RNA–Protein interactions for RNA: ENST00000542002.5

YBX3-212, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-212ENST00000542002 USP35Q9P2H5 1018 aa13.52□□□□□ -0.25
YBX3-212ENST00000542002 OVOS2A0A0J9YW53 1432 aa13.52□□□□□ -0.25
YBX3-212ENST00000542002 OVOS2Q6IE36 1432 aa13.52□□□□□ -0.25
YBX3-212ENST00000542002 NFAT5O94916 1531 aa13.52□□□□□ -0.25
YBX3-212ENST00000542002 LMO7Q8WWI1 1683 aa13.51□□□□□ -0.25
YBX3-212ENST00000542002 PANK3Q9H999 370 aa13.51□□□□□ -0.25
YBX3-212ENST00000542002 COL5A2P05997 1499 aaPredicted RBP13.5□□□□□ -0.25
YBX3-212ENST00000542002 KIF7Q2M1P5 1343 aa13.5□□□□□ -0.25
YBX3-212ENST00000542002 COG3Q96JB2 828 aa13.5□□□□□ -0.25
YBX3-212ENST00000542002 COL18A1P39060 1754 aa13.49□□□□□ -0.25
YBX3-212ENST00000542002 MYOM1P52179 1685 aa13.49□□□□□ -0.25
YBX3-212ENST00000542002 NSD3Q9BZ95 1437 aa13.48□□□□□ -0.25
YBX3-212ENST00000542002 FAM182BQ5T319 152 aa13.48□□□□□ -0.25
YBX3-212ENST00000542002 MAP3K19Q56UN5 1328 aa13.47□□□□□ -0.25
YBX3-212ENST00000542002 RRS1Q15050 365 aaKnown RBP13.47□□□□□ -0.25
YBX3-212ENST00000542002 BARGINQ6ZT62 677 aa13.47□□□□□ -0.25
YBX3-212ENST00000542002 KRT27Q7Z3Y8 459 aa13.47□□□□□ -0.25
YBX3-212ENST00000542002 TCP11L2Q8N4U5 519 aa13.47□□□□□ -0.25
YBX3-212ENST00000542002 WDR17Q8IZU2 1322 aa13.46□□□□□ -0.25
YBX3-212ENST00000542002 TOM1L2Q6ZVM7 507 aa13.46□□□□□ -0.25
YBX3-212ENST00000542002 IP6K1Q92551 441 aa13.46□□□□□ -0.25
YBX3-212ENST00000542002 USP54Q70EL1 1684 aa13.46□□□□□ -0.26
YBX3-212ENST00000542002 EP400Q96L91 3159 aa13.45□□□□□ -0.26
YBX3-212ENST00000542002 WASHC2AQ641Q2 1341 aa13.45□□□□□ -0.26
YBX3-212ENST00000542002 A0A0G2JS52 829 aa13.45□□□□□ -0.26
YBX3-212ENST00000542002 MYT1Q01538 1121 aa13.45□□□□□ -0.26
YBX3-212ENST00000542002 CRB1P82279 1406 aa13.45□□□□□ -0.26
YBX3-212ENST00000542002 HOXC9P31274 260 aa13.44□□□□□ -0.26
YBX3-212ENST00000542002 CACNB1Q02641 598 aaPredicted RBP13.44□□□□□ -0.26
YBX3-212ENST00000542002 ANKRD24Q8TF21 1146 aa13.44□□□□□ -0.26
YBX3-212ENST00000542002 CARD10Q9BWT7 1032 aa13.44□□□□□ -0.26
YBX3-212ENST00000542002 THRAP3Q9Y2W1 955 aaKnown RBP13.44□□□□□ -0.26
YBX3-212ENST00000542002 ERBB3P21860 1342 aa13.43□□□□□ -0.26
YBX3-212ENST00000542002 CGNL1Q0VF96 1302 aa13.43□□□□□ -0.26
YBX3-212ENST00000542002 PER1O15534 1290 aaPredicted RBP13.43□□□□□ -0.26
YBX3-212ENST00000542002 CSB-PGBD3P0DP91 1061 aa13.43□□□□□ -0.26
YBX3-212ENST00000542002 AMPHP49418 695 aa13.42□□□□□ -0.26
YBX3-212ENST00000542002 LTV1Q96GA3 475 aaPredicted RBP13.42□□□□□ -0.26
YBX3-212ENST00000542002 CCDC7Q96M83 1385 aa13.42□□□□□ -0.26
YBX3-212ENST00000542002 HSP90AB2PQ58FF8 381 aa13.41□□□□□ -0.26
YBX3-212ENST00000542002 NLRP2Q9NX02 1062 aa13.41□□□□□ -0.26
YBX3-212ENST00000542002 EMILIN1Q9Y6C2 1016 aa13.41□□□□□ -0.26
YBX3-212ENST00000542002 BRWD3Q6RI45 1802 aa13.41□□□□□ -0.26
YBX3-212ENST00000542002 THSD7AQ9UPZ6 1657 aa13.4□□□□□ -0.26
YBX3-212ENST00000542002 TNNT2P45379 298 aaPredicted RBP13.4□□□□□ -0.26
YBX3-212ENST00000542002 AMER1Q5JTC6 1135 aaPredicted RBP13.4□□□□□ -0.26
YBX3-212ENST00000542002 RGPD5Q99666 1765 aa13.4□□□□□ -0.26
YBX3-212ENST00000542002 POLKQ9UBT6 870 aa13.39□□□□□ -0.27
YBX3-212ENST00000542002 PDE3BQ13370 1112 aa13.38□□□□□ -0.27
YBX3-212ENST00000542002 NBPF6Q5VWK0 638 aa13.38□□□□□ -0.27
YBX3-212ENST00000542002 NBPF4Q96M43 638 aa13.38□□□□□ -0.27
YBX3-212ENST00000542002 KNSTRNQ9Y448 316 aa13.38□□□□□ -0.27
YBX3-212ENST00000542002 ABCC6O95255 1503 aa13.38□□□□□ -0.27
YBX3-212ENST00000542002 DISP2A7MBM2 1401 aa13.38□□□□□ -0.27
YBX3-212ENST00000542002 BLMP54132 1417 aaPredicted RBP13.38□□□□□ -0.27
YBX3-212ENST00000542002 PPM1GO15355 546 aaPredicted RBP13.37□□□□□ -0.27
YBX3-212ENST00000542002 MARCH10Q8NA82 808 aaPredicted RBP13.37□□□□□ -0.27
YBX3-212ENST00000542002 LTN1O94822 1766 aa13.37□□□□□ -0.27
YBX3-212ENST00000542002 DDB1Q16531 1140 aa13.36□□□□□ -0.27
YBX3-212ENST00000542002 DEFB132Q7Z7B7 95 aa13.36□□□□□ -0.27
YBX3-212ENST00000542002 CCDC125Q86Z20 511 aa13.36□□□□□ -0.27
YBX3-212ENST00000542002 INSRP06213 1382 aa13.35□□□□□ -0.27
YBX3-212ENST00000542002 FAM196AQ6ZSG2 479 aa13.35□□□□□ -0.27
YBX3-212ENST00000542002 PTF1AQ7RTS3 328 aa13.35□□□□□ -0.27
YBX3-212ENST00000542002 MORC1Q86VD1 984 aa13.35□□□□□ -0.27
YBX3-212ENST00000542002 USHBP1Q8N6Y0 703 aa13.35□□□□□ -0.27
YBX3-212ENST00000542002 CDCA7Q9BWT1 371 aaPredicted RBP13.35□□□□□ -0.27
YBX3-212ENST00000542002 PEAK1Q9H792 1746 aa13.35□□□□□ -0.27
YBX3-212ENST00000542002 KIF20BQ96Q89 1820 aa13.34□□□□□ -0.27
YBX3-212ENST00000542002 RTL1A6NKG5 1358 aa13.34□□□□□ -0.27
YBX3-212ENST00000542002 EXOC5O00471 708 aa13.34□□□□□ -0.27
YBX3-212ENST00000542002 TRIM37O94972 964 aa13.34□□□□□ -0.27
YBX3-212ENST00000542002 IL2RBP14784 551 aa13.34□□□□□ -0.27
YBX3-212ENST00000542002 FLT4P35916 1363 aa13.33□□□□□ -0.27
YBX3-212ENST00000542002 CC2D1BQ5T0F9 858 aaKnown RBP13.33□□□□□ -0.28
YBX3-212ENST00000542002 KIF24Q5T7B8 1368 aa13.32□□□□□ -0.28
YBX3-212ENST00000542002 CNGB1Q14028 1251 aaPredicted RBP13.32□□□□□ -0.28
YBX3-212ENST00000542002 NSD2O96028 1365 aa13.32□□□□□ -0.28
YBX3-212ENST00000542002 PARP4Q9UKK3 1724 aaKnown RBP13.3□□□□□ -0.28
YBX3-212ENST00000542002 EN1Q05925 392 aaPredicted RBP13.3□□□□□ -0.28
YBX3-212ENST00000542002 EIF4A2Q14240 407 aaKnown RBP13.3□□□□□ -0.28
YBX3-212ENST00000542002 EYA1Q99502 592 aa13.3□□□□□ -0.28
YBX3-212ENST00000542002 LRRC37A3O60309 1634 aa13.29□□□□□ -0.28
YBX3-212ENST00000542002 KCNQ2O43526 872 aa13.28□□□□□ -0.28
YBX3-212ENST00000542002 APBA3O96018 575 aa13.28□□□□□ -0.28
YBX3-212ENST00000542002 SF3B2Q13435 895 aaKnown RBP13.28□□□□□ -0.28
YBX3-212ENST00000542002 DDX54Q8TDD1 881 aaKnown RBP13.28□□□□□ -0.28
YBX3-212ENST00000542002 CAMKK2Q96RR4 588 aa13.28□□□□□ -0.28
YBX3-212ENST00000542002 MEGF6O75095 1541 aa13.28□□□□□ -0.28
YBX3-212ENST00000542002 HOXD11P31277 338 aaPredicted RBP13.27□□□□□ -0.29
YBX3-212ENST00000542002 MTHFSP49914 203 aa13.27□□□□□ -0.29
YBX3-212ENST00000542002 EZH2Q15910 746 aaKnown RBP13.27□□□□□ -0.29
YBX3-212ENST00000542002 ZCRB1Q8TBF4 217 aaKnown RBP13.27□□□□□ -0.29
YBX3-212ENST00000542002 OVOS2A0A0G2JMS6 1433 aa13.27□□□□□ -0.29
YBX3-212ENST00000542002 TNS2Q63HR2 1409 aa13.27□□□□□ -0.29
YBX3-212ENST00000542002 FAM208AQ9UK61 1670 aaKnown RBP13.27□□□□□ -0.29
YBX3-212ENST00000542002 BCL9O00512 1426 aa13.26□□□□□ -0.29
YBX3-212ENST00000542002 RGPD2P0DJD1 1756 aa13.26□□□□□ -0.29
YBX3-212ENST00000542002 SMG6Q86US8 1419 aaKnown RBP13.26□□□□□ -0.29
YBX3-212ENST00000542002 ACSBG1Q96GR2 724 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms