RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 BRPF3Q9ULD4 1205 aa19.8■□□□□ 0.76
CUX1-213ENST00000549414 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP19.8■□□□□ 0.76
CUX1-213ENST00000549414 SIL1Q9H173 461 aa19.8■□□□□ 0.76
CUX1-213ENST00000549414 TRAK2O60296 914 aa19.79■□□□□ 0.76
CUX1-213ENST00000549414 MYL6BP14649 208 aa19.79■□□□□ 0.76
CUX1-213ENST00000549414 ABCC11Q96J66 1382 aa19.79■□□□□ 0.76
CUX1-213ENST00000549414 FOSBP53539 338 aa19.78■□□□□ 0.76
CUX1-213ENST00000549414 NUCB2P80303 420 aa19.78■□□□□ 0.76
CUX1-213ENST00000549414 HSP90AB2PQ58FF8 381 aa19.78■□□□□ 0.76
CUX1-213ENST00000549414 COL17A1Q9UMD9 1497 aaPredicted RBP19.78■□□□□ 0.76
CUX1-213ENST00000549414 ACEP12821 1306 aa19.78■□□□□ 0.76
CUX1-213ENST00000549414 ANKRD36BQ8N2N9 1353 aa19.78■□□□□ 0.76
CUX1-213ENST00000549414 LRRCC1Q9C099 1032 aa19.78■□□□□ 0.76
CUX1-213ENST00000549414 MBIPQ9NS73 344 aa19.77■□□□□ 0.76
CUX1-213ENST00000549414 GNAT3A8MTJ3 354 aa19.77■□□□□ 0.76
CUX1-213ENST00000549414 SRGAP3O43295 1099 aa19.77■□□□□ 0.76
CUX1-213ENST00000549414 NRDCO43847 1150 aa19.77■□□□□ 0.76
CUX1-213ENST00000549414 CHAF1AQ13111 956 aaPredicted RBP19.77■□□□□ 0.76
CUX1-213ENST00000549414 SPATA31E1Q6ZUB1 1445 aa19.77■□□□□ 0.75
CUX1-213ENST00000549414 ABCC10Q5T3U5 1492 aa19.77■□□□□ 0.75
CUX1-213ENST00000549414 RLBP1P12271 317 aa19.76■□□□□ 0.75
CUX1-213ENST00000549414 SF3A1Q15459 793 aaKnown RBP19.76■□□□□ 0.75
CUX1-213ENST00000549414 SMC3Q9UQE7 1217 aa19.76■□□□□ 0.75
CUX1-213ENST00000549414 CFAP65Q6ZU64 1925 aaKnown RBP19.76■□□□□ 0.75
CUX1-213ENST00000549414 CSPP1Q1MSJ5 1256 aa19.76■□□□□ 0.75
CUX1-213ENST00000549414 ALDH1L2Q3SY69 923 aa19.76■□□□□ 0.75
CUX1-213ENST00000549414 FSD1Q9BTV5 496 aa19.76■□□□□ 0.75
CUX1-213ENST00000549414 DMRT2Q9Y5R5 561 aa19.76■□□□□ 0.75
CUX1-213ENST00000549414 NSD2O96028 1365 aa19.76■□□□□ 0.75
CUX1-213ENST00000549414 FAM177BA6PVY3 158 aa19.76■□□□□ 0.75
CUX1-213ENST00000549414 AEBP1Q8IUX7 1158 aa19.76■□□□□ 0.75
CUX1-213ENST00000549414 APPP05067 770 aa19.75■□□□□ 0.75
CUX1-213ENST00000549414 POGZQ7Z3K3 1410 aa19.75■□□□□ 0.75
CUX1-213ENST00000549414 TATP17735 454 aaPredicted RBP19.75■□□□□ 0.75
CUX1-213ENST00000549414 PHF23Q9BUL5 403 aaPredicted RBP19.75■□□□□ 0.75
CUX1-213ENST00000549414 BTBD11A6QL63 1104 aa19.75■□□□□ 0.75
CUX1-213ENST00000549414 KLHL34Q8N239 644 aa19.75■□□□□ 0.75
CUX1-213ENST00000549414 CNTROBQ8N137 903 aa19.74■□□□□ 0.75
CUX1-213ENST00000549414 DDX54Q8TDD1 881 aaKnown RBP19.74■□□□□ 0.75
CUX1-213ENST00000549414 ATP6V1DQ9Y5K8 247 aa19.74■□□□□ 0.75
CUX1-213ENST00000549414 PHF14O94880 888 aa19.74■□□□□ 0.75
CUX1-213ENST00000549414 RABEP1Q15276 862 aa19.74■□□□□ 0.75
CUX1-213ENST00000549414 RPAP2Q8IXW5 612 aaPredicted RBP19.74■□□□□ 0.75
CUX1-213ENST00000549414 POLKQ9UBT6 870 aa19.74■□□□□ 0.75
CUX1-213ENST00000549414 GCC2Q8IWJ2 1684 aa19.73■□□□□ 0.75
CUX1-213ENST00000549414 RNF20Q5VTR2 975 aa19.73■□□□□ 0.75
CUX1-213ENST00000549414 PHF8Q9UPP1 1060 aa19.73■□□□□ 0.75
CUX1-213ENST00000549414 MBD5Q9P267 1494 aa19.73■□□□□ 0.75
CUX1-213ENST00000549414 DNAJC2Q99543 621 aaKnown RBP19.72■□□□□ 0.75
CUX1-213ENST00000549414 IL27Q8NEV9 243 aa19.72■□□□□ 0.75
CUX1-213ENST00000549414 POLR3AO14802 1390 aaPredicted RBP19.71■□□□□ 0.75
CUX1-213ENST00000549414 KIF3AQ9Y496 699 aa19.71■□□□□ 0.75
CUX1-213ENST00000549414 CCDC27Q2M243 656 aa19.71■□□□□ 0.75
CUX1-213ENST00000549414 MPRIPQ6WCQ1 1025 aa19.71■□□□□ 0.75
CUX1-213ENST00000549414 NUTM1Q86Y26 1132 aa19.71■□□□□ 0.75
CUX1-213ENST00000549414 RNF214Q8ND24 703 aa19.71■□□□□ 0.75
CUX1-213ENST00000549414 PRDM11Q9NQV5 511 aa19.71■□□□□ 0.75
CUX1-213ENST00000549414 PHACTR3Q96KR7 559 aa19.7■□□□□ 0.74
CUX1-213ENST00000549414 CAVIN1Q6NZI2 390 aaKnown RBP19.7■□□□□ 0.74
CUX1-213ENST00000549414 TOM1L2Q6ZVM7 507 aa19.7■□□□□ 0.74
CUX1-213ENST00000549414 A0A1W2PP64 1363 aa19.7■□□□□ 0.74
CUX1-213ENST00000549414 RBM42Q9BTD8 480 aaKnown RBP19.7■□□□□ 0.74
CUX1-213ENST00000549414 K7ELQ4 463 aaPredicted RBP19.69■□□□□ 0.74
CUX1-213ENST00000549414 PRPF40AO75400 957 aaKnown RBP19.69■□□□□ 0.74
CUX1-213ENST00000549414 WASHC4Q2M389 1173 aa19.69■□□□□ 0.74
CUX1-213ENST00000549414 EIF2AK4Q9P2K8 1649 aaKnown RBP19.69■□□□□ 0.74
CUX1-213ENST00000549414 KRT24Q2M2I5 525 aa19.68■□□□□ 0.74
CUX1-213ENST00000549414 C8orf58Q8NAV2 365 aa19.68■□□□□ 0.74
CUX1-213ENST00000549414 CABP4P57796 275 aa19.68■□□□□ 0.74
CUX1-213ENST00000549414 TSPYL6Q8N831 410 aa19.68■□□□□ 0.74
CUX1-213ENST00000549414 TNRQ92752 1358 aa19.67■□□□□ 0.74
CUX1-213ENST00000549414 PIK3C2GO75747 1445 aa19.67■□□□□ 0.74
CUX1-213ENST00000549414 ANXA1P04083 346 aa19.67■□□□□ 0.74
CUX1-213ENST00000549414 TAF7Q15545 349 aaPredicted RBP19.67■□□□□ 0.74
CUX1-213ENST00000549414 TBC1D2Q9BYX2 928 aa19.67■□□□□ 0.74
CUX1-213ENST00000549414 TTC21BQ7Z4L5 1316 aa19.66■□□□□ 0.74
CUX1-213ENST00000549414 TSHZ3Q63HK5 1081 aa19.66■□□□□ 0.74
CUX1-213ENST00000549414 BICD2Q8TD16 824 aa19.66■□□□□ 0.74
CUX1-213ENST00000549414 PPIP5K1Q6PFW1 1433 aa19.66■□□□□ 0.74
CUX1-213ENST00000549414 RIMS2Q9UQ26 1411 aa19.66■□□□□ 0.74
CUX1-213ENST00000549414 PPP6R1Q9UPN7 881 aa19.66■□□□□ 0.74
CUX1-213ENST00000549414 MAST1Q9Y2H9 1570 aa19.66■□□□□ 0.74
CUX1-213ENST00000549414 ATP7AQ04656 1500 aa19.65■□□□□ 0.74
CUX1-213ENST00000549414 CPLX1O14810 134 aa19.65■□□□□ 0.74
CUX1-213ENST00000549414 MCM4P33991 863 aa19.65■□□□□ 0.74
CUX1-213ENST00000549414 CWC27Q6UX04 472 aaKnown RBP19.65■□□□□ 0.74
CUX1-213ENST00000549414 UPF3BQ9BZI7 483 aaKnown RBP19.65■□□□□ 0.74
CUX1-213ENST00000549414 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.65■□□□□ 0.743e-7■■■□□ 18.3
CUX1-213ENST00000549414 AACSQ86V21 672 aa19.65■□□□□ 0.74
CUX1-213ENST00000549414 UHRF1BP1LA0JNW5 1464 aa19.64■□□□□ 0.74
CUX1-213ENST00000549414 LRRFIP2Q9Y608 721 aaKnown RBP19.64■□□□□ 0.73
CUX1-213ENST00000549414 CLSTN1O94985 981 aa19.64■□□□□ 0.73
CUX1-213ENST00000549414 FLIIQ13045 1269 aa19.64■□□□□ 0.73
CUX1-213ENST00000549414 EIF4A2Q14240 407 aaKnown RBP19.63■□□□□ 0.73
CUX1-213ENST00000549414 KCNH5Q8NCM2 988 aa19.63■□□□□ 0.73
CUX1-213ENST00000549414 FBXW7Q969H0 707 aa19.63■□□□□ 0.73
CUX1-213ENST00000549414 CCDC85AQ96PX6 553 aaPredicted RBP19.63■□□□□ 0.73
CUX1-213ENST00000549414 KDM4AO75164 1064 aa19.63■□□□□ 0.73
CUX1-213ENST00000549414 LRRFIP1Q32MZ4 808 aaKnown RBP19.63■□□□□ 0.73
CUX1-213ENST00000549414 PTCD1O75127 700 aaKnown RBP19.63■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms