RNA–Protein interactions for RNA: ENST00000555759.1

SYNE3-204, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 2

Gene SYNE3, Length 5,493 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-204ENST00000555759 RPAP2Q8IXW5 612 aaPredicted RBP20.72■□□□□ 0.91
SYNE3-204ENST00000555759 GIMAP7Q8NHV1 300 aa20.72■□□□□ 0.91
SYNE3-204ENST00000555759 MAGEC2Q9UBF1 373 aaPredicted RBP20.72■□□□□ 0.91
SYNE3-204ENST00000555759 ZSCAN12O43309 604 aa20.71■□□□□ 0.91
SYNE3-204ENST00000555759 TSR2Q969E8 191 aaKnown RBP20.71■□□□□ 0.91
SYNE3-204ENST00000555759 TIGD1Q96MW7 591 aa20.71■□□□□ 0.91
SYNE3-204ENST00000555759 JPH4Q96JJ6 628 aa20.71■□□□□ 0.91
SYNE3-204ENST00000555759 TBC1D32Q96NH3 1257 aa20.71■□□□□ 0.91
SYNE3-204ENST00000555759 GTPBP4Q9BZE4 634 aaKnown RBP20.71■□□□□ 0.91
SYNE3-204ENST00000555759 GGNBP2Q9H3C7 697 aa20.71■□□□□ 0.91
SYNE3-204ENST00000555759 NKTRP30414 1462 aaKnown RBP20.71■□□□□ 0.91
SYNE3-204ENST00000555759 TNNT1P13805 278 aa20.71■□□□□ 0.91
SYNE3-204ENST00000555759 SSFA2P28290 1259 aa20.71■□□□□ 0.91
SYNE3-204ENST00000555759 LUC7LQ9NQ29 371 aaKnown RBP20.7■□□□□ 0.9
SYNE3-204ENST00000555759 EID1Q9Y6B2 187 aa20.7■□□□□ 0.9
SYNE3-204ENST00000555759 ERBINQ96RT1 1412 aa20.7■□□□□ 0.9
SYNE3-204ENST00000555759 ZRSR2Q15696 482 aaKnown RBP20.7■□□□□ 0.9
SYNE3-204ENST00000555759 HS1BP3Q53T59 392 aa20.7■□□□□ 0.9
SYNE3-204ENST00000555759 SFPQP23246 707 aaKnown RBP eCLIP20.7■□□□□ 0.9
SYNE3-204ENST00000555759 POLA1P09884 1462 aaPredicted RBP20.69■□□□□ 0.9
SYNE3-204ENST00000555759 LRPPRCP42704 1394 aaKnown RBP20.69■□□□□ 0.9
SYNE3-204ENST00000555759 TTC5Q8N0Z6 440 aa20.69■□□□□ 0.9
SYNE3-204ENST00000555759 CEBPZQ03701 1054 aaKnown RBP20.69■□□□□ 0.9
SYNE3-204ENST00000555759 PAXBP1Q9Y5B6 917 aa20.69■□□□□ 0.9
SYNE3-204ENST00000555759 SHTN1A0MZ66 631 aa20.68■□□□□ 0.9
SYNE3-204ENST00000555759 PDRG1Q9NUG6 133 aa20.68■□□□□ 0.9
SYNE3-204ENST00000555759 ZNF644Q9H582 1327 aaPredicted RBP20.68■□□□□ 0.9
SYNE3-204ENST00000555759 NCBP3Q53F19 620 aaKnown RBP20.68■□□□□ 0.9
SYNE3-204ENST00000555759 BMS1Q14692 1282 aaKnown RBP20.68■□□□□ 0.9
SYNE3-204ENST00000555759 SKIDA1Q1XH10 827 aa20.68■□□□□ 0.9
SYNE3-204ENST00000555759 WWC1Q8IX03 1113 aa20.68■□□□□ 0.9
SYNE3-204ENST00000555759 MCM3P25205 808 aa20.67■□□□□ 0.9
SYNE3-204ENST00000555759 CCDC181Q5TID7 509 aa20.67■□□□□ 0.9
SYNE3-204ENST00000555759 PRKAR2BP31323 418 aa20.67■□□□□ 0.9
SYNE3-204ENST00000555759 FAM177A1Q8N128 213 aaPredicted RBP20.67■□□□□ 0.9
SYNE3-204ENST00000555759 NOL10Q9BSC4 688 aaKnown RBP20.67■□□□□ 0.9
SYNE3-204ENST00000555759 SCAND2PQ9GZW5 306 aaPredicted RBP20.67■□□□□ 0.9
SYNE3-204ENST00000555759 TIAM1Q13009 1591 aa20.67■□□□□ 0.9
SYNE3-204ENST00000555759 EPS15P42566 896 aa20.67■□□□□ 0.9
SYNE3-204ENST00000555759 WASHC4Q2M389 1173 aa20.67■□□□□ 0.9
SYNE3-204ENST00000555759 C20orf194Q5TEA3 1177 aa20.67■□□□□ 0.9
SYNE3-204ENST00000555759 USP25Q9UHP3 1055 aa20.67■□□□□ 0.9
SYNE3-204ENST00000555759 MAP9Q49MG5 647 aa20.66■□□□□ 0.9
SYNE3-204ENST00000555759 BAG4O95429 457 aaKnown RBP20.66■□□□□ 0.9
SYNE3-204ENST00000555759 TXLNAP40222 546 aa20.66■□□□□ 0.9
SYNE3-204ENST00000555759 SART3Q15020 963 aaKnown RBP20.66■□□□□ 0.9
SYNE3-204ENST00000555759 BLOC1S2Q6QNY1 142 aa20.66■□□□□ 0.9
SYNE3-204ENST00000555759 BRPF1P55201 1214 aaPredicted RBP20.65■□□□□ 0.9
SYNE3-204ENST00000555759 CRACR2AQ9BSW2 395 aa20.65■□□□□ 0.9
SYNE3-204ENST00000555759 DNAJC2Q99543 621 aaKnown RBP20.65■□□□□ 0.9
SYNE3-204ENST00000555759 ANO10Q9NW15 660 aa20.65■□□□□ 0.9
SYNE3-204ENST00000555759 EHBP1L1Q8N3D4 1523 aa20.65■□□□□ 0.9
SYNE3-204ENST00000555759 KRT222Q8N1A0 295 aa20.65■□□□□ 0.9
SYNE3-204ENST00000555759 TMX4Q9H1E5 349 aaPredicted RBP20.65■□□□□ 0.9
SYNE3-204ENST00000555759 INCENPQ9NQS7 918 aa20.65■□□□□ 0.9
SYNE3-204ENST00000555759 MAPK8IP2Q13387 824 aaPredicted RBP20.64■□□□□ 0.9
SYNE3-204ENST00000555759 KRT32Q14532 448 aa20.64■□□□□ 0.9
SYNE3-204ENST00000555759 CLIP2Q9UDT6 1046 aa20.64■□□□□ 0.89
SYNE3-204ENST00000555759 POTEB2H3BUK9 544 aa20.64■□□□□ 0.89
SYNE3-204ENST00000555759 GSDMDP57764 484 aa20.64■□□□□ 0.89
SYNE3-204ENST00000555759 CT47A1Q5JQC4 288 aaPredicted RBP20.64■□□□□ 0.89
SYNE3-204ENST00000555759 NEUROD6Q96NK8 337 aa20.63■□□□□ 0.89
SYNE3-204ENST00000555759 CTAGE5O15320 804 aa20.63■□□□□ 0.89
SYNE3-204ENST00000555759 CCDC148Q8NFR7 591 aa20.63■□□□□ 0.89
SYNE3-204ENST00000555759 DDX11Q96FC9 970 aa20.63■□□□□ 0.89
SYNE3-204ENST00000555759 NCOA1Q15788 1441 aa20.63■□□□□ 0.89
SYNE3-204ENST00000555759 ADCY5O95622 1261 aa20.63■□□□□ 0.89
SYNE3-204ENST00000555759 ARHGAP29Q52LW3 1261 aa20.63■□□□□ 0.89
SYNE3-204ENST00000555759 LRSAM1Q6UWE0 723 aa20.63■□□□□ 0.89
SYNE3-204ENST00000555759 RARSP54136 660 aaKnown RBP20.62■□□□□ 0.89
SYNE3-204ENST00000555759 CCDC94Q9BW85 323 aaPredicted RBP20.62■□□□□ 0.89
SYNE3-204ENST00000555759 EFCAB5A4FU69 1503 aa20.62■□□□□ 0.89
SYNE3-204ENST00000555759 CAVIN2O95810 425 aa20.62■□□□□ 0.89
SYNE3-204ENST00000555759 HSP90AB2PQ58FF8 381 aa20.62■□□□□ 0.89
SYNE3-204ENST00000555759 GAS2L2Q8NHY3 880 aa20.62■□□□□ 0.89
SYNE3-204ENST00000555759 ZKSCAN5Q9Y2L8 839 aa20.62■□□□□ 0.89
SYNE3-204ENST00000555759 CFTRP13569 1480 aa20.62■□□□□ 0.89
SYNE3-204ENST00000555759 TMEM57Q8N5G2 664 aa20.62■□□□□ 0.89
SYNE3-204ENST00000555759 GTF2F1P35269 517 aaKnown RBP eCLIP20.61■□□□□ 0.89
SYNE3-204ENST00000555759 PLCD4Q9BRC7 762 aa20.61■□□□□ 0.89
SYNE3-204ENST00000555759 EPB41L2O43491 1005 aaKnown RBP20.61■□□□□ 0.89
SYNE3-204ENST00000555759 ZSCAN23Q3MJ62 389 aa20.61■□□□□ 0.89
SYNE3-204ENST00000555759 SMAP1Q8IYB5 467 aaPredicted RBP20.61■□□□□ 0.89
SYNE3-204ENST00000555759 RIC3Q7Z5B4 369 aa20.61■□□□□ 0.89
SYNE3-204ENST00000555759 JAKMIP1Q96N16 626 aaKnown RBP20.61■□□□□ 0.89
SYNE3-204ENST00000555759 SH2B1Q9NRF2 756 aaPredicted RBP20.61■□□□□ 0.89
SYNE3-204ENST00000555759 STIM1Q13586 685 aa20.61■□□□□ 0.89
SYNE3-204ENST00000555759 C16orf45Q96MC5 204 aaPredicted RBP20.61■□□□□ 0.89
SYNE3-204ENST00000555759 SKAP1Q86WV1 359 aa20.6■□□□□ 0.89
SYNE3-204ENST00000555759 JAKMIP3Q5VZ66 844 aa20.6■□□□□ 0.89
SYNE3-204ENST00000555759 URI1O94763 535 aaPredicted RBP20.6■□□□□ 0.89
SYNE3-204ENST00000555759 DDX19AQ9NUU7 478 aaKnown RBP20.6■□□□□ 0.89
SYNE3-204ENST00000555759 NUTM2FA1L443 756 aa20.6■□□□□ 0.89
SYNE3-204ENST00000555759 CASQ1P31415 396 aa20.6■□□□□ 0.89
SYNE3-204ENST00000555759 STK3Q13188 491 aa20.59■□□□□ 0.89
SYNE3-204ENST00000555759 CFAP100Q494V2 611 aa20.59■□□□□ 0.89
SYNE3-204ENST00000555759 MICALCLQ6ZW33 695 aa20.59■□□□□ 0.89
SYNE3-204ENST00000555759 FGD5Q6ZNL6 1462 aa20.59■□□□□ 0.89
SYNE3-204ENST00000555759 SPDYE4A6NLX3 237 aa20.59■□□□□ 0.89
SYNE3-204ENST00000555759 SLC4A2P04920 1241 aa20.59■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 658.4 ms