RNA–Protein interactions for RNA: ENST00000545026.1

LEMD3-206, Transcript of LEM domain containing 3, humanhuman

TSL 3

Gene LEMD3, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LEMD3-206ENST00000545026 C1QTNF2Q9BXJ5 285 aa11.55□□□□□ -0.56
LEMD3-206ENST00000545026 PLA2G2CQ5R387 149 aa11.54□□□□□ -0.56
LEMD3-206ENST00000545026 ANKLE1Q8NAG6 615 aa11.54□□□□□ -0.56
LEMD3-206ENST00000545026 NCOA4Q13772 614 aa11.53□□□□□ -0.56
LEMD3-206ENST00000545026 TSGA10IPQ3SY00 556 aa11.53□□□□□ -0.56
LEMD3-206ENST00000545026 CARNS1A5YM72 827 aa11.52□□□□□ -0.57
LEMD3-206ENST00000545026 TMEM88BA6NKF7 163 aa11.52□□□□□ -0.57
LEMD3-206ENST00000545026 LZTS3O60299 673 aaPredicted RBP11.52□□□□□ -0.57
LEMD3-206ENST00000545026 ELOAQ14241 798 aaKnown RBP11.52□□□□□ -0.57
LEMD3-206ENST00000545026 MAP7D1Q3KQU3 841 aa11.52□□□□□ -0.57
LEMD3-206ENST00000545026 TRAF7Q6Q0C0 670 aa11.52□□□□□ -0.57
LEMD3-206ENST00000545026 AEBP1Q8IUX7 1158 aa11.52□□□□□ -0.57
LEMD3-206ENST00000545026 MKRN1Q9UHC7 482 aaKnown RBP11.52□□□□□ -0.57
LEMD3-206ENST00000545026 ZBTB24O43167 697 aaPredicted RBP11.51□□□□□ -0.57
LEMD3-206ENST00000545026 GIGYF1O75420 1035 aaPredicted RBP11.51□□□□□ -0.57
LEMD3-206ENST00000545026 GGCXP38435 758 aa11.51□□□□□ -0.57
LEMD3-206ENST00000545026 TRIM32Q13049 653 aa11.51□□□□□ -0.57
LEMD3-206ENST00000545026 CCDC85AQ96PX6 553 aaPredicted RBP11.51□□□□□ -0.57
LEMD3-206ENST00000545026 TRMT44Q8IYL2 757 aaKnown RBP11.5□□□□□ -0.57
LEMD3-206ENST00000545026 SLC10A4Q96EP9 437 aa11.5□□□□□ -0.57
LEMD3-206ENST00000545026 ZMIZ1Q9ULJ6 1067 aa11.5□□□□□ -0.57
LEMD3-206ENST00000545026 PPP1R18Q6NYC8 613 aa11.49□□□□□ -0.57
LEMD3-206ENST00000545026 FAM196BA6NMK8 535 aa11.48□□□□□ -0.57
LEMD3-206ENST00000545026 ESPNB1AK53 854 aa11.48□□□□□ -0.57
LEMD3-206ENST00000545026 SKOR1P84550 965 aa11.48□□□□□ -0.57
LEMD3-206ENST00000545026 CRTC2Q53ET0 693 aaPredicted RBP11.48□□□□□ -0.57
LEMD3-206ENST00000545026 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.48□□□□□ -0.57
LEMD3-206ENST00000545026 ATP5J2-PTCD1G3V325 749 aa11.47□□□□□ -0.57
LEMD3-206ENST00000545026 WNT7BP56706 349 aa11.47□□□□□ -0.57
LEMD3-206ENST00000545026 EML3Q32P44 896 aa11.47□□□□□ -0.57
LEMD3-206ENST00000545026 USP17L15C9J2P7 530 aa11.46□□□□□ -0.57
