RNA–Protein interactions for RNA: ENST00000540725.5

SNHG1-213, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 1 (best) BASIC

Gene SNHG1, Length 1,374 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-213ENST00000540725 KCNH5Q8NCM2 988 aa20.13■□□□□ 0.81
SNHG1-213ENST00000540725 NFAT5O94916 1531 aa20.13■□□□□ 0.81
SNHG1-213ENST00000540725 TOM1L2Q6ZVM7 507 aa20.12■□□□□ 0.81
SNHG1-213ENST00000540725 CARD11Q9BXL7 1154 aa20.12■□□□□ 0.81
SNHG1-213ENST00000540725 AXIN2Q9Y2T1 843 aa20.12■□□□□ 0.81
SNHG1-213ENST00000540725 SOX12O15370 315 aa20.11■□□□□ 0.81
SNHG1-213ENST00000540725 ARHGEF25Q86VW2 580 aa20.11■□□□□ 0.81
SNHG1-213ENST00000540725 WDR17Q8IZU2 1322 aa20.11■□□□□ 0.81
SNHG1-213ENST00000540725 OVOS2A0A0G2JMS6 1433 aa20.11■□□□□ 0.81
SNHG1-213ENST00000540725 OVOS2A0A0J9YW53 1432 aa20.11■□□□□ 0.81
SNHG1-213ENST00000540725 OVOS2Q6IE36 1432 aa20.11■□□□□ 0.81
SNHG1-213ENST00000540725 USP54Q70EL1 1684 aa20.1■□□□□ 0.81
SNHG1-213ENST00000540725 TONSLQ96HA7 1378 aa20.09■□□□□ 0.81
SNHG1-213ENST00000540725 C11orf95C9JLR9 678 aaPredicted RBP20.09■□□□□ 0.81
SNHG1-213ENST00000540725 DDB1Q16531 1140 aa20.08■□□□□ 0.81
SNHG1-213ENST00000540725 ABCC6O95255 1503 aa20.08■□□□□ 0.8
SNHG1-213ENST00000540725 CD163L1Q9NR16 1453 aa20.08■□□□□ 0.8
SNHG1-213ENST00000540725 RGPD3A6NKT7 1758 aaPredicted RBP20.08■□□□□ 0.8
SNHG1-213ENST00000540725 RGPD4Q7Z3J3 1758 aa20.08■□□□□ 0.8
SNHG1-213ENST00000540725 LTN1O94822 1766 aa20.07■□□□□ 0.8
SNHG1-213ENST00000540725 CSB-PGBD3P0DP91 1061 aa20.06■□□□□ 0.8
SNHG1-213ENST00000540725 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.06■□□□□ 0.8
SNHG1-213ENST00000540725 USP31Q70CQ4 1352 aa20.05■□□□□ 0.8
SNHG1-213ENST00000540725 CDCA7Q9BWT1 371 aaPredicted RBP20.05■□□□□ 0.8
SNHG1-213ENST00000540725 CARD10Q9BWT7 1032 aa20.05■□□□□ 0.8
SNHG1-213ENST00000540725 TMC1Q8TDI8 760 aa20.04■□□□□ 0.8
SNHG1-213ENST00000540725 NBPF14Q5TI25 921 aa20.03■□□□□ 0.8
SNHG1-213ENST00000540725 NME9Q86XW9 330 aa20.03■□□□□ 0.8
SNHG1-213ENST00000540725 HDGFL2Q7Z4V5 671 aaPredicted RBP20.02■□□□□ 0.8
SNHG1-213ENST00000540725 EDC4Q6P2E9 1401 aaKnown RBP20.01■□□□□ 0.79
SNHG1-213ENST00000540725 MARCH10Q8NA82 808 aaPredicted RBP20.01■□□□□ 0.79
SNHG1-213ENST00000540725 SLC12A5Q9H2X9 1139 aa20.01■□□□□ 0.79
SNHG1-213ENST00000540725 CCDC7Q96M83 1385 aa20.01■□□□□ 0.79
SNHG1-213ENST00000540725 BCL9O00512 1426 aa19.99■□□□□ 0.79
SNHG1-213ENST00000540725 A0A1W2PP64 1363 aa19.99■□□□□ 0.79
SNHG1-213ENST00000540725 PLSCR1O15162 318 aa19.98■□□□□ 0.79
SNHG1-213ENST00000540725 PTF1AQ7RTS3 328 aa19.98■□□□□ 0.79
SNHG1-213ENST00000540725 PUS7Q96PZ0 661 aaKnown RBP19.98■□□□□ 0.79
SNHG1-213ENST00000540725 BCL11BQ9C0K0 894 aaPredicted RBP19.98■□□□□ 0.79
SNHG1-213ENST00000540725 TERF2IPQ9NYB0 399 aa19.98■□□□□ 0.79
SNHG1-213ENST00000540725 KAT6BQ8WYB5 2073 aa19.98■□□□□ 0.79
SNHG1-213ENST00000540725 TNS2Q63HR2 1409 aa19.97■□□□□ 0.79
SNHG1-213ENST00000540725 ERBB3P21860 1342 aa19.97■□□□□ 0.79
SNHG1-213ENST00000540725 EXOC5O00471 708 aa19.96■□□□□ 0.79
SNHG1-213ENST00000540725 TESK2Q96S53 571 aa19.95■□□□□ 0.78
SNHG1-213ENST00000540725 NLRP2Q9NX02 1062 aa19.95■□□□□ 0.78
SNHG1-213ENST00000540725 ST20-MTHFSA0A0A6YYL1 179 aa19.94■□□□□ 0.78
SNHG1-213ENST00000540725 NHSQ6T4R5 1651 aa19.93■□□□□ 0.78
SNHG1-213ENST00000540725 NINLQ9Y2I6 1382 aa19.93■□□□□ 0.78
SNHG1-213ENST00000540725 FAM208AQ9UK61 1670 aaKnown RBP19.92■□□□□ 0.78
SNHG1-213ENST00000540725 ANKRD24Q8TF21 1146 aa19.92■□□□□ 0.78
SNHG1-213ENST00000540725 ANO8Q9HCE9 1232 aaPredicted RBP19.92■□□□□ 0.78
SNHG1-213ENST00000540725 CASZ1Q86V15 1759 aa19.92■□□□□ 0.78
SNHG1-213ENST00000540725 TRIM26Q12899 539 aaPredicted RBP19.9■□□□□ 0.78
SNHG1-213ENST00000540725 PROM2Q8N271 834 aa19.9■□□□□ 0.78
SNHG1-213ENST00000540725 SPON1Q9HCB6 807 aa19.9■□□□□ 0.78
SNHG1-213ENST00000540725 SLC24A1O60721 1099 aa19.89■□□□□ 0.77
SNHG1-213ENST00000540725 IL2RBP14784 551 aa19.89■□□□□ 0.77
SNHG1-213ENST00000540725 KCNQ2O43526 872 aa19.88■□□□□ 0.77
SNHG1-213ENST00000540725 BTAF1O14981 1849 aa19.88■□□□□ 0.77
SNHG1-213ENST00000540725 TXNRD1Q16881 649 aa19.86■□□□□ 0.77
SNHG1-213ENST00000540725 IP6K1Q92551 441 aa19.86■□□□□ 0.77
SNHG1-213ENST00000540725 COG3Q96JB2 828 aa19.86■□□□□ 0.77
SNHG1-213ENST00000540725 PPP1R1BQ9UD71 204 aaPredicted RBP19.86■□□□□ 0.77
SNHG1-213ENST00000540725 RGPD2P0DJD1 1756 aa19.86■□□□□ 0.77
SNHG1-213ENST00000540725 ANKRD36BQ8N2N9 1353 aa19.85■□□□□ 0.77
SNHG1-213ENST00000540725 ACSBG1Q96GR2 724 aa19.85■□□□□ 0.77
SNHG1-213ENST00000540725 USP47Q96K76 1375 aa19.85■□□□□ 0.77
SNHG1-213ENST00000540725 LTV1Q96GA3 475 aaPredicted RBP19.83■□□□□ 0.77
SNHG1-213ENST00000540725 MAP3K19Q56UN5 1328 aa19.83■□□□□ 0.76
SNHG1-213ENST00000540725 PDGFDQ9GZP0 370 aaPredicted RBP19.83■□□□□ 0.76
SNHG1-213ENST00000540725 STK32BQ9NY57 414 aa19.83■□□□□ 0.76
SNHG1-213ENST00000540725 TMF1P82094 1093 aa19.82■□□□□ 0.76
SNHG1-213ENST00000540725 KIF20BQ96Q89 1820 aa19.81■□□□□ 0.76
SNHG1-213ENST00000540725 HOXC9P31274 260 aa19.81■□□□□ 0.76
SNHG1-213ENST00000540725 PAPPAQ13219 1627 aa19.8■□□□□ 0.76
SNHG1-213ENST00000540725 FBLN1P23142 703 aa19.8■□□□□ 0.76
SNHG1-213ENST00000540725 AMPHP49418 695 aa19.8■□□□□ 0.76
SNHG1-213ENST00000540725 SLC15A2Q16348 729 aa19.8■□□□□ 0.76
SNHG1-213ENST00000540725 ZBTB7AO95365 584 aa19.79■□□□□ 0.76
SNHG1-213ENST00000540725 SHANK3Q9BYB0 1731 aa19.79■□□□□ 0.76
SNHG1-213ENST00000540725 MYOM1P52179 1685 aa19.78■□□□□ 0.76
SNHG1-213ENST00000540725 RTL1A6NKG5 1358 aa19.78■□□□□ 0.76
SNHG1-213ENST00000540725 DOT1LQ8TEK3 1739 aa19.77■□□□□ 0.76
SNHG1-213ENST00000540725 DDX54Q8TDD1 881 aaKnown RBP19.77■□□□□ 0.76
SNHG1-213ENST00000540725 FYB1O15117 783 aa19.76■□□□□ 0.75
SNHG1-213ENST00000540725 GGNBP2Q9H3C7 697 aa19.76■□□□□ 0.75
SNHG1-213ENST00000540725 RRS1Q15050 365 aaKnown RBP19.75■□□□□ 0.75
SNHG1-213ENST00000540725 ATF5Q9Y2D1 282 aaPredicted RBP19.75■□□□□ 0.75
SNHG1-213ENST00000540725 PTGER2P43116 358 aa19.74■□□□□ 0.75
SNHG1-213ENST00000540725 CDCA8Q53HL2 280 aa19.74■□□□□ 0.75
SNHG1-213ENST00000540725 MEGF6O75095 1541 aa19.74■□□□□ 0.75
SNHG1-213ENST00000540725 QSER1Q2KHR3 1735 aa19.72■□□□□ 0.75
SNHG1-213ENST00000540725 DCAF8L1A6NGE4 600 aa19.71■□□□□ 0.75
SNHG1-213ENST00000540725 MTFR1LQ9H019 292 aa19.71■□□□□ 0.75
SNHG1-213ENST00000540725 LRRC4BQ9NT99 713 aa19.71■□□□□ 0.75
SNHG1-213ENST00000540725 SMG6Q86US8 1419 aaKnown RBP19.71■□□□□ 0.75
SNHG1-213ENST00000540725 LY75O60449 1722 aa19.7■□□□□ 0.74
SNHG1-213ENST00000540725 ZCRB1Q8TBF4 217 aaKnown RBP19.7■□□□□ 0.74
SNHG1-213ENST00000540725 TUBGCP6Q96RT7 1819 aa19.7■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms