RNA–Protein interactions for RNA: ENST00000530660.5

PCF11-204, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 2

Gene PCF11, Length 3,309 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-204ENST00000530660 SMC4Q9NTJ3 1288 aa17.2■□□□□ 0.34
PCF11-204ENST00000530660 SAMD9LQ8IVG5 1584 aa17.2■□□□□ 0.34
PCF11-204ENST00000530660 IQGAP1P46940 1657 aa17.2■□□□□ 0.34
PCF11-204ENST00000530660 FBLN2P98095 1184 aa17.19■□□□□ 0.34
PCF11-204ENST00000530660 UNC13BO14795 1591 aa17.19■□□□□ 0.34
PCF11-204ENST00000530660 TULP2O00295 520 aa17.19■□□□□ 0.34
PCF11-204ENST00000530660 DDX19BQ9UMR2 479 aa17.19■□□□□ 0.34
PCF11-204ENST00000530660 SCAF11Q99590 1463 aaKnown RBP17.18■□□□□ 0.34
PCF11-204ENST00000530660 KIAA1524Q8TCG1 905 aa17.18■□□□□ 0.34
PCF11-204ENST00000530660 MBD3O95983 291 aa17.18■□□□□ 0.34
PCF11-204ENST00000530660 TMEM57Q8N5G2 664 aa17.18■□□□□ 0.34
PCF11-204ENST00000530660 TSR2Q969E8 191 aaKnown RBP17.18■□□□□ 0.34
PCF11-204ENST00000530660 ABCA8O94911 1581 aa17.18■□□□□ 0.34
PCF11-204ENST00000530660 RABEP1Q15276 862 aa17.18■□□□□ 0.34
PCF11-204ENST00000530660 KCNF1Q9H3M0 494 aa17.18■□□□□ 0.34
PCF11-204ENST00000530660 VGFO15240 615 aaPredicted RBP17.17■□□□□ 0.34
PCF11-204ENST00000530660 JPH4Q96JJ6 628 aa17.17■□□□□ 0.34
PCF11-204ENST00000530660 GDPD2Q9HCC8 539 aa17.17■□□□□ 0.34
PCF11-204ENST00000530660 CHRM1P11229 460 aaPredicted RBP17.16■□□□□ 0.34
PCF11-204ENST00000530660 RUNDC1Q96C34 613 aa17.16■□□□□ 0.34
PCF11-204ENST00000530660 ST7Q9NRC1 585 aa17.16■□□□□ 0.34
PCF11-204ENST00000530660 MADDQ8WXG6 1647 aa17.16■□□□□ 0.34
PCF11-204ENST00000530660 CHMP7Q8WUX9 453 aaPredicted RBP17.16■□□□□ 0.34
PCF11-204ENST00000530660 ZBTB40Q9NUA8 1239 aa17.16■□□□□ 0.34
PCF11-204ENST00000530660 CWC22Q9HCG8 908 aaKnown RBP17.16■□□□□ 0.34
PCF11-204ENST00000530660 MORC2Q9Y6X9 1032 aaPredicted RBP17.16■□□□□ 0.34
PCF11-204ENST00000530660 CARMIL2Q6F5E8 1435 aa17.15■□□□□ 0.34
PCF11-204ENST00000530660 HCLS1P14317 486 aaPredicted RBP17.15■□□□□ 0.34
PCF11-204ENST00000530660 KIF18AQ8NI77 898 aa17.15■□□□□ 0.34
PCF11-204ENST00000530660 GADD45BO75293 160 aaPredicted RBP17.15■□□□□ 0.34
PCF11-204ENST00000530660 SPC24Q8NBT2 197 aa17.15■□□□□ 0.34
PCF11-204ENST00000530660 IQGAP3Q86VI3 1631 aa17.15■□□□□ 0.34
PCF11-204ENST00000530660 CALCOCO1Q9P1Z2 691 aa17.14■□□□□ 0.34
PCF11-204ENST00000530660 SYCP2Q9BX26 1530 aa17.14■□□□□ 0.33
PCF11-204ENST00000530660 POLR3AO14802 1390 aaPredicted RBP17.14■□□□□ 0.33
PCF11-204ENST00000530660 SSH1Q8WYL5 1049 aa17.14■□□□□ 0.33
PCF11-204ENST00000530660 NOB1Q9ULX3 412 aaKnown RBP17.14■□□□□ 0.33
PCF11-204ENST00000530660 ATP10AO60312 1499 aa17.13■□□□□ 0.33
PCF11-204ENST00000530660 ATF7IPQ6VMQ6 1270 aa17.13■□□□□ 0.33
PCF11-204ENST00000530660 WDR63Q8IWG1 891 aa17.13■□□□□ 0.33
PCF11-204ENST00000530660 SMARCA5O60264 1052 aaPredicted RBP17.13■□□□□ 0.33
PCF11-204ENST00000530660 CDC42BPBQ9Y5S2 1711 aa17.12■□□□□ 0.33
PCF11-204ENST00000530660 KRT222Q8N1A0 295 aa17.12■□□□□ 0.33
PCF11-204ENST00000530660 PHF23Q9BUL5 403 aaPredicted RBP17.12■□□□□ 0.33
PCF11-204ENST00000530660 FEZ2Q9UHY8 353 aaPredicted RBP17.12■□□□□ 0.33
PCF11-204ENST00000530660 C1orf115Q9H7X2 142 aa17.11■□□□□ 0.33
PCF11-204ENST00000530660 CDC45O75419 566 aa17.11■□□□□ 0.33
PCF11-204ENST00000530660 C16orf45Q96MC5 204 aaPredicted RBP17.11■□□□□ 0.33
PCF11-204ENST00000530660 KDM5AP29375 1690 aaKnown RBP17.11■□□□□ 0.33
PCF11-204ENST00000530660 AP5Z1O43299 807 aa17.11■□□□□ 0.33
PCF11-204ENST00000530660 EXOSC9Q06265 439 aaKnown RBP17.11■□□□□ 0.33
PCF11-204ENST00000530660 SYAP1Q96A49 352 aaPredicted RBP17.11■□□□□ 0.33
PCF11-204ENST00000530660 UVSSAQ2YD98 709 aa17.1■□□□□ 0.33
PCF11-204ENST00000530660 MORC1Q86VD1 984 aa17.1■□□□□ 0.33
PCF11-204ENST00000530660 IFT140Q96RY7 1462 aa17.1■□□□□ 0.33
PCF11-204ENST00000530660 MRC2Q9UBG0 1479 aa17.1■□□□□ 0.33
PCF11-204ENST00000530660 HNRNPH2P55795 449 aaKnown RBP17.09■□□□□ 0.33
PCF11-204ENST00000530660 CEP152O94986 1710 aa17.09■□□□□ 0.33
PCF11-204ENST00000530660 CFAP74Q9C0B2 1584 aa17.09■□□□□ 0.33
PCF11-204ENST00000530660 FAM184AQ8NB25 1140 aa17.09■□□□□ 0.33
PCF11-204ENST00000530660 IQSEC2Q5JU85 1478 aa17.09■□□□□ 0.33
PCF11-204ENST00000530660 MLECQ14165 292 aa17.09■□□□□ 0.33
PCF11-204ENST00000530660 USP26Q9BXU7 913 aa17.09■□□□□ 0.33
PCF11-204ENST00000530660 ERVK-7P63135 1459 aa17.08■□□□□ 0.33
PCF11-204ENST00000530660 KDM4AO75164 1064 aa17.08■□□□□ 0.33
PCF11-204ENST00000530660 GSPT1P15170 499 aaKnown RBP17.08■□□□□ 0.32
PCF11-204ENST00000530660 NOL12Q9UGY1 213 aaKnown RBP eCLIP17.08■□□□□ 0.32
PCF11-204ENST00000530660 V9GYY5 206 aaPredicted RBP17.08■□□□□ 0.32
PCF11-204ENST00000530660 SHPRHQ149N8 1683 aa17.08■□□□□ 0.32
PCF11-204ENST00000530660 ST18O60284 1047 aa17.08■□□□□ 0.32
PCF11-204ENST00000530660 CFAP70Q5T0N1 1121 aa17.08■□□□□ 0.32
PCF11-204ENST00000530660 TMX1Q9H3N1 280 aa17.07■□□□□ 0.32
PCF11-204ENST00000530660 PHF14O94880 888 aa17.07■□□□□ 0.32
PCF11-204ENST00000530660 KMT5BQ4FZB7 885 aa17.07■□□□□ 0.32
PCF11-204ENST00000530660 PREX2Q70Z35 1606 aa17.06■□□□□ 0.32
PCF11-204ENST00000530660 MAST1Q9Y2H9 1570 aa17.06■□□□□ 0.32
PCF11-204ENST00000530660 TNNT3P45378 269 aaPredicted RBP17.06■□□□□ 0.32
PCF11-204ENST00000530660 RAD51AP2Q09MP3 1159 aa17.06■□□□□ 0.32
PCF11-204ENST00000530660 MTHFSP49914 203 aa17.05■□□□□ 0.32
PCF11-204ENST00000530660 SOX12O15370 315 aa17.05■□□□□ 0.32
PCF11-204ENST00000530660 USP48Q86UV5 1035 aa17.05■□□□□ 0.32
PCF11-204ENST00000530660 ARHGAP5Q13017 1502 aa17.05■□□□□ 0.32
PCF11-204ENST00000530660 ANKRD36BQ8N2N9 1353 aa17.05■□□□□ 0.32
PCF11-204ENST00000530660 U2SURPO15042 1029 aaKnown RBP17.04■□□□□ 0.32
PCF11-204ENST00000530660 NOL8Q76FK4 1167 aaKnown RBP17.04■□□□□ 0.32
PCF11-204ENST00000530660 BRD1O95696 1058 aa17.04■□□□□ 0.32
PCF11-204ENST00000530660 PTGS1P23219 599 aa17.04■□□□□ 0.32
PCF11-204ENST00000530660 TCHHQ07283 1943 aa17.04■□□□□ 0.32
PCF11-204ENST00000530660 SMTNL1A8MU46 457 aa17.04■□□□□ 0.32
PCF11-204ENST00000530660 RSPH14Q9UHP6 348 aa17.04■□□□□ 0.32
PCF11-204ENST00000530660 TTC37Q6PGP7 1564 aa17.04■□□□□ 0.32
PCF11-204ENST00000530660 NSD3Q9BZ95 1437 aa17.03■□□□□ 0.32
PCF11-204ENST00000530660 RBM6P78332 1123 aaKnown RBP17.03■□□□□ 0.32
PCF11-204ENST00000530660 LRMPQ12912 555 aa17.03■□□□□ 0.32
PCF11-204ENST00000530660 SYCP1Q15431 976 aa17.03■□□□□ 0.32
PCF11-204ENST00000530660 CCDC27Q2M243 656 aa17.03■□□□□ 0.32
PCF11-204ENST00000530660 DHX37Q8IY37 1157 aaKnown RBP17.03■□□□□ 0.32
PCF11-204ENST00000530660 TNNT1P13805 278 aa17.03■□□□□ 0.32
PCF11-204ENST00000530660 CCDC112Q8NEF3 446 aa17.03■□□□□ 0.32
PCF11-204ENST00000530660 SPHKAPQ2M3C7 1700 aa17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 130.8 ms