LEMD3-206ENST00000545026 USP17L10C9JJH3 530 aa11.46□□□□□ -0.57
LEMD3-206ENST00000545026 USP17L13C9JLJ4 530 aa11.46□□□□□ -0.57
LEMD3-206ENST00000545026 USP17L12C9JPN9 530 aa11.46□□□□□ -0.57
LEMD3-206ENST00000545026 USP17L11C9JVI0 530 aa11.46□□□□□ -0.57
LEMD3-206ENST00000545026 USP17L21D6R901 530 aa11.46□□□□□ -0.57
LEMD3-206ENST00000545026 USP17L18D6R9N7 530 aa11.46□□□□□ -0.57
LEMD3-206ENST00000545026 USP17L22D6RA61 530 aa11.46□□□□□ -0.57
LEMD3-206ENST00000545026 USP17L17D6RBQ6 530 aa11.46□□□□□ -0.57
LEMD3-206ENST00000545026 USP17L19D6RCP7 530 aa11.46□□□□□ -0.57
LEMD3-206ENST00000545026 USP17L20D6RJB6 530 aa11.46□□□□□ -0.57
LEMD3-206ENST00000545026 BRD1O95696 1058 aa11.46□□□□□ -0.57
LEMD3-206ENST00000545026 RASA1P20936 1047 aa11.46□□□□□ -0.57
LEMD3-206ENST00000545026 USP17L24Q0WX57 530 aa11.46□□□□□ -0.57
LEMD3-206ENST00000545026 PTK7Q13308 1070 aa11.46□□□□□ -0.57
LEMD3-206ENST00000545026 NBPF20Q3BBV1 942 aa11.46□□□□□ -0.57
LEMD3-206ENST00000545026 RNF20Q5VTR2 975 aa11.46□□□□□ -0.57
LEMD3-206ENST00000545026 STK32AQ8WU08 396 aa11.46□□□□□ -0.57
LEMD3-206ENST00000545026 CDV3Q9UKY7 258 aaKnown RBP11.46□□□□□ -0.57
LEMD3-206ENST00000545026 NOVA2Q9UNW9 492 aaKnown RBP11.46□□□□□ -0.57
LEMD3-206ENST00000545026 DOLKQ9UPQ8 538 aa11.46□□□□□ -0.57
LEMD3-206ENST00000545026 RPIAP49247 311 aa11.45□□□□□ -0.58
LEMD3-206ENST00000545026 TMEM164Q5U3C3 297 aa11.45□□□□□ -0.58
LEMD3-206ENST00000545026 VARSP26640 1264 aaKnown RBP11.44□□□□□ -0.58
LEMD3-206ENST00000545026 LARP1Q6PKG0 1096 aaKnown RBP11.44□□□□□ -0.58
LEMD3-206ENST00000545026 CDCA7Q9BWT1 371 aaPredicted RBP11.44□□□□□ -0.58
LEMD3-206ENST00000545026 CLDN10P78369 228 aa11.43□□□□□ -0.58
LEMD3-206ENST00000545026 SEPT12Q8IYM1 358 aa11.43□□□□□ -0.58
LEMD3-206ENST00000545026 OGFOD1Q8N543 542 aa11.43□□□□□ -0.58
LEMD3-206ENST00000545026 NOD1Q9Y239 953 aa11.43□□□□□ -0.58
LEMD3-206ENST00000545026 OXLD1Q5BKU9 147 aa11.42□□□□□ -0.58
LEMD3-206ENST00000545026 TRIM50Q86XT4 487 aa11.42□□□□□ -0.58
LEMD3-206ENST00000545026 CCDC125Q86Z20 511 aa11.41□□□□□ -0.58
LEMD3-206ENST00000545026 ANKMY2Q8IV38 441 aa11.41□□□□□ -0.58
LEMD3-206ENST00000545026 KCTD15Q96SI1 283 aaPredicted RBP11.41□□□□□ -0.58
LEMD3-206ENST00000545026 MAP4K5Q9Y4K4 846 aa11.41□□□□□ -0.58
LEMD3-206ENST00000545026 ZBTB7BO15156 539 aaPredicted RBP11.4□□□□□ -0.58
LEMD3-206ENST00000545026 CD2BP2O95400 341 aaKnown RBP11.4□□□□□ -0.58
LEMD3-206ENST00000545026 KCNA1Q09470 495 aa11.4□□□□□ -0.58
LEMD3-206ENST00000545026 EMID1Q96A84 441 aaPredicted RBP11.4□□□□□ -0.58
LEMD3-206ENST00000545026 DNAAF2Q9NVR5 837 aaKnown RBP11.4□□□□□ -0.58
LEMD3-206ENST00000545026 PCDHB11Q9Y5F2 797 aa11.4□□□□□ -0.58
LEMD3-206ENST00000545026 ATP1A2P50993 1020 aa11.39□□□□□ -0.59
LEMD3-206ENST00000545026 FAM69CQ0P6D2 419 aa11.39□□□□□ -0.59
LEMD3-206ENST00000545026 LIAT1Q6ZQX7 453 aa11.39□□□□□ -0.59
LEMD3-206ENST00000545026 FAM200AQ8TCP9 573 aa11.39□□□□□ -0.59
LEMD3-206ENST00000545026 DKK1O94907 266 aa11.38□□□□□ -0.59
LEMD3-206ENST00000545026 DPYDQ12882 1025 aa11.38□□□□□ -0.59
LEMD3-206ENST00000545026 RC3H1Q5TC82 1133 aaKnown RBP11.38□□□□□ -0.59
LEMD3-206ENST00000545026 LARGE2Q8N3Y3 721 aa11.38□□□□□ -0.59
LEMD3-206ENST00000545026 ZNF594Q96JF6 807 aaPredicted RBP11.38□□□□□ -0.59
LEMD3-206ENST00000545026 KIAA1024Q9UPX6 916 aa11.38□□□□□ -0.59
LEMD3-206ENST00000545026 PATL2C9JE40 543 aaKnown RBP11.37□□□□□ -0.59
LEMD3-206ENST00000545026 GTF2IP78347 998 aa11.37□□□□□ -0.59
LEMD3-206ENST00000545026 INTS6LQ5JSJ4 861 aaKnown RBP11.37□□□□□ -0.59
LEMD3-206ENST00000545026 VASH1Q7L8A9 365 aaPredicted RBP11.37□□□□□ -0.59
LEMD3-206ENST00000545026 EHBP1Q8NDI1 1231 aa11.37□□□□□ -0.59
LEMD3-206ENST00000545026 CDK15Q96Q40 435 aa11.37□□□□□ -0.59
LEMD3-206ENST00000545026 PCDHGA11Q9Y5H2 935 aa11.37□□□□□ -0.59
LEMD3-206ENST00000545026 RAB15P59190 212 aa11.36□□□□□ -0.59
LEMD3-206ENST00000545026 USP4Q13107 963 aa11.36□□□□□ -0.59
LEMD3-206ENST00000545026 MMRN1Q13201 1228 aa11.36□□□□□ -0.59
LEMD3-206ENST00000545026 IFFO2Q5TF58 517 aa11.36□□□□□ -0.59
LEMD3-206ENST00000545026 SIX5Q8N196 739 aa11.36□□□□□ -0.59
LEMD3-206ENST00000545026 GZF1Q9H116 711 aaPredicted RBP11.36□□□□□ -0.59
LEMD3-206ENST00000545026 SLAIN2Q9P270 581 aa11.36□□□□□ -0.59
LEMD3-206ENST00000545026 SIRT1Q96EB6 747 aa11.35□□□□□ -0.59
LEMD3-206ENST00000545026 ERVH48-1M5A8F1 160 aa11.34□□□□□ -0.59
LEMD3-206ENST00000545026 MPNDQ8N594 471 aa11.34□□□□□ -0.59
LEMD3-206ENST00000545026 CLP1Q92989 425 aaKnown RBP11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 75.4 ms