RNA–Protein interactions for RNA: ENST00000549328.1

CHMP1A-207, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 3

Gene CHMP1A, Length 1,003 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-207ENST00000549328 A0A1W2PP64 1363 aa26.2■■□□□ 1.79
CHMP1A-207ENST00000549328 BAG6P46379 1132 aa26.2■■□□□ 1.78
CHMP1A-207ENST00000549328 PDE3BQ13370 1112 aa26.2■■□□□ 1.78
CHMP1A-207ENST00000549328 NFAT5O94916 1531 aa26.19■■□□□ 1.78
CHMP1A-207ENST00000549328 SOX12O15370 315 aa26.19■■□□□ 1.78
CHMP1A-207ENST00000549328 NME9Q86XW9 330 aa26.19■■□□□ 1.78
CHMP1A-207ENST00000549328 USP54Q70EL1 1684 aa26.19■■□□□ 1.78
CHMP1A-207ENST00000549328 WDR17Q8IZU2 1322 aa26.18■■□□□ 1.78
CHMP1A-207ENST00000549328 TMF1P82094 1093 aa26.18■■□□□ 1.78
CHMP1A-207ENST00000549328 TOM1L2Q6ZVM7 507 aa26.17■■□□□ 1.78
CHMP1A-207ENST00000549328 ABCC6O95255 1503 aa26.15■■□□□ 1.78
CHMP1A-207ENST00000549328 RGPD1P0DJD0 1748 aa26.14■■□□□ 1.78
CHMP1A-207ENST00000549328 PARP4Q9UKK3 1724 aaKnown RBP26.12■■□□□ 1.77
CHMP1A-207ENST00000549328 C11orf95C9JLR9 678 aaPredicted RBP26.12■■□□□ 1.77
CHMP1A-207ENST00000549328 CDCA8Q53HL2 280 aa26.12■■□□□ 1.77
CHMP1A-207ENST00000549328 CARD10Q9BWT7 1032 aa26.12■■□□□ 1.77
CHMP1A-207ENST00000549328 DISP2A7MBM2 1401 aa26.12■■□□□ 1.77
CHMP1A-207ENST00000549328 CDCA7Q9BWT1 371 aaPredicted RBP26.11■■□□□ 1.77
CHMP1A-207ENST00000549328 CSB-PGBD3P0DP91 1061 aa26.1■■□□□ 1.77
CHMP1A-207ENST00000549328 OVOS2A0A0J9YW53 1432 aa26.1■■□□□ 1.77
CHMP1A-207ENST00000549328 OVOS2Q6IE36 1432 aa26.1■■□□□ 1.77
CHMP1A-207ENST00000549328 RGPD5Q99666 1765 aa26.1■■□□□ 1.77
CHMP1A-207ENST00000549328 ANKRD36BQ8N2N9 1353 aa26.09■■□□□ 1.77
CHMP1A-207ENST00000549328 TRIM37O94972 964 aa26.09■■□□□ 1.77
CHMP1A-207ENST00000549328 EN1Q05925 392 aaPredicted RBP26.09■■□□□ 1.77
CHMP1A-207ENST00000549328 DDB1Q16531 1140 aa26.07■■□□□ 1.76
CHMP1A-207ENST00000549328 CCER1Q8TC90 406 aaPredicted RBP26.07■■□□□ 1.76
CHMP1A-207ENST00000549328 TNS1Q9HBL0 1735 aaKnown RBP26.06■■□□□ 1.76
CHMP1A-207ENST00000549328 CCDC7Q96M83 1385 aa26.06■■□□□ 1.76
CHMP1A-207ENST00000549328 COG3Q96JB2 828 aa26.05■■□□□ 1.76
CHMP1A-207ENST00000549328 ERBB3P21860 1342 aa26.04■■□□□ 1.76
CHMP1A-207ENST00000549328 APBA3O96018 575 aa26.03■■□□□ 1.76
CHMP1A-207ENST00000549328 LTN1O94822 1766 aa26.02■■□□□ 1.76
CHMP1A-207ENST00000549328 CAMKK2Q96RR4 588 aa26.02■■□□□ 1.76
CHMP1A-207ENST00000549328 OVOS2A0A0G2JMS6 1433 aa26.02■■□□□ 1.76
CHMP1A-207ENST00000549328 LRRC37A3O60309 1634 aa26.01■■□□□ 1.75
CHMP1A-207ENST00000549328 PARD3Q8TEW0 1356 aa26.01■■□□□ 1.75
CHMP1A-207ENST00000549328 SRCAPQ6ZRS2 3230 aa26■■□□□ 1.75
CHMP1A-207ENST00000549328 IP6K1Q92551 441 aa26■■□□□ 1.75
CHMP1A-207ENST00000549328 WNK3Q9BYP7 1800 aa26■■□□□ 1.75
CHMP1A-207ENST00000549328 EZH2Q15910 746 aaKnown RBP25.99■■□□□ 1.75
CHMP1A-207ENST00000549328 NLRP2Q9NX02 1062 aa25.99■■□□□ 1.75
CHMP1A-207ENST00000549328 PEAK1Q9H792 1746 aa25.98■■□□□ 1.75
CHMP1A-207ENST00000549328 EXOC5O00471 708 aa25.98■■□□□ 1.75
CHMP1A-207ENST00000549328 FYB1O15117 783 aa25.98■■□□□ 1.75
CHMP1A-207ENST00000549328 ANKRD24Q8TF21 1146 aa25.98■■□□□ 1.75
CHMP1A-207ENST00000549328 MARCH10Q8NA82 808 aaPredicted RBP25.97■■□□□ 1.75
CHMP1A-207ENST00000549328 BCL9O00512 1426 aa25.97■■□□□ 1.75
CHMP1A-207ENST00000549328 MAP3K19Q56UN5 1328 aa25.94■■□□□ 1.74
CHMP1A-207ENST00000549328 GGNBP2Q9H3C7 697 aa25.93■■□□□ 1.74
CHMP1A-207ENST00000549328 IL2RBP14784 551 aa25.92■■□□□ 1.74
CHMP1A-207ENST00000549328 AMPHP49418 695 aa25.92■■□□□ 1.74
CHMP1A-207ENST00000549328 EIF4G2P78344 907 aaKnown RBP eCLIP25.92■■□□□ 1.74
CHMP1A-207ENST00000549328 BCL11BQ9C0K0 894 aaPredicted RBP25.92■■□□□ 1.74
CHMP1A-207ENST00000549328 HOXC9P31274 260 aa25.91■■□□□ 1.74
CHMP1A-207ENST00000549328 CARD14Q9BXL6 1004 aa25.91■■□□□ 1.74
CHMP1A-207ENST00000549328 SBF2Q86WG5 1849 aa25.91■■□□□ 1.74
CHMP1A-207ENST00000549328 TNS2Q63HR2 1409 aa25.9■■□□□ 1.74
CHMP1A-207ENST00000549328 PSDA5PKW4 1024 aaPredicted RBP25.9■■□□□ 1.74
CHMP1A-207ENST00000549328 PLSCR1O15162 318 aa25.9■■□□□ 1.74
CHMP1A-207ENST00000549328 FBLN1P23142 703 aa25.9■■□□□ 1.74
CHMP1A-207ENST00000549328 MYOM1P52179 1685 aa25.89■■□□□ 1.73
CHMP1A-207ENST00000549328 RTL1A6NKG5 1358 aa25.88■■□□□ 1.73
CHMP1A-207ENST00000549328 R3HDM1Q15032 1099 aaKnown RBP25.87■■□□□ 1.73
CHMP1A-207ENST00000549328 FAM208AQ9UK61 1670 aaKnown RBP25.87■■□□□ 1.73
CHMP1A-207ENST00000549328 LTV1Q96GA3 475 aaPredicted RBP25.86■■□□□ 1.73
CHMP1A-207ENST00000549328 RREB1Q92766 1687 aa25.86■■□□□ 1.73
CHMP1A-207ENST00000549328 HSPA5P11021 654 aaKnown RBP25.85■■□□□ 1.73
CHMP1A-207ENST00000549328 RRS1Q15050 365 aaKnown RBP25.85■■□□□ 1.73
CHMP1A-207ENST00000549328 NSD3Q9BZ95 1437 aa25.85■■□□□ 1.73
CHMP1A-207ENST00000549328 NBPF14Q5TI25 921 aa25.84■■□□□ 1.73
CHMP1A-207ENST00000549328 KIF20BQ96Q89 1820 aa25.84■■□□□ 1.73
CHMP1A-207ENST00000549328 PTF1AQ7RTS3 328 aa25.83■■□□□ 1.73
CHMP1A-207ENST00000549328 KIF24Q5T7B8 1368 aa25.82■■□□□ 1.72
CHMP1A-207ENST00000549328 RGPD3A6NKT7 1758 aaPredicted RBP25.82■■□□□ 1.72
CHMP1A-207ENST00000549328 RGPD4Q7Z3J3 1758 aa25.82■■□□□ 1.72
CHMP1A-207ENST00000549328 NUP188Q5SRE5 1749 aa25.8■■□□□ 1.72
CHMP1A-207ENST00000549328 CGNL1Q0VF96 1302 aa25.8■■□□□ 1.72
CHMP1A-207ENST00000549328 LRP5O75197 1615 aa25.8■■□□□ 1.72
CHMP1A-207ENST00000549328 POLR3GLQ9BT43 218 aa25.78■■□□□ 1.72
CHMP1A-207ENST00000549328 INSRP06213 1382 aa25.78■■□□□ 1.72
CHMP1A-207ENST00000549328 FLT4P35916 1363 aa25.78■■□□□ 1.72
CHMP1A-207ENST00000549328 SMG6Q86US8 1419 aaKnown RBP25.77■■□□□ 1.72
CHMP1A-207ENST00000549328 KCNQ2O43526 872 aa25.76■■□□□ 1.71
CHMP1A-207ENST00000549328 HSP90AB2PQ58FF8 381 aa25.76■■□□□ 1.71
CHMP1A-207ENST00000549328 NBPF6Q5VWK0 638 aa25.75■■□□□ 1.71
CHMP1A-207ENST00000549328 PROM2Q8N271 834 aa25.75■■□□□ 1.71
CHMP1A-207ENST00000549328 NBPF4Q96M43 638 aa25.75■■□□□ 1.71
CHMP1A-207ENST00000549328 NHSQ6T4R5 1651 aa25.74■■□□□ 1.71
CHMP1A-207ENST00000549328 DDX54Q8TDD1 881 aaKnown RBP25.73■■□□□ 1.71
CHMP1A-207ENST00000549328 ACSBG1Q96GR2 724 aa25.73■■□□□ 1.71
CHMP1A-207ENST00000549328 RGPD2P0DJD1 1756 aa25.72■■□□□ 1.71
CHMP1A-207ENST00000549328 TXNRD1Q16881 649 aa25.72■■□□□ 1.71
CHMP1A-207ENST00000549328 ZCRB1Q8TBF4 217 aaKnown RBP25.72■■□□□ 1.71
CHMP1A-207ENST00000549328 EMILIN1Q9Y6C2 1016 aa25.71■■□□□ 1.71
CHMP1A-207ENST00000549328 PANK3Q9H999 370 aa25.7■■□□□ 1.7
CHMP1A-207ENST00000549328 RAPGEF4Q8WZA2 1011 aa25.69■■□□□ 1.7
CHMP1A-207ENST00000549328 MEGF6O75095 1541 aa25.68■■□□□ 1.7
CHMP1A-207ENST00000549328 WASHC2AQ641Q2 1341 aa25.67■■□□□ 1.7
CHMP1A-207ENST00000549328 KAT6BQ8WYB5 2073 aa25.67■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms