ENST00000558253 CPSF1Q10570 1443 aaKnown RBP10.68□□□□□ -0.7
SPG11-209ENST00000558253 TMEM2Q9UHN6 1383 aa10.68□□□□□ -0.7
SPG11-209ENST00000558253 POTEJP0CG39 1038 aa10.68□□□□□ -0.7
SPG11-209ENST00000558253 TMPOP42166 694 aaKnown RBP10.68□□□□□ -0.7
SPG11-209ENST00000558253 GGNBP2Q9H3C7 697 aa10.68□□□□□ -0.7
SPG11-209ENST00000558253 CHMP4BQ9H444 224 aaKnown RBP10.68□□□□□ -0.7
SPG11-209ENST00000558253 TRIM35Q9UPQ4 493 aa10.68□□□□□ -0.7
SPG11-209ENST00000558253 CDC42BPGQ6DT37 1551 aa10.68□□□□□ -0.7
SPG11-209ENST00000558253 KNDC1Q76NI1 1749 aa10.67□□□□□ -0.7
SPG11-209ENST00000558253 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.67□□□□□ -0.7
SPG11-209ENST00000558253 BCAR3O75815 825 aa10.67□□□□□ -0.7
SPG11-209ENST00000558253 FAM161AQ3B820 660 aa10.67□□□□□ -0.7
SPG11-209ENST00000558253 CLUAP1Q96AJ1 413 aa10.67□□□□□ -0.7
SPG11-209ENST00000558253 ZFP91Q96JP5 570 aaPredicted RBP10.67□□□□□ -0.7
SPG11-209ENST00000558253 TSPOAP1O95153 1857 aa10.66□□□□□ -0.7
SPG11-209ENST00000558253 U2SURPO15042 1029 aaKnown RBP10.66□□□□□ -0.7
SPG11-209ENST00000558253 IPO8O15397 1037 aaKnown RBP10.66□□□□□ -0.7
SPG11-209ENST00000558253 LMOD3Q0VAK6 560 aa10.66□□□□□ -0.7
SPG11-209ENST00000558253 ZKSCAN2Q63HK3 967 aa10.66□□□□□ -0.7
SPG11-209ENST00000558253 SETD1AO15047 1707 aaKnown RBP10.66□□□□□ -0.7
SPG11-209ENST00000558253 PLEKHG1Q9ULL1 1385 aa10.65□□□□□ -0.7
SPG11-209ENST00000558253 CPS1P31327 1500 aa10.65□□□□□ -0.7
SPG11-209ENST00000558253 NEUROD2Q15784 382 aa10.65□□□□□ -0.7
SPG11-209ENST00000558253 ALDH1L2Q3SY69 923 aa10.65□□□□□ -0.7
SPG11-209ENST00000558253 RWDD1Q9H446 243 aaPredicted RBP10.65□□□□□ -0.7
SPG11-209ENST00000558253 BRPF1P55201 1214 aaPredicted RBP10.64□□□□□ -0.71
SPG11-209ENST00000558253 MLECQ14165 292 aa10.64□□□□□ -0.71
SPG11-209ENST00000558253 IER5LQ5T953 404 aa10.64□□□□□ -0.71
SPG11-209ENST00000558253 NUDT16Q96DE0 195 aaKnown RBP10.64□□□□□ -0.71
SPG11-209ENST00000558253 COG3Q96JB2 828 aa10.64□□□□□ -0.71
SPG11-209ENST00000558253 EID1Q9Y6B2 187 aa10.64□□□□□ -0.71
SPG11-209ENST00000558253 PPIP5K1Q6PFW1 1433 aa10.64□□□□□ -0.71
SPG11-209ENST00000558253 METP08581 1390 aa10.64□□□□□ -0.71
SPG11-209ENST00000558253 KIF20BQ96Q89 1820 aa10.63□□□□□ -0.71
SPG11-209ENST00000558253 KIF13AQ9H1H9 1805 aa10.63□□□□□ -0.71
SPG11-209ENST00000558253 CDK12Q9NYV4 1490 aaPredicted RBP10.63□□□□□ -0.71
SPG11-209ENST00000558253 PLEKHG3A1L390 1219 aa10.63□□□□□ -0.71
SPG11-209ENST00000558253 HAP1P54257 671 aaPredicted RBP10.63□□□□□ -0.71
SPG11-209ENST00000558253 RIPK4P57078 832 aa10.63□□□□□ -0.71
SPG11-209ENST00000558253 WAPLQ7Z5K2 1190 aa10.63□□□□□ -0.71
SPG11-209ENST00000558253 POLKQ9UBT6 870 aa10.63□□□□□ -0.71
SPG11-209ENST00000558253 RRP7AQ9Y3A4 280 aaKnown RBP10.63□□□□□ -0.71
SPG11-209ENST00000558253 NRXN3Q9Y4C0 1643 aa10.62□□□□□ -0.71
SPG11-209ENST00000558253 KIF16BQ96L93 1317 aa10.62□□□□□ -0.71
SPG11-209ENST00000558253 MVPQ14764 893 aaKnown RBP10.62□□□□□ -0.71
SPG11-209ENST00000558253 MAMSTRQ6ZN01 415 aa10.62□□□□□ -0.71
SPG11-209ENST00000558253 DZIP1LQ8IYY4 767 aaKnown RBP10.62□□□□□ -0.71
SPG11-209ENST00000558253 POTEFA5A3E0 1075 aa10.61□□□□□ -0.71
SPG11-209ENST00000558253 PPM1GO15355 546 aaPredicted RBP10.61□□□□□ -0.71
SPG11-209ENST00000558253 NFE2L2Q16236 605 aa10.61□□□□□ -0.71
SPG11-209ENST00000558253 FTSJ3Q8IY81 847 aaKnown RBP10.61□□□□□ -0.71
SPG11-209ENST00000558253 ARHGAP45Q92619 1136 aa10.61□□□□□ -0.71
SPG11-209ENST00000558253 FRAT1Q92837 279 aaPredicted RBP10.61□□□□□ -0.71
SPG11-209ENST00000558253 RSPH6AQ9H0K4 717 aa10.61□□□□□ -0.71
SPG11-209ENST00000558253 USP35Q9P2H5 1018 aa10.61□□□□□ -0.71
SPG11-209ENST00000558253 DDX19BQ9UMR2 479 aa10.61□□□□□ -0.71
SPG11-209ENST00000558253 TBX22Q9Y458 520 aa10.61□□□□□ -0.71
SPG11-209ENST00000558253 GNAI1P63096 354 aa10.6□□□□□ -0.71
SPG11-209ENST00000558253 TXNDC2Q86VQ3 553 aa10.6□□□□□ -0.71
SPG11-209ENST00000558253 THEMISQ8N1K5 641 aaPredicted RBP10.6□□□□□ -0.71
SPG11-209ENST00000558253 COG6Q9Y2V7 657 aa10.6□□□□□ -0.71
SPG11-209ENST00000558253 UBR1Q8IWV7 1749 aa10.59□□□□□ -0.71
SPG11-209ENST00000558253 STK25O00506 426 aa10.59□□□□□ -0.71
SPG11-209ENST00000558253 IL13P35225 146 aa10.59□□□□□ -0.71
SPG11-209ENST00000558253 HDAC1Q13547 482 aaPredicted RBP10.59□□□□□ -0.71
SPG11-209ENST00000558253 ATF7IPQ6VMQ6 1270 aa10.59□□□□□ -0.71
SPG11-209ENST00000558253 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.59□□□□□ -0.71
SPG11-209ENST00000558253 PANK1Q8TE04 598 aa10.59□□□□□ -0.71
SPG11-209ENST00000558253 BCL11BQ9C0K0 894 aaPredicted RBP10.59□□□□□ -0.71
SPG11-209ENST00000558253 IFT57Q9NWB7 429 aa10.59□□□□□ -0.71
SPG11-209ENST00000558253 DAXXQ9UER7 740 aaPredicted RBP10.59□□□□□ -0.71
SPG11-209ENST00000558253 TTC21AQ8NDW8 1320 aa10.58□□□□□ -0.71
SPG11-209ENST00000558253 ADAMTS13Q76LX8 1427 aa10.58□□□□□ -0.72
SPG11-209ENST00000558253 SLIT1O75093 1534 aa10.58□□□□□ -0.72
SPG11-209ENST00000558253 DIP2AQ14689 1571 aa10.58□□□□□ -0.72
SPG11-209ENST00000558253 ARHGAP23Q9P227 1491 aa10.58□□□□□ -0.72
SPG11-209ENST00000558253 EXOSC9Q06265 439 aaKnown RBP10.58□□□□□ -0.72
SPG11-209ENST00000558253 SMC4Q9NTJ3 1288 aa10.58□□□□□ -0.72
SPG11-209ENST00000558253 PIK3R4Q99570 1358 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms