RNA–Protein interactions for RNA: ENST00000529526.5

CTNND1-220, Transcript of catenin delta 1, humanhuman

TSL 1 (best) BASIC

Gene CTNND1, Length 6,099 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNND1-220ENST00000529526 CHD1LQ86WJ1 897 aa9.69□□□□□ -0.86
CTNND1-220ENST00000529526 ZNF396Q96N95 335 aaPredicted RBP9.69□□□□□ -0.86
CTNND1-220ENST00000529526 MIS18AQ9NYP9 233 aa9.68□□□□□ -0.86
CTNND1-220ENST00000529526 MBD3O95983 291 aa9.68□□□□□ -0.86
CTNND1-220ENST00000529526 SLC3A2P08195 630 aaKnown RBP9.68□□□□□ -0.86
CTNND1-220ENST00000529526 MCM2P49736 904 aa9.68□□□□□ -0.86
CTNND1-220ENST00000529526 FKBP4Q02790 459 aaKnown RBP eCLIP9.68□□□□□ -0.86
CTNND1-220ENST00000529526 WDR63Q8IWG1 891 aa9.68□□□□□ -0.86
CTNND1-220ENST00000529526 SLC26A8Q96RN1 970 aa9.68□□□□□ -0.86
CTNND1-220ENST00000529526 WDR97A6NE52 1622 aa9.68□□□□□ -0.86
CTNND1-220ENST00000529526 K7ELQ4 463 aaPredicted RBP9.68□□□□□ -0.86
CTNND1-220ENST00000529526 IL1RAPL2Q9NP60 686 aa9.68□□□□□ -0.86
CTNND1-220ENST00000529526 BTBD11A6QL63 1104 aa9.68□□□□□ -0.86
CTNND1-220ENST00000529526 NUP133Q8WUM0 1156 aa9.68□□□□□ -0.86
CTNND1-220ENST00000529526 DDX24Q9GZR7 859 aaKnown RBP eCLIP9.68□□□□□ -0.861e-7■■■□□ 16.3
CTNND1-220ENST00000529526 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.68□□□□□ -0.861e-6■■■■■ 38.5
CTNND1-220ENST00000529526 CWC27Q6UX04 472 aaKnown RBP9.67□□□□□ -0.86
CTNND1-220ENST00000529526 MAGEC2Q9UBF1 373 aaPredicted RBP9.67□□□□□ -0.86
CTNND1-220ENST00000529526 DAPK1P53355 1430 aa9.67□□□□□ -0.86
CTNND1-220ENST00000529526 HECW1Q76N89 1606 aa9.67□□□□□ -0.86
CTNND1-220ENST00000529526 RAPGEF3O95398 923 aa9.67□□□□□ -0.86
CTNND1-220ENST00000529526 PDCP20941 246 aa9.67□□□□□ -0.86
CTNND1-220ENST00000529526 BACH2Q9BYV9 841 aa9.67□□□□□ -0.86
CTNND1-220ENST00000529526 KRT18P05783 430 aaKnown RBP9.67□□□□□ -0.86
CTNND1-220ENST00000529526 TMEM132AQ24JP5 1023 aa9.67□□□□□ -0.86
CTNND1-220ENST00000529526 CCDC85AQ96PX6 553 aaPredicted RBP9.67□□□□□ -0.86
CTNND1-220ENST00000529526 ZNF692Q9BU19 519 aaPredicted RBP9.67□□□□□ -0.86
CTNND1-220ENST00000529526 CCDC69A6NI79 296 aa9.66□□□□□ -0.86
CTNND1-220ENST00000529526 SRGAP3O43295 1099 aa9.66□□□□□ -0.86
CTNND1-220ENST00000529526 HSP90B2PQ58FF3 399 aa9.66□□□□□ -0.86
CTNND1-220ENST00000529526 ACBD3Q9H3P7 528 aa9.66□□□□□ -0.86
CTNND1-220ENST00000529526 GNL3LQ9NVN8 582 aaKnown RBP9.66□□□□□ -0.86
CTNND1-220ENST00000529526 PPP1R1BQ9UD71 204 aaPredicted RBP9.66□□□□□ -0.86
CTNND1-220ENST00000529526 SPG7Q9UQ90 795 aa9.66□□□□□ -0.86
CTNND1-220ENST00000529526 NCAPD3P42695 1498 aa9.66□□□□□ -0.86
CTNND1-220ENST00000529526 TXLNAP40222 546 aa9.66□□□□□ -0.86
CTNND1-220ENST00000529526 ME1P48163 572 aa9.66□□□□□ -0.86
CTNND1-220ENST00000529526 NUTM1Q86Y26 1132 aa9.66□□□□□ -0.86
CTNND1-220ENST00000529526 NSD3Q9BZ95 1437 aa9.66□□□□□ -0.86
CTNND1-220ENST00000529526 SERPINC1P01008 464 aa9.66□□□□□ -0.86
CTNND1-220ENST00000529526 RBM10P98175 930 aaKnown RBP9.66□□□□□ -0.86
CTNND1-220ENST00000529526 FILIP1LQ4L180 1135 aa9.66□□□□□ -0.86
CTNND1-220ENST00000529526 TNMDQ9H2S6 317 aa9.66□□□□□ -0.86
CTNND1-220ENST00000529526 EFCAB5A4FU69 1503 aa9.65□□□□□ -0.86
CTNND1-220ENST00000529526 CCDC57Q2TAC2 916 aa9.65□□□□□ -0.86
CTNND1-220ENST00000529526 THUMPD2Q9BTF0 503 aaKnown RBP9.65□□□□□ -0.86
CTNND1-220ENST00000529526 CCDC173Q0VFZ6 552 aa9.65□□□□□ -0.86
CTNND1-220ENST00000529526 TIAM1Q13009 1591 aa9.65□□□□□ -0.86
CTNND1-220ENST00000529526 TMEM57Q8N5G2 664 aa9.65□□□□□ -0.86
CTNND1-220ENST00000529526 JAKMIP1Q96N16 626 aaKnown RBP9.65□□□□□ -0.86
CTNND1-220ENST00000529526 PDRG1Q9NUG6 133 aa9.65□□□□□ -0.86
CTNND1-220ENST00000529526 SUPT6HQ7KZ85 1726 aaKnown RBP9.65□□□□□ -0.86
CTNND1-220ENST00000529526 LARP1BQ659C4 914 aaKnown RBP9.65□□□□□ -0.86
CTNND1-220ENST00000529526 SMARCE1Q969G3 411 aa9.65□□□□□ -0.86
CTNND1-220ENST00000529526 SNAPC4Q5SXM2 1469 aa9.65□□□□□ -0.86
CTNND1-220ENST00000529526 CDK13Q14004 1512 aaKnown RBP9.65□□□□□ -0.87
CTNND1-220ENST00000529526 AEBP1Q8IUX7 1158 aa9.64□□□□□ -0.87
CTNND1-220ENST00000529526 THEMISQ8N1K5 641 aaPredicted RBP9.64□□□□□ -0.87
CTNND1-220ENST00000529526 PIBF1Q8WXW3 757 aa9.64□□□□□ -0.87
CTNND1-220ENST00000529526 ZHX3Q9H4I2 956 aa9.64□□□□□ -0.87
CTNND1-220ENST00000529526 CDR1P51861 262 aa9.64□□□□□ -0.87
CTNND1-220ENST00000529526 SKAP1Q86WV1 359 aa9.64□□□□□ -0.87
CTNND1-220ENST00000529526 CCAR1Q8IX12 1150 aaKnown RBP9.64□□□□□ -0.87
CTNND1-220ENST00000529526 MPHOSPH8Q99549 860 aa9.64□□□□□ -0.87
CTNND1-220ENST00000529526 BICDL1Q6ZP65 573 aa9.64□□□□□ -0.87
CTNND1-220ENST00000529526 MCM10Q7L590 875 aa9.64□□□□□ -0.87
CTNND1-220ENST00000529526 ANKRD1Q15327 319 aa9.64□□□□□ -0.87
CTNND1-220ENST00000529526 IL27Q8NEV9 243 aa9.64□□□□□ -0.87
CTNND1-220ENST00000529526 TROQ12816 1431 aaPredicted RBP9.64□□□□□ -0.87
CTNND1-220ENST00000529526 SMARCA5O60264 1052 aaPredicted RBP9.64□□□□□ -0.87
CTNND1-220ENST00000529526 DCTN1Q14203 1278 aa9.64□□□□□ -0.87
CTNND1-220ENST00000529526 NACAP1Q9BZK3 213 aa9.64□□□□□ -0.87
CTNND1-220ENST00000529526 WDR33Q9C0J8 1336 aaKnown RBP9.64□□□□□ -0.87
CTNND1-220ENST00000529526 CCDC192P0DO97 292 aa9.63□□□□□ -0.87
CTNND1-220ENST00000529526 PLEKHH2Q8IVE3 1493 aa9.63□□□□□ -0.87
CTNND1-220ENST00000529526 MRC2Q9UBG0 1479 aa9.63□□□□□ -0.87
CTNND1-220ENST00000529526 RBM5P52756 815 aaKnown RBP eCLIP9.63□□□□□ -0.87
CTNND1-220ENST00000529526 TRIM22Q8IYM9 498 aa9.63□□□□□ -0.87
CTNND1-220ENST00000529526 TMPOP42166 694 aaKnown RBP9.63□□□□□ -0.87
CTNND1-220ENST00000529526 ZC3H6P61129 1189 aaKnown RBP9.63□□□□□ -0.87
CTNND1-220ENST00000529526 FAM177A1Q8N128 213 aaPredicted RBP9.63□□□□□ -0.87
CTNND1-220ENST00000529526 CT47B1P0C2W7 299 aaPredicted RBP9.62□□□□□ -0.87
CTNND1-220ENST00000529526 EXOC6BQ9Y2D4 811 aa9.62□□□□□ -0.87
CTNND1-220ENST00000529526 SLFN5Q08AF3 891 aa9.62□□□□□ -0.87
CTNND1-220ENST00000529526 BLOC1S2Q6QNY1 142 aa9.62□□□□□ -0.87
CTNND1-220ENST00000529526 NFE2L2Q16236 605 aa9.62□□□□□ -0.87
CTNND1-220ENST00000529526 WAPLQ7Z5K2 1190 aa9.62□□□□□ -0.87
CTNND1-220ENST00000529526 SPATA32Q96LK8 384 aa9.62□□□□□ -0.87
CTNND1-220ENST00000529526 GRPEL1Q9HAV7 217 aa9.62□□□□□ -0.87
CTNND1-220ENST00000529526 KRT85P78386 507 aa9.62□□□□□ -0.87
CTNND1-220ENST00000529526 TANGO6Q9C0B7 1094 aa9.62□□□□□ -0.87
CTNND1-220ENST00000529526 TDO2P48775 406 aa9.62□□□□□ -0.87
CTNND1-220ENST00000529526 USHBP1Q8N6Y0 703 aa9.62□□□□□ -0.87
CTNND1-220ENST00000529526 GNAT3A8MTJ3 354 aa9.61□□□□□ -0.87
CTNND1-220ENST00000529526 CASTP20810 708 aaKnown RBP9.61□□□□□ -0.87
CTNND1-220ENST00000529526 JMYQ8N9B5 988 aa9.61□□□□□ -0.87
CTNND1-220ENST00000529526 NUDT16Q96DE0 195 aaKnown RBP9.61□□□□□ -0.87
CTNND1-220ENST00000529526 FCHSD2O94868 740 aa9.61□□□□□ -0.87
CTNND1-220ENST00000529526 DDX11Q96FC9 970 aa9.61□□□□□ -0.87
CTNND1-220ENST00000529526 SLC52A1Q9NWF4 448 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms