RNA–Protein interactions for RNA: ENST00000534374.1

YIF1A-213, Transcript of Yip1 interacting factor homolog A, membrane trafficking protein, human

TSL 2

Gene YIF1A, Length 540 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YIF1A-213	ENST00000534374	EDC4	Q6P2E9	1401 aa	Known RBP	32.7	■■■□□ 2.83
YIF1A-213	ENST00000534374	NME9	Q86XW9	330 aa		32.7	■■■□□ 2.83
YIF1A-213	ENST00000534374	USP47	Q96K76	1375 aa		32.7	■■■□□ 2.82
YIF1A-213	ENST00000534374	SOX12	O15370	315 aa		32.69	■■■□□ 2.82
YIF1A-213	ENST00000534374	BAG6	P46379	1132 aa		32.69	■■■□□ 2.82
YIF1A-213	ENST00000534374	TMF1	P82094	1093 aa		32.69	■■■□□ 2.82
YIF1A-213	ENST00000534374		A0A1W2PP64	1363 aa		32.69	■■■□□ 2.82
YIF1A-213	ENST00000534374	TOM1L2	Q6ZVM7	507 aa		32.68	■■■□□ 2.82
YIF1A-213	ENST00000534374	WDR17	Q8IZU2	1322 aa		32.67	■■■□□ 2.82
YIF1A-213	ENST00000534374	NFAT5	O94916	1531 aa		32.65	■■■□□ 2.82
YIF1A-213	ENST00000534374	CDCA8	Q53HL2	280 aa		32.62	■■■□□ 2.81
YIF1A-213	ENST00000534374	USP54	Q70EL1	1684 aa		32.62	■■■□□ 2.81
YIF1A-213	ENST00000534374	C11orf95	C9JLR9	678 aa	Predicted RBP	32.61	■■■□□ 2.81
YIF1A-213	ENST00000534374	CDCA7	Q9BWT1	371 aa	Predicted RBP	32.61	■■■□□ 2.81
YIF1A-213	ENST00000534374	CARD10	Q9BWT7	1032 aa		32.61	■■■□□ 2.81
YIF1A-213	ENST00000534374	CSB-PGBD3	P0DP91	1061 aa		32.59	■■■□□ 2.81
YIF1A-213	ENST00000534374	ABCC6	O95255	1503 aa		32.59	■■■□□ 2.81
YIF1A-213	ENST00000534374	RGPD1	P0DJD0	1748 aa		32.58	■■■□□ 2.81
YIF1A-213	ENST00000534374	TRIM37	O94972	964 aa		32.58	■■■□□ 2.81
YIF1A-213	ENST00000534374	EN1	Q05925	392 aa	Predicted RBP	32.57	■■■□□ 2.8
YIF1A-213	ENST00000534374	DISP2	A7MBM2	1401 aa		32.57	■■■□□ 2.8
YIF1A-213	ENST00000534374	RGPD5	Q99666	1765 aa		32.56	■■■□□ 2.8
YIF1A-213	ENST00000534374	PARP4	Q9UKK3	1724 aa	Known RBP	32.56	■■■□□ 2.8
YIF1A-213	ENST00000534374	ANKRD36B	Q8N2N9	1353 aa		32.56	■■■□□ 2.8
YIF1A-213	ENST00000534374	DDB1	Q16531	1140 aa		32.55	■■■□□ 2.8
YIF1A-213	ENST00000534374	OVOS2	A0A0J9YW53	1432 aa		32.54	■■■□□ 2.8
YIF1A-213	ENST00000534374	OVOS2	Q6IE36	1432 aa		32.54	■■■□□ 2.8
YIF1A-213	ENST00000534374	CCER1	Q8TC90	406 aa	Predicted RBP	32.54	■■■□□ 2.8
YIF1A-213	ENST00000534374	COG3	Q96JB2	828 aa		32.52	■■■□□ 2.8
YIF1A-213	ENST00000534374	CCDC7	Q96M83	1385 aa		32.5	■■■□□ 2.79
YIF1A-213	ENST00000534374	APBA3	O96018	575 aa		32.5	■■■□□ 2.79
YIF1A-213	ENST00000534374	ERBB3	P21860	1342 aa		32.5	■■■□□ 2.79
YIF1A-213	ENST00000534374	CAMKK2	Q96RR4	588 aa		32.49	■■■□□ 2.79
YIF1A-213	ENST00000534374	IP6K1	Q92551	441 aa		32.47	■■■□□ 2.79
YIF1A-213	ENST00000534374	TNS1	Q9HBL0	1735 aa	Known RBP	32.47	■■■□□ 2.79
YIF1A-213	ENST00000534374	EZH2	Q15910	746 aa	Known RBP	32.46	■■■□□ 2.79
YIF1A-213	ENST00000534374	EXOC5	O00471	708 aa		32.45	■■■□□ 2.79
YIF1A-213	ENST00000534374	FYB1	O15117	783 aa		32.45	■■■□□ 2.79
YIF1A-213	ENST00000534374	LTN1	O94822	1766 aa		32.45	■■■□□ 2.78
YIF1A-213	ENST00000534374	PARD3	Q8TEW0	1356 aa		32.45	■■■□□ 2.78
YIF1A-213	ENST00000534374	OVOS2	A0A0G2JMS6	1433 aa		32.44	■■■□□ 2.78
YIF1A-213	ENST00000534374	ANKRD24	Q8TF21	1146 aa		32.44	■■■□□ 2.78
YIF1A-213	ENST00000534374	NLRP2	Q9NX02	1062 aa		32.44	■■■□□ 2.78
YIF1A-213	ENST00000534374	MARCH10	Q8NA82	808 aa	Predicted RBP	32.42	■■■□□ 2.78
YIF1A-213	ENST00000534374	LRRC37A3	O60309	1634 aa		32.4	■■■□□ 2.78
YIF1A-213	ENST00000534374	BCL9	O00512	1426 aa		32.4	■■■□□ 2.78
YIF1A-213	ENST00000534374	PEAK1	Q9H792	1746 aa		32.39	■■■□□ 2.78
YIF1A-213	ENST00000534374	WNK3	Q9BYP7	1800 aa		32.39	■■■□□ 2.78
YIF1A-213	ENST00000534374	MAP3K19	Q56UN5	1328 aa		32.38	■■■□□ 2.77
YIF1A-213	ENST00000534374	GGNBP2	Q9H3C7	697 aa		32.37	■■■□□ 2.77
YIF1A-213	ENST00000534374	IL2RB	P14784	551 aa		32.36	■■■□□ 2.77
YIF1A-213	ENST00000534374	AMPH	P49418	695 aa		32.36	■■■□□ 2.77
YIF1A-213	ENST00000534374	EIF4G2	P78344	907 aa	Known RBP eCLIP	32.36	■■■□□ 2.77
YIF1A-213	ENST00000534374	BCL11B	Q9C0K0	894 aa	Predicted RBP	32.36	■■■□□ 2.77
YIF1A-213	ENST00000534374	FBLN1	P23142	703 aa		32.35	■■■□□ 2.77
YIF1A-213	ENST00000534374	CARD14	Q9BXL6	1004 aa		32.35	■■■□□ 2.77
YIF1A-213	ENST00000534374	PSD	A5PKW4	1024 aa	Predicted RBP	32.34	■■■□□ 2.77
YIF1A-213	ENST00000534374	PLSCR1	O15162	318 aa		32.34	■■■□□ 2.77
YIF1A-213	ENST00000534374	HOXC9	P31274	260 aa		32.34	■■■□□ 2.77
YIF1A-213	ENST00000534374	SBF2	Q86WG5	1849 aa		32.32	■■■□□ 2.76
YIF1A-213	ENST00000534374	LRP5	O75197	1615 aa		32.32	■■■□□ 2.76
YIF1A-213	ENST00000534374	LTV1	Q96GA3	475 aa	Predicted RBP	32.3	■■■□□ 2.76
YIF1A-213	ENST00000534374	TNS2	Q63HR2	1409 aa		32.29	■■■□□ 2.76
YIF1A-213	ENST00000534374	R3HDM1	Q15032	1099 aa	Known RBP	32.29	■■■□□ 2.76
YIF1A-213	ENST00000534374	HSPA5	P11021	654 aa	Known RBP	32.28	■■■□□ 2.76
YIF1A-213	ENST00000534374	RRS1	Q15050	365 aa	Known RBP	32.27	■■■□□ 2.76
YIF1A-213	ENST00000534374	NBPF14	Q5TI25	921 aa		32.27	■■■□□ 2.76
YIF1A-213	ENST00000534374	RTL1	A6NKG5	1358 aa		32.27	■■■□□ 2.76
YIF1A-213	ENST00000534374	PTF1A	Q7RTS3	328 aa		32.25	■■■□□ 2.75
YIF1A-213	ENST00000534374	MYOM1	P52179	1685 aa		32.24	■■■□□ 2.75
YIF1A-213	ENST00000534374	NSD3	Q9BZ95	1437 aa		32.24	■■■□□ 2.75
YIF1A-213	ENST00000534374	KIF24	Q5T7B8	1368 aa		32.22	■■■□□ 2.75
YIF1A-213	ENST00000534374	RREB1	Q92766	1687 aa		32.22	■■■□□ 2.75
YIF1A-213	ENST00000534374	FAM208A	Q9UK61	1670 aa	Known RBP	32.22	■■■□□ 2.75
YIF1A-213	ENST00000534374	POLR3GL	Q9BT43	218 aa		32.2	■■■□□ 2.75
YIF1A-213	ENST00000534374	KIF20B	Q96Q89	1820 aa		32.2	■■■□□ 2.75
YIF1A-213	ENST00000534374	CGNL1	Q0VF96	1302 aa		32.2	■■■□□ 2.74
YIF1A-213	ENST00000534374	RGPD3	A6NKT7	1758 aa	Predicted RBP	32.18	■■■□□ 2.74
YIF1A-213	ENST00000534374	RGPD4	Q7Z3J3	1758 aa		32.18	■■■□□ 2.74
YIF1A-213	ENST00000534374	KCNQ2	O43526	872 aa		32.17	■■■□□ 2.74
YIF1A-213	ENST00000534374	PROM2	Q8N271	834 aa		32.17	■■■□□ 2.74
YIF1A-213	ENST00000534374	INSR	P06213	1382 aa		32.17	■■■□□ 2.74
YIF1A-213	ENST00000534374	KAT6B	Q8WYB5	2073 aa		32.17	■■■□□ 2.74
YIF1A-213	ENST00000534374	HSP90AB2P	Q58FF8	381 aa		32.16	■■■□□ 2.74
YIF1A-213	ENST00000534374	NBPF6	Q5VWK0	638 aa		32.16	■■■□□ 2.74
YIF1A-213	ENST00000534374	NBPF4	Q96M43	638 aa		32.16	■■■□□ 2.74
YIF1A-213	ENST00000534374	NUP188	Q5SRE5	1749 aa		32.16	■■■□□ 2.74
YIF1A-213	ENST00000534374	FLT4	P35916	1363 aa		32.15	■■■□□ 2.74
YIF1A-213	ENST00000534374	SMG6	Q86US8	1419 aa	Known RBP	32.13	■■■□□ 2.73
YIF1A-213	ENST00000534374	DDX54	Q8TDD1	881 aa	Known RBP	32.13	■■■□□ 2.73
YIF1A-213	ENST00000534374	ACSBG1	Q96GR2	724 aa		32.13	■■■□□ 2.73
YIF1A-213	ENST00000534374	ZCRB1	Q8TBF4	217 aa	Known RBP	32.11	■■■□□ 2.73
YIF1A-213	ENST00000534374	TXNRD1	Q16881	649 aa		32.1	■■■□□ 2.73
YIF1A-213	ENST00000534374	PANK3	Q9H999	370 aa		32.1	■■■□□ 2.73
YIF1A-213	ENST00000534374	RGPD2	P0DJD1	1756 aa		32.09	■■■□□ 2.73
YIF1A-213	ENST00000534374	EMILIN1	Q9Y6C2	1016 aa		32.09	■■■□□ 2.73
YIF1A-213	ENST00000534374	RAPGEF4	Q8WZA2	1011 aa		32.07	■■■□□ 2.72
YIF1A-213	ENST00000534374	WASHC2A	Q641Q2	1341 aa		32.06	■■■□□ 2.72
YIF1A-213	ENST00000534374	NHS	Q6T4R5	1651 aa		32.06	■■■□□ 2.72
YIF1A-213	ENST00000534374	USHBP1	Q8N6Y0	703 aa		32.04	■■■□□ 2.72

Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms