RNA–Protein interactions for RNA: ENST00000513284.5

RNF4-218, Transcript of ring finger protein 4, humanhuman

TSL 4

Gene RNF4, Length 517 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-218ENST00000513284 ITSN1Q15811 1721 aa16.56■□□□□ 0.24
RNF4-218ENST00000513284 CHD4Q14839 1912 aa16.55■□□□□ 0.24
RNF4-218ENST00000513284 MTFR1LQ9H019 292 aa16.54■□□□□ 0.24
RNF4-218ENST00000513284 LRRC37A3O60309 1634 aa16.54■□□□□ 0.24
RNF4-218ENST00000513284 BCL9O00512 1426 aa16.53■□□□□ 0.24
RNF4-218ENST00000513284 AATKQ6ZMQ8 1374 aa16.53■□□□□ 0.24
RNF4-218ENST00000513284 STK32BQ9NY57 414 aa16.53■□□□□ 0.24
RNF4-218ENST00000513284 ARHGEF28Q8N1W1 1705 aaKnown RBP16.53■□□□□ 0.24
RNF4-218ENST00000513284 TOPAZ1Q8N9V7 1692 aa16.53■□□□□ 0.24
RNF4-218ENST00000513284 GOLGB1Q14789 3259 aaKnown RBP16.51■□□□□ 0.23
RNF4-218ENST00000513284 ZBTB7CA1YPR0 619 aa16.51■□□□□ 0.23
RNF4-218ENST00000513284 TOM1L2Q6ZVM7 507 aa16.51■□□□□ 0.23
RNF4-218ENST00000513284 ARXQ96QS3 562 aa16.51■□□□□ 0.23
RNF4-218ENST00000513284 COL18A1P39060 1754 aa16.5■□□□□ 0.23
RNF4-218ENST00000513284 WDR17Q8IZU2 1322 aa16.48■□□□□ 0.23
RNF4-218ENST00000513284 NLRP6P59044 892 aa16.48■□□□□ 0.23
RNF4-218ENST00000513284 STAC3Q96MF2 364 aa16.48■□□□□ 0.23
RNF4-218ENST00000513284 MAP3K5Q99683 1374 aa16.48■□□□□ 0.23
RNF4-218ENST00000513284 GIGYF1O75420 1035 aaPredicted RBP16.45■□□□□ 0.22
RNF4-218ENST00000513284 GPR162Q16538 588 aa16.45■□□□□ 0.22
RNF4-218ENST00000513284 ARHGEF25Q86VW2 580 aa16.45■□□□□ 0.22
RNF4-218ENST00000513284 CDCA7Q9BWT1 371 aaPredicted RBