RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 GRM5P41594 1212 aa9.5□□□□□ -0.89
SCFD1-221ENST00000556534 NBPF20Q3BBV1 942 aa9.5□□□□□ -0.89
SCFD1-221ENST00000556534 ZNF592Q92610 1267 aa9.5□□□□□ -0.89
SCFD1-221ENST00000556534 KCTD15Q96SI1 283 aaPredicted RBP9.5□□□□□ -0.89
SCFD1-221ENST00000556534 IRX2Q9BZI1 471 aaPredicted RBP9.5□□□□□ -0.89
SCFD1-221ENST00000556534 NR3C2P08235 984 aa9.49□□□□□ -0.89
SCFD1-221ENST00000556534 MCCD1P59942 119 aaPredicted RBP9.49□□□□□ -0.89
SCFD1-221ENST00000556534 FAM187AA6NFU0 413 aa9.48□□□□□ -0.89
SCFD1-221ENST00000556534 LAPTM4AQ15012 233 aa9.48□□□□□ -0.89
SCFD1-221ENST00000556534 INTS6LQ5JSJ4 861 aaKnown RBP9.48□□□□□ -0.89
SCFD1-221ENST00000556534 ALG2Q9H553 416 aa9.48□□□□□ -0.89
SCFD1-221ENST00000556534 NR5A1Q13285 461 aa9.47□□□□□ -0.89
SCFD1-221ENST00000556534 NNTQ13423 1086 aa9.47□□□□□ -0.89
SCFD1-221ENST00000556534 WASF2Q9Y6W5 498 aa9.47□□□□□ -0.89
SCFD1-221ENST00000556534 GIGYF1O75420 1035 aaPredicted RBP9.46□□□□□ -0.9
SCFD1-221ENST00000556534 ERICH6Q7L0X2 663 aa9.46□□□□□ -0.9
SCFD1-221ENST00000556534 SEMA3FQ13275 785 aa9.45□□□□□ -0.9
SCFD1-221ENST00000556534 HPS1Q92902 700 aa9.45□□□□□ -0.9
SCFD1-221ENST00000556534 GLMNQ92990 594 aa9.45□□□□□ -0.9
SCFD1-221ENST00000556534 CEP126Q9P2H0 1117 aa9.45□□□□□ -0.9
SCFD1-221ENST00000556534 SEPT12Q8IYM1 358 aa9.44□□□□□ -0.9
SCFD1-221ENST00000556534 DGAT1O75907 488 aa9.43□□□□□ -0.9
SCFD1-221ENST00000556534 AVPP01185 164 aa9.43□□□□□ -0.9
SCFD1-221ENST00000556534 CCDC116Q8IYX3 515 aa9.43□□□□□ -0.9
SCFD1-221ENST00000556534 KLF16Q9BXK1 252 aaPredicted RBP9.43□□□□□ -0.9
SCFD1-221ENST00000556534 RAB15P59190 212 aa9.42□□□□□ -0.9
SCFD1-221ENST00000556534 PKDCCQ504Y2 493 aa9.42□□□□□ -0.9
SCFD1-221ENST00000556534 HDGFL1Q5TGJ6 251 aa9.42□□□□□ -0.9
SCFD1-221ENST00000556534 PHTF2Q8N3S3 785 aa9.42□□□□□ -0.9
SCFD1-221ENST00000556534 UCN2Q96RP3 112 aa9.42□□□□□ -0.9
SCFD1-221ENST00000556534 ZNF777Q9ULD5 760 aaPredicted RBP9.42□□□□□ -0.9
SCFD1-221ENST00000556534 PIK3CDO00329 1044 aa9.41□□□□□ -0.9
SCFD1-221ENST00000556534 PPP1R26Q5T8A7 1209 aaPredicted RBP9.41□□□□□ -0.9
SCFD1-221ENST00000556534 ERVH48-1M5A8F1 160 aa9.4□□□□□ -0.9
SCFD1-221ENST00000556534 TIMP2P16035 220 aa9.4□□□□□ -0.9
SCFD1-221ENST00000556534 CCDC85AQ96PX6 553 aaPredicted RBP9.4□□□□□ -0.9
SCFD1-221ENST00000556534 CHIC2Q9UKJ5 165 aa9.4□□□□□ -0.9
SCFD1-221ENST00000556534 DHX9Q08211 1270 aaKnown RBP9.39□□□□□ -0.91
SCFD1-221ENST00000556534 SLFNL1Q499Z3 407 aa9.39□□□□□ -0.91
SCFD1-221ENST00000556534 RNF20Q5VTR2 975 aa9.39□□□□□ -0.91
SCFD1-221ENST00000556534 RNF135Q8IUD6 432 aa9.39□□□□□ -0.91
SCFD1-221ENST00000556534 EMILIN1Q9Y6C2 1016 aa9.39□□□□□ -0.91
SCFD1-221ENST00000556534 LCE2BO14633 110 aa9.38□□□□□ -0.91
SCFD1-221ENST00000556534 WDR4P57081 412 aaKnown RBP9.38□□□□□ -0.91
SCFD1-221ENST00000556534 CCDC125Q86Z20 511 aa9.38□□□□□ -0.91
SCFD1-221ENST00000556534 CRIPAKQ8N1N5 446 aa9.38□□□□□ -0.91
SCFD1-221ENST00000556534 ITPKCQ96DU7 683 aa9.38□□□□□ -0.91
SCFD1-221ENST00000556534 CALR3Q96L12 384 aaKnown RBP9.38□□□□□ -0.91
SCFD1-221ENST00000556534 ZFAND3Q9H8U3 227 aa9.38□□□□□ -0.91
SCFD1-221ENST00000556534 TMPRSS4Q9NRS4 437 aa9.38□□□□□ -0.91
SCFD1-221ENST00000556534 ZIC2O95409 532 aaPredicted RBP9.37□□□□□ -0.91
SCFD1-221ENST00000556534 SMCPP49901 116 aaPredicted RBP9.37□□□□□ -0.91
SCFD1-221ENST00000556534 MYT1Q01538 1121 aa9.37□□□□□ -0.91
SCFD1-221ENST00000556534 ZNF784Q8NCA9 323 aaPredicted RBP9.37□□□□□ -0.91
SCFD1-221ENST00000556534 PCDHB11Q9Y5F2 797 aa9.37□□□□□ -0.91
SCFD1-221ENST00000556534 ARID3CA6NKF2 412 aa9.36□□□□□ -0.91
SCFD1-221ENST00000556534 CTC1Q2NKJ3 1217 aa9.36□□□□□ -0.91
SCFD1-221ENST00000556534 TRAF7Q6Q0C0 670 aa9.36□□□□□ -0.91
SCFD1-221ENST00000556534 NFATC2IPQ8NCF5 419 aa9.36□□□□□ -0.91
SCFD1-221ENST00000556534 C1orf115Q9H7X2 142 aa9.36□□□□□ -0.91
SCFD1-221ENST00000556534 PGPEP1Q9NXJ5 209 aa9.36□□□□□ -0.91
SCFD1-221ENST00000556534 ST8SIA5O15466 376 aa9.35□□□□□ -0.91
SCFD1-221ENST00000556534 LILRA1O75019 489 aa9.35□□□□□ -0.91
SCFD1-221ENST00000556534 TSGA10IPQ3SY00 556 aa9.35□□□□□ -0.91
SCFD1-221ENST00000556534 Q6ZNB5 142 aa9.35□□□□□ -0.91
SCFD1-221ENST00000556534 PLPP7Q8NBV4 271 aa9.35□□□□□ -0.91
SCFD1-221ENST00000556534 CAPN5O15484 640 aaPredicted RBP9.34□□□□□ -0.91
SCFD1-221ENST00000556534 SCTRP47872 440 aa9.34□□□□□ -0.91
SCFD1-221ENST00000556534 ERVK-9P63128 1117 aa9.34□□□□□ -0.91
SCFD1-221ENST00000556534 TBC1D9Q6ZT07 1266 aa9.34□□□□□ -0.91
SCFD1-221ENST00000556534 CDCA7Q9BWT1 371 aaPredicted RBP9.34□□□□□ -0.91
SCFD1-221ENST00000556534 CYLDQ9NQC7 956 aa9.34□□□□□ -0.91
SCFD1-221ENST00000556534 DOLKQ9UPQ8 538 aa9.34□□□□□ -0.91
SCFD1-221ENST00000556534 SKIP12755 728 aa9.33□□□□□ -0.92
SCFD1-221ENST00000556534 MEIOBQ8N635 442 aa9.33□□□□□ -0.92
SCFD1-221ENST00000556534 AAASQ9NRG9 546 aa9.33□□□□□ -0.92
SCFD1-221ENST00000556534 USP17L5A8MUK1 530 aa9.32□□□□□ -0.92
SCFD1-221ENST00000556534 AXIN1O15169 862 aa9.32□□□□□ -0.92
SCFD1-221ENST00000556534 ATP9BO43861 1147 aa9.32□□□□□ -0.92
SCFD1-221ENST00000556534 CBLBQ13191 982 aa9.32□□□□□ -0.92
SCFD1-221ENST00000556534 MAP7D1Q3KQU3 841 aa9.32□□□□□ -0.92
SCFD1-221ENST00000556534 Q6ZVU0 165 aa9.32□□□□□ -0.92
SCFD1-221ENST00000556534 CC2D2BQ6DHV5 1058 aa9.31□□□□□ -0.92
SCFD1-221ENST00000556534 PPP1R12CQ9BZL4 782 aa9.31□□□□□ -0.92
SCFD1-221ENST00000556534 USP17L3A6NCW0 530 aa9.3□□□□□ -0.92
SCFD1-221ENST00000556534 USP17L4A6NCW7 530 aa9.3□□□□□ -0.92
SCFD1-221ENST00000556534 PALM3A6NDB9 673 aaPredicted RBP9.3□□□□□ -0.92
SCFD1-221ENST00000556534 BMP1P13497 986 aa9.3□□□□□ -0.92
SCFD1-221ENST00000556534 ADD1P35611 737 aaKnown RBP9.3□□□□□ -0.92
SCFD1-221ENST00000556534 OXLD1Q5BKU9 147 aa9.3□□□□□ -0.92
SCFD1-221ENST00000556534 USP17L2Q6R6M4 530 aa9.3□□□□□ -0.92
SCFD1-221ENST00000556534 USP17L1Q7RTZ2 530 aa9.3□□□□□ -0.92
SCFD1-221ENST00000556534 PLEKHM2Q8IWE5 1019 aa9.3□□□□□ -0.92
SCFD1-221ENST00000556534 MAFBQ9Y5Q3 323 aaPredicted RBP9.3□□□□□ -0.92
SCFD1-221ENST00000556534 ADH1AP07327 375 aa9.29□□□□□ -0.92
SCFD1-221ENST00000556534 NCOA4Q13772 614 aa9.29□□□□□ -0.92
SCFD1-221ENST00000556534 TRIM46Q7Z4K8 759 aa9.29□□□□□ -0.92
SCFD1-221ENST00000556534 OSBPL3Q9H4L5 887 aa9.29□□□□□ -0.92
SCFD1-221ENST00000556534 DACH1Q9UI36 760 aa9.29□□□□□ -0.92
SCFD1-221ENST00000556534 SUPT5HO00267 1087 aaKnown RBP9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 120 ms