RNA–Protein interactions for RNA: ENST00000531042.5

CPSF1-205, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-205ENST00000531042 TOM1L2Q6ZVM7 507 aa22.38■■□□□ 1.17
CPSF1-205ENST00000531042 WDR17Q8IZU2 1322 aa22.37■■□□□ 1.17
CPSF1-205ENST00000531042 LRP5O75197 1615 aa22.36■■□□□ 1.17
CPSF1-205ENST00000531042 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.36■■□□□ 1.17
CPSF1-205ENST00000531042 TMC1Q8TDI8 760 aa22.36■■□□□ 1.17
CPSF1-205ENST00000531042 SLC12A5Q9H2X9 1139 aa22.35■■□□□ 1.17
CPSF1-205ENST00000531042 WNK3Q9BYP7 1800 aa22.35■■□□□ 1.17
CPSF1-205ENST00000531042 USP54Q70EL1 1684 aa22.35■■□□□ 1.17
CPSF1-205ENST00000531042 USP31Q70CQ4 1352 aa22.35■■□□□ 1.17
CPSF1-205ENST00000531042 PARD3Q8TEW0 1356 aa22.35■■□□□ 1.17
CPSF1-205ENST00000531042 LRRC37A3O60309 1634 aa22.35■■□□□ 1.17
CPSF1-205ENST00000531042 C11orf95C9JLR9 678 aaPredicted RBP22.34■■□□□ 1.17
CPSF1-205ENST00000531042 PUS7Q96PZ0 661 aaKnown RBP22.34■■□□□ 1.17
CPSF1-205ENST00000531042 PEAK1Q9H792 1746 aa22.34■■□□□ 1.17
CPSF1-205ENST00000531042 DDB1Q16531 1140 aa22.33■■□□□ 1.17
CPSF1-205ENST00000531042 HDGFL2Q7Z4V5 671 aaPredicted RBP22.33■■□□□ 1.17
CPSF1-205ENST00000531042 R3HDM1Q15032 1099 aaKnown RBP22.32■■□□□ 1.16
CPSF1-205ENST00000531042 NME9Q86XW9 330 aa22.32■■□□□ 1.16
CPSF1-205ENST00000531042 RREB1Q92766 1687 aa22.32■■□□□ 1.16
CPSF1-205ENST00000531042 OVOS2A0A0G2JMS6 1433 aa22.31■■□□□ 1.16
CPSF1-205ENST00000531042 OVOS2A0A0J9YW53 1432 aa22.31■■□□□ 1.16
CPSF1-205ENST00000531042 OVOS2Q6IE36 1432 aa22.31■■□□□ 1.16
CPSF1-205ENST00000531042 ABCC6O95255 1503 aa22.31■■□□□ 1.16
CPSF1-205ENST00000531042 CARD10Q9BWT7 1032 aa22.31■■□□□ 1.16
CPSF1-205ENST00000531042 EDC4Q6P2E9 1401 aaKnown RBP22.31■■□□□ 1.16
CPSF1-205ENST00000531042 CSB-PGBD3P0DP91 1061 aa22.3■■□□□ 1.16
CPSF1-205ENST00000531042 TESK2Q96S53 571 aa22.3■■□□□ 1.16
CPSF1-205ENST00000531042 CDCA7Q9BWT1 371 aaPredicted RBP22.3■■□□□ 1.16
CPSF1-205ENST00000531042 TERF2IPQ9NYB0 399 aa22.3■■□□□ 1.16
CPSF1-205ENST00000531042 SBF2Q86WG5 1849 aa22.29■■□□□ 1.16
CPSF1-205ENST00000531042 A0A1W2PP64 1363 aa22.29■■□□□ 1.16
CPSF1-205ENST00000531042 ST20-MTHFSA0A0A6YYL1 179 aa22.29■■□□□ 1.16
CPSF1-205ENST00000531042 NUP188Q5SRE5 1749 aa22.28■■□□□ 1.16
CPSF1-205ENST00000531042 LTN1O94822 1766 aa22.27■■□□□ 1.16
CPSF1-205ENST00000531042 CCDC7Q96M83 1385 aa22.25■■□□□ 1.15
CPSF1-205ENST00000531042 SLC24A1O60721 1099 aa22.25■■□□□ 1.15
CPSF1-205ENST00000531042 MARCH10Q8NA82 808 aaPredicted RBP22.25■■□□□ 1.15
CPSF1-205ENST00000531042 NINLQ9Y2I6 1382 aa22.25■■□□□ 1.15
CPSF1-205ENST00000531042 ERBB3P21860 1342 aa22.23■■□□□ 1.15
CPSF1-205ENST00000531042 BCL9O00512 1426 aa22.23■■□□□ 1.15
CPSF1-205ENST00000531042 RGPD3A6NKT7 1758 aaPredicted RBP22.22■■□□□ 1.15
CPSF1-205ENST00000531042 RGPD4Q7Z3J3 1758 aa22.22■■□□□ 1.15
CPSF1-205ENST00000531042 EXOC5O00471 708 aa22.22■■□□□ 1.15
CPSF1-205ENST00000531042 NBPF14Q5TI25 921 aa22.22■■□□□ 1.15
CPSF1-205ENST00000531042 PLSCR1O15162 318 aa22.21■■□□□ 1.15
CPSF1-205ENST00000531042 BCL11BQ9C0K0 894 aaPredicted RBP22.21■■□□□ 1.15
CPSF1-205ENST00000531042 PTF1AQ7RTS3 328 aa22.2■■□□□ 1.14
CPSF1-205ENST00000531042 NLRP2Q9NX02 1062 aa22.19■■□□□ 1.14
CPSF1-205ENST00000531042 TNS2Q63HR2 1409 aa22.18■■□□□ 1.14
CPSF1-205ENST00000531042 ANKRD24Q8TF21 1146 aa22.18■■□□□ 1.14
CPSF1-205ENST00000531042 USP47Q96K76 1375 aa22.17■■□□□ 1.14
CPSF1-205ENST00000531042 ANKRD36BQ8N2N9 1353 aa22.15■■□□□ 1.14
CPSF1-205ENST00000531042 TMF1P82094 1093 aa22.15■■□□□ 1.14
CPSF1-205ENST00000531042 IP6K1Q92551 441 aa22.15■■□□□ 1.14
CPSF1-205ENST00000531042 COG3Q96JB2 828 aa22.15■■□□□ 1.14
CPSF1-205ENST00000531042 IL2RBP14784 551 aa22.14■■□□□ 1.13
CPSF1-205ENST00000531042 PROM2Q8N271 834 aa22.12■■□□□ 1.13
CPSF1-205ENST00000531042 FAM208AQ9UK61 1670 aaKnown RBP22.11■■□□□ 1.13
CPSF1-205ENST00000531042 NHSQ6T4R5 1651 aa22.11■■□□□ 1.13
CPSF1-205ENST00000531042 KCNQ2O43526 872 aa22.1■■□□□ 1.13
CPSF1-205ENST00000531042 TIMELESSQ9UNS1 1208 aa22.1■■□□□ 1.13
CPSF1-205ENST00000531042 MAP3K19Q56UN5 1328 aa22.09■■□□□ 1.13
CPSF1-205ENST00000531042 FBLN1P23142 703 aa22.09■■□□□ 1.13
CPSF1-205ENST00000531042 ANO8Q9HCE9 1232 aaPredicted RBP22.09■■□□□ 1.13
CPSF1-205ENST00000531042 HOXC9P31274 260 aa22.08■■□□□ 1.13
CPSF1-205ENST00000531042 LTV1Q96GA3 475 aaPredicted RBP22.08■■□□□ 1.13
CPSF1-205ENST00000531042 FYB1O15117 783 aa22.07■■□□□ 1.12
CPSF1-205ENST00000531042 CDCA8Q53HL2 280 aa22.07■■□□□ 1.12
CPSF1-205ENST00000531042 CLSPNQ9HAW4 1339 aa22.06■■□□□ 1.12
CPSF1-205ENST00000531042 AMPHP49418 695 aa22.06■■□□□ 1.12
CPSF1-205ENST00000531042 TXNRD1Q16881 649 aa22.06■■□□□ 1.12
CPSF1-205ENST00000531042 ACSBG1Q96GR2 724 aa22.06■■□□□ 1.12
CPSF1-205ENST00000531042 GGNBP2Q9H3C7 697 aa22.05■■□□□ 1.12
CPSF1-205ENST00000531042 SPON1Q9HCB6 807 aa22.05■■□□□ 1.12
CPSF1-205ENST00000531042 PCGF6Q9BYE7 350 aa22.04■■□□□ 1.12
CPSF1-205ENST00000531042 RGPD2P0DJD1 1756 aa22.04■■□□□ 1.12
CPSF1-205ENST00000531042 CASZ1Q86V15 1759 aa22.04■■□□□ 1.12
CPSF1-205ENST00000531042 RTL1A6NKG5 1358 aa22.02■■□□□ 1.12
CPSF1-205ENST00000531042 BTAF1O14981 1849 aa22.02■■□□□ 1.12
CPSF1-205ENST00000531042 KIF20BQ96Q89 1820 aa22.02■■□□□ 1.12
CPSF1-205ENST00000531042 RRS1Q15050 365 aaKnown RBP22.02■■□□□ 1.12
CPSF1-205ENST00000531042 MYOM1P52179 1685 aa22.01■■□□□ 1.11
CPSF1-205ENST00000531042 DDX54Q8TDD1 881 aaKnown RBP22■■□□□ 1.11
CPSF1-205ENST00000531042 PDGFDQ9GZP0 370 aaPredicted RBP22■■□□□ 1.11
CPSF1-205ENST00000531042 STK32BQ9NY57 414 aa22■■□□□ 1.11
CPSF1-205ENST00000531042 KAT6BQ8WYB5 2073 aa22■■□□□ 1.11
CPSF1-205ENST00000531042 SLC15A2Q16348 729 aa21.99■■□□□ 1.11
CPSF1-205ENST00000531042 CARD14Q9BXL6 1004 aa21.98■■□□□ 1.11
CPSF1-205ENST00000531042 PPP1R1BQ9UD71 204 aaPredicted RBP21.98■■□□□ 1.11
CPSF1-205ENST00000531042 NBPF6Q5VWK0 638 aa21.96■■□□□ 1.11
CPSF1-205ENST00000531042 NBPF4Q96M43 638 aa21.96■■□□□ 1.11
CPSF1-205ENST00000531042 SHANK3Q9BYB0 1731 aa21.96■■□□□ 1.11
CPSF1-205ENST00000531042 MEGF6O75095 1541 aa21.96■■□□□ 1.11
CPSF1-205ENST00000531042 ZCRB1Q8TBF4 217 aaKnown RBP21.95■■□□□ 1.1
CPSF1-205ENST00000531042 NSD3Q9BZ95 1437 aa21.95■■□□□ 1.1
CPSF1-205ENST00000531042 PAPPAQ13219 1627 aa21.95■■□□□ 1.1
CPSF1-205ENST00000531042 ZBTB7AO95365 584 aa21.94■■□□□ 1.1
CPSF1-205ENST00000531042 SMG6Q86US8 1419 aaKnown RBP21.94■■□□□ 1.1
CPSF1-205ENST00000531042 INSRP06213 1382 aa21.93■■□□□ 1.1
CPSF1-205ENST00000531042 HSP90AB2PQ58FF8 381 aa21.93■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 74.7 ms