RNA–Protein interactions for RNA: ENST00000549162.5

SCAF11-212, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 1 (best) BASIC

Gene SCAF11, Length 3,934 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-212ENST00000549162 HNRNPUL2Q1KMD3 747 aaKnown RBP6.95□□□□□ -1.3
SCAF11-212ENST00000549162 CGNL1Q0VF96 1302 aa6.94□□□□□ -1.3
SCAF11-212ENST00000549162 DOT1LQ8TEK3 1739 aa6.94□□□□□ -1.3
SCAF11-212ENST00000549162 IL16Q14005 1332 aa6.94□□□□□ -1.3
SCAF11-212ENST00000549162 CENPJQ9HC77 1338 aaPredicted RBP6.94□□□□□ -1.3
SCAF11-212ENST00000549162 ZNF316A6NFI3 1004 aaPredicted RBP6.94□□□□□ -1.3
SCAF11-212ENST00000549162 ZNF692Q9BU19 519 aaPredicted RBP6.94□□□□□ -1.3
SCAF11-212ENST00000549162 U3KPZ7 1027 aaPredicted RBP6.93□□□□□ -1.3
SCAF11-212ENST00000549162 CEMIPQ8WUJ3 1361 aa6.93□□□□□ -1.3
SCAF11-212ENST00000549162 EIF4G2P78344 907 aaKnown RBP eCLIP6.93□□□□□ -1.3
SCAF11-212ENST00000549162 KCPQ6ZWJ8 1503 aa6.93□□□□□ -1.3
SCAF11-212ENST00000549162 ERICH6BQ5W0A0 696 aa6.92□□□□□ -1.3
SCAF11-212ENST00000549162 A0A1W2PP64 1363 aa6.92□□□□□ -1.3
SCAF11-212ENST00000549162 MAST2Q6P0Q8 1798 aa6.92□□□□□ -1.3
SCAF11-212ENST00000549162 ATP10DQ9P241 1426 aa6.91□□□□□ -1.3
SCAF11-212ENST00000549162 EVC2Q86UK5 1308 aa6.91□□□□□ -1.3
SCAF11-212ENST00000549162 TNRC6CQ9HCJ0 1690 aaKnown RBP6.91□□□□□ -1.3
SCAF11-212ENST00000549162 BRWD3Q6RI45 1802 aa6.91□□□□□ -1.3
SCAF11-212ENST00000549162 BRCA1P38398 1863 aaKnown RBP6.91□□□□□ -1.3
SCAF11-212ENST00000549162 UBR3Q6ZT12 1888 aa6.9□□□□□ -1.3
SCAF11-212ENST00000549162 HS6ST3Q8IZP7 471 aa6.9□□□□□ -1.3
SCAF11-212ENST00000549162 NKX1-1Q15270 411 aaPredicted RBP6.9□□□□□ -1.31
SCAF11-212ENST00000549162 ATRNO75882 1429 aa6.89□□□□□ -1.31
SCAF11-212ENST00000549162 DOCK2Q92608 1830 aa6.89□□□□□ -1.31
SCAF11-212ENST00000549162 KCNH8Q96L42 1107 aa6.89□□□□□ -1.31
SCAF11-212ENST00000549162 TTC21BQ7Z4L5 1316 aa6.89□□□□□ -1.31
SCAF11-212ENST00000549162 LTKP29376 864 aa6.89□□□□□ -1.31
SCAF11-212ENST00000549162 GRWD1Q9BQ67 446 aaKnown RBP eCLIP6.89□□□□□ -1.312e-9■■■■■ 30.3
SCAF11-212ENST00000549162 HTATSF1O43719 755 aaKnown RBP6.88□□□□□ -1.31
SCAF11-212ENST00000549162 CT47B1P0C2W7 299 aaPredicted RBP6.88□□□□□ -1.31
SCAF11-212ENST00000549162 MYBBP1AQ9BQG0 1328 aaKnown RBP6.88□□□□□ -1.31
SCAF11-212ENST00000549162 WASLO00401 505 aaPredicted RBP6.88□□□□□ -1.31
SCAF11-212ENST00000549162 LMOD2Q6P5Q4 547 aa6.88□□□□□ -1.31
SCAF11-212ENST00000549162 TIAM2Q8IVF5 1701 aa6.87□□□□□ -1.31
SCAF11-212ENST00000549162 MYH3P11055 1940 aa6.87□□□□□ -1.31
SCAF11-212ENST00000549162 TMF1P82094 1093 aa6.87□□□□□ -1.31
SCAF11-212ENST00000549162 AAMPQ13685 434 aa6.87□□□□□ -1.31
SCAF11-212ENST00000549162 ANKLE2Q86XL3 938 aa6.87□□□□□ -1.31
SCAF11-212ENST00000549162 FOCADQ5VW36 1801 aa6.87□□□□□ -1.31
SCAF11-212ENST00000549162 MAP3K19Q56UN5 1328 aa6.86□□□□□ -1.31
SCAF11-212ENST00000549162 HSPA5P11021 654 aaKnown RBP6.86□□□□□ -1.31
SCAF11-212ENST00000549162 DHX30Q7L2E3 1194 aaKnown RBP eCLIP6.86□□□□□ -1.31
SCAF11-212ENST00000549162 BTAF1O14981 1849 aa6.86□□□□□ -1.31
SCAF11-212ENST00000549162 NEUROD2Q15784 382 aa6.85□□□□□ -1.31
SCAF11-212ENST00000549162 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP6.85□□□□□ -1.312e-7■■■■□ 19.9
SCAF11-212ENST00000549162 PLEKHH1Q9ULM0 1364 aa6.85□□□□□ -1.31
SCAF11-212ENST00000549162 PRR36Q9H6K5 1346 aa6.85□□□□□ -1.31
SCAF11-212ENST00000549162 ZNF609O15014 1411 aa6.85□□□□□ -1.31
SCAF11-212ENST00000549162 GTPBP6O43824 516 aaPredicted RBP6.85□□□□□ -1.31
SCAF11-212ENST00000549162 KIAA0232Q92628 1395 aa6.85□□□□□ -1.31
SCAF11-212ENST00000549162 PDE3BQ13370 1112 aa6.84□□□□□ -1.31
SCAF11-212ENST00000549162 PAPPA2Q9BXP8 1791 aa6.84□□□□□ -1.31
SCAF11-212ENST00000549162 C11orf95C9JLR9 678 aaPredicted RBP6.84□□□□□ -1.31
SCAF11-212ENST00000549162 ERBB3P21860 1342 aa6.84□□□□□ -1.32
SCAF11-212ENST00000549162 CIZ1Q9ULV3 898 aaPredicted RBP6.83□□□□□ -1.32
SCAF11-212ENST00000549162 MAP3K5Q99683 1374 aa6.83□□□□□ -1.32
SCAF11-212ENST00000549162 LAMA4Q16363 1823 aa6.83□□□□□ -1.32
SCAF11-212ENST00000549162 TICAM2Q86XR7 235 aa6.83□□□□□ -1.32
SCAF11-212ENST00000549162 ZNF428Q96B54 188 aa6.83□□□□□ -1.32
SCAF11-212ENST00000549162 CRB1P82279 1406 aa6.83□□□□□ -1.32
SCAF11-212ENST00000549162 IGSF1Q8N6C5 1336 aa6.83□□□□□ -1.32
SCAF11-212ENST00000549162 RNF25Q96BH1 459 aaPredicted RBP6.82□□□□□ -1.32
SCAF11-212ENST00000549162 DDX60LQ5H9U9 1706 aaKnown RBP6.82□□□□□ -1.32
SCAF11-212ENST00000549162 BCL9LQ86UU0 1499 aa6.82□□□□□ -1.32
SCAF11-212ENST00000549162 ARID3AQ99856 593 aa6.82□□□□□ -1.32
SCAF11-212ENST00000549162 EID1Q9Y6B2 187 aa6.82□□□□□ -1.32
SCAF11-212ENST00000549162 MSH6P52701 1360 aa6.81□□□□□ -1.32
SCAF11-212ENST00000549162 ARFGEF1Q9Y6D6 1849 aa6.81□□□□□ -1.32
SCAF11-212ENST00000549162 PLEKHF1Q96S99 279 aa6.81□□□□□ -1.32
SCAF11-212ENST00000549162 ECM29Q5VYK3 1845 aa6.81□□□□□ -1.32
SCAF11-212ENST00000549162 LOC285556D6RIA3 1793 aa6.81□□□□□ -1.32
SCAF11-212ENST00000549162 ZBED9Q6R2W3 1325 aa6.81□□□□□ -1.32
SCAF11-212ENST00000549162 FLT4P35916 1363 aa6.81□□□□□ -1.32
SCAF11-212ENST00000549162 PCGF6Q9BYE7 350 aa6.81□□□□□ -1.32
SCAF11-212ENST00000549162 PRKRIP1Q9H875 184 aaPredicted RBP6.8□□□□□ -1.32
SCAF11-212ENST00000549162 AFDNP55196 1824 aaKnown RBP6.8□□□□□ -1.32
SCAF11-212ENST00000549162 ONECUT3O60422 494 aaPredicted RBP6.8□□□□□ -1.32
SCAF11-212ENST00000549162 PLCD3Q8N3E9 789 aa6.8□□□□□ -1.32
SCAF11-212ENST00000549162 IL27Q8NEV9 243 aa6.8□□□□□ -1.32
SCAF11-212ENST00000549162 FBXO31Q5XUX0 539 aaPredicted RBP6.8□□□□□ -1.32
SCAF11-212ENST00000549162 SPATA31A6Q5VVP1 1343 aa6.79□□□□□ -1.32
SCAF11-212ENST00000549162 SIN3AQ96ST3 1273 aa6.79□□□□□ -1.32
SCAF11-212ENST00000549162 RBBP6Q7Z6E9 1792 aaKnown RBP6.79□□□□□ -1.32
SCAF11-212ENST00000549162 SPATA31A3Q5VYP0 1347 aa6.79□□□□□ -1.32
SCAF11-212ENST00000549162 C1orf115Q9H7X2 142 aa6.79□□□□□ -1.32
SCAF11-212ENST00000549162 IGSF3O75054 1194 aa6.78□□□□□ -1.32
SCAF11-212ENST00000549162 ZNF777Q9ULD5 760 aaPredicted RBP6.78□□□□□ -1.32
SCAF11-212ENST00000549162 CARD14Q9BXL6 1004 aa6.78□□□□□ -1.32
SCAF11-212ENST00000549162 ZMYND15Q9H091 742 aa6.78□□□□□ -1.32
SCAF11-212ENST00000549162 C19orf44Q9H6X5 657 aa6.78□□□□□ -1.32
SCAF11-212ENST00000549162 COL4A1P02462 1669 aa6.78□□□□□ -1.32
SCAF11-212ENST00000549162 CHIC2Q9UKJ5 165 aa6.78□□□□□ -1.32
SCAF11-212ENST00000549162 ZNF853P0CG23 659 aa6.77□□□□□ -1.33
SCAF11-212ENST00000549162 KCNV2Q8TDN2 545 aa6.77□□□□□ -1.33
SCAF11-212ENST00000549162 SLC24A3Q9HC58 644 aa6.77□□□□□ -1.33
SCAF11-212ENST00000549162 CCDC61Q9Y6R9 512 aa6.77□□□□□ -1.33
SCAF11-212ENST00000549162 NLRP13Q86W25 1043 aa6.77□□□□□ -1.33
SCAF11-212ENST00000549162 THRAP3Q9Y2W1 955 aaKnown RBP6.77□□□□□ -1.33
SCAF11-212ENST00000549162 NUP98P52948 1817 aa6.77□□□□□ -1.33
SCAF11-212ENST00000549162 DCAF8L1A6NGE4 600 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms