RNA–Protein interactions for RNA: ENST00000536483.1

PRKDC-207, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 2

Gene PRKDC, Length 834 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-207ENST00000536483 PIK3C2AO00443 1686 aa17.65■□□□□ 0.42
PRKDC-207ENST00000536483 NUP188Q5SRE5 1749 aa17.65■□□□□ 0.42
PRKDC-207ENST00000536483 SOX12O15370 315 aa17.65■□□□□ 0.42
PRKDC-207ENST00000536483 PUS7Q96PZ0 661 aaKnown RBP17.65■□□□□ 0.42
PRKDC-207ENST00000536483 WDR17Q8IZU2 1322 aa17.65■□□□□ 0.42
PRKDC-207ENST00000536483 ARHGEF25Q86VW2 580 aa17.64■□□□□ 0.41
PRKDC-207ENST00000536483 PCGF6Q9BYE7 350 aa17.64■□□□□ 0.41
PRKDC-207ENST00000536483 COL18A1P39060 1754 aa17.63■□□□□ 0.41
PRKDC-207ENST00000536483 KCNH5Q8NCM2 988 aa17.63■□□□□ 0.41
PRKDC-207ENST00000536483 CPSF1Q10570 1443 aaKnown RBP17.63■□□□□ 0.41
PRKDC-207ENST00000536483 SLC24A1O60721 1099 aa17.62■□□□□ 0.41
PRKDC-207ENST00000536483 PTF1AQ7RTS3 328 aa17.62■□□□□ 0.41
PRKDC-207ENST00000536483 LRRC37A3O60309 1634 aa17.61■□□□□ 0.41
PRKDC-207ENST00000536483 PEAK1Q9H792 1746 aa17.61■□□□□ 0.41
PRKDC-207ENST00000536483 PLSCR1O15162 318 aa17.61■□□□□ 0.41
PRKDC-207ENST00000536483 CSB-PGBD3P0DP91 1061 aa17.61■□□□□ 0.41
PRKDC-207ENST00000536483 MARCH10Q8NA82 808 aaPredicted RBP17.61■□□□□ 0.41
PRKDC-207ENST00000536483 TTC21AQ8NDW8 1320 aa17.61■□□□□ 0.41
PRKDC-207ENST00000536483 CDCA7Q9BWT1 371 aaPredicted RBP17.6■□□□□ 0.41
PRKDC-207ENST00000536483 CARD10Q9BWT7 1032 aa17.6■□□□□ 0.41
PRKDC-207ENST00000536483 BCL11BQ9C0K0 894 aaPredicted RBP17.6■□□□□ 0.41
PRKDC-207ENST00000536483 KTN1Q86UP2 1357 aaKnown RBP17.59■□□□□ 0.41
PRKDC-207ENST00000536483 TESK2Q96S53 571 aa17.59■□□□□ 0.41
PRKDC-207ENST00000536483 SPON1Q9HCB6 807 aa17.59■□□□□ 0.41
PRKDC-207ENST00000536483 KCNQ2O43526 872 aa17.58■□□□□ 0.4
PRKDC-207ENST00000536483 AKAP12Q02952 1782 aa17.58■□□□□ 0.4
PRKDC-207ENST00000536483 SBF2Q86WG5 1849 aa17.57■□□□□ 0.4
PRKDC-207ENST00000536483 ANO8Q9HCE9 1232 aaPredicted RBP17.57■□□□□ 0.4
PRKDC-207ENST00000536483 PPP1R1BQ9UD71 204 aaPredicted RBP17.57■□□□□ 0.4
PRKDC-207ENST00000536483 RGPD5Q99666 1765 aa17.56■□□□□ 0.4
PRKDC-207ENST00000536483 EXOC5O00471 708 aa17.56■□□□□ 0.4
PRKDC-207ENST00000536483 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.56■□□□□ 0.4
PRKDC-207ENST00000536483 PROM2Q8N271 834 aa17.56■□□□□ 0.4
PRKDC-207ENST00000536483 WNK3Q9BYP7 1800 aa17.55■□□□□ 0.4
PRKDC-207ENST00000536483 NFAT5O94916 1531 aa17.55■□□□□ 0.4
PRKDC-207ENST00000536483 BCL9O00512 1426 aa17.55■□□□□ 0.4
PRKDC-207ENST00000536483 ST20-MTHFSA0A0A6YYL1 179 aa17.54■□□□□ 0.4
PRKDC-207ENST00000536483 CCDC7Q96M83 1385 aa17.53■□□□□ 0.4
PRKDC-207ENST00000536483 RGPD3A6NKT7 1758 aaPredicted RBP17.53■□□□□ 0.4
PRKDC-207ENST00000536483 RGPD4Q7Z3J3 1758 aa17.53■□□□□ 0.4
PRKDC-207ENST00000536483 NME9Q86XW9 330 aa17.53■□□□□ 0.4
PRKDC-207ENST00000536483 TMC1Q8TDI8 760 aa17.53■□□□□ 0.4
PRKDC-207ENST00000536483 PDGFDQ9GZP0 370 aaPredicted RBP17.53■□□□□ 0.4
PRKDC-207ENST00000536483 USP31Q70CQ4 1352 aa17.52■□□□□ 0.39
PRKDC-207ENST00000536483 TXNRD1Q16881 649 aa17.51■□□□□ 0.39
PRKDC-207ENST00000536483 CD163L1Q9NR16 1453 aa17.5■□□□□ 0.39
PRKDC-207ENST00000536483 MON2Q7Z3U7 1717 aa17.5■□□□□ 0.39
PRKDC-207ENST00000536483 SLC12A5Q9H2X9 1139 aa17.5■□□□□ 0.39
PRKDC-207ENST00000536483 NLRP2Q9NX02 1062 aa17.5■□□□□ 0.39
PRKDC-207ENST00000536483 NINLQ9Y2I6 1382 aa17.5■□□□□ 0.39
PRKDC-207ENST00000536483 ERBB3P21860 1342 aa17.49■□□□□ 0.39
PRKDC-207ENST00000536483 TNS2Q63HR2 1409 aa17.49■□□□□ 0.39
PRKDC-207ENST00000536483 ABCC6O95255 1503 aa17.49■□□□□ 0.39
PRKDC-207ENST00000536483 ZBTB7AO95365 584 aa17.49■□□□□ 0.39
PRKDC-207ENST00000536483 YY1P25490 414 aa17.49■□□□□ 0.39
PRKDC-207ENST00000536483 HDGFL2Q7Z4V5 671 aaPredicted RBP17.49■□□□□ 0.39
PRKDC-207ENST00000536483 USP47Q96K76 1375 aa17.49■□□□□ 0.39
PRKDC-207ENST00000536483 ACSBG1Q96GR2 724 aa17.48■□□□□ 0.39
PRKDC-207ENST00000536483 STK32BQ9NY57 414 aa17.48■□□□□ 0.39
PRKDC-207ENST00000536483 ANKRD24Q8TF21 1146 aa17.47■□□□□ 0.39
PRKDC-207ENST00000536483 CASZ1Q86V15 1759 aa17.46■□□□□ 0.39
PRKDC-207ENST00000536483 DCAF8L1A6NGE4 600 aa17.46■□□□□ 0.39
PRKDC-207ENST00000536483 IL2RBP14784 551 aa17.46■□□□□ 0.39
PRKDC-207ENST00000536483 SLC15A2Q16348 729 aa17.46■□□□□ 0.39
PRKDC-207ENST00000536483 CCER1Q8TC90 406 aaPredicted RBP17.46■□□□□ 0.39
PRKDC-207ENST00000536483 ATF5Q9Y2D1 282 aaPredicted RBP17.46■□□□□ 0.39
PRKDC-207ENST00000536483 TERF2IPQ9NYB0 399 aa17.45■□□□□ 0.38
PRKDC-207ENST00000536483 A0A1W2PP64 1363 aa17.44■□□□□ 0.38
PRKDC-207ENST00000536483 UTRNP46939 3433 aa17.44■□□□□ 0.38
PRKDC-207ENST00000536483 PTGER2P43116 358 aa17.44■□□□□ 0.38
PRKDC-207ENST00000536483 USP54Q70EL1 1684 aa17.44■□□□□ 0.38
PRKDC-207ENST00000536483 EDC4Q6P2E9 1401 aaKnown RBP17.44■□□□□ 0.38
PRKDC-207ENST00000536483 TMF1P82094 1093 aa17.43■□□□□ 0.38
PRKDC-207ENST00000536483 LTN1O94822 1766 aa17.43■□□□□ 0.38
PRKDC-207ENST00000536483 CDCA8Q53HL2 280 aa17.41■□□□□ 0.38
PRKDC-207ENST00000536483 NHSQ6T4R5 1651 aa17.41■□□□□ 0.38
PRKDC-207ENST00000536483 IP6K1Q92551 441 aa17.4■□□□□ 0.38
PRKDC-207ENST00000536483 LTV1Q96GA3 475 aaPredicted RBP17.4■□□□□ 0.38
PRKDC-207ENST00000536483 MTFR1LQ9H019 292 aa17.39■□□□□ 0.37
PRKDC-207ENST00000536483 MYOM1P52179 1685 aa17.39■□□□□ 0.37
PRKDC-207ENST00000536483 DDX54Q8TDD1 881 aaKnown RBP17.38■□□□□ 0.37
PRKDC-207ENST00000536483 ANKRD36BQ8N2N9 1353 aa17.38■□□□□ 0.37
PRKDC-207ENST00000536483 KAT6BQ8WYB5 2073 aa17.38■□□□□ 0.37
PRKDC-207ENST00000536483 FBLN1P23142 703 aa17.37■□□□□ 0.37
PRKDC-207ENST00000536483 SGIP1Q9BQI5 828 aa17.37■□□□□ 0.37
PRKDC-207ENST00000536483 SYT17Q9BSW7 474 aa17.37■□□□□ 0.37
PRKDC-207ENST00000536483 FHDC1Q9C0D6 1143 aaPredicted RBP17.37■□□□□ 0.37
PRKDC-207ENST00000536483 LRRC4BQ9NT99 713 aa17.37■□□□□ 0.37
PRKDC-207ENST00000536483 ZNF827Q17R98 1081 aa17.36■□□□□ 0.37
PRKDC-207ENST00000536483 COG3Q96JB2 828 aa17.36■□□□□ 0.37
PRKDC-207ENST00000536483 BTAF1O14981 1849 aa17.35■□□□□ 0.37
PRKDC-207ENST00000536483 MAP3K19Q56UN5 1328 aa17.35■□□□□ 0.37
PRKDC-207ENST00000536483 HOXC9P31274 260 aa17.34■□□□□ 0.37
PRKDC-207ENST00000536483 PAPPAQ13219 1627 aa17.34■□□□□ 0.37
PRKDC-207ENST00000536483 AMPHP49418 695 aa17.33■□□□□ 0.36
PRKDC-207ENST00000536483 EIF4G2P78344 907 aaKnown RBP eCLIP17.33■□□□□ 0.36
PRKDC-207ENST00000536483 ARXQ96QS3 562 aa17.33■□□□□ 0.36
PRKDC-207ENST00000536483 SYTL4Q96C24 671 aaPredicted RBP17.32■□□□□ 0.36
PRKDC-207ENST00000536483 PRIM1P49642 420 aaKnown RBP17.31■□□□□ 0.36
PRKDC-207ENST00000536483 SLC27A3Q5K4L6 730 aa17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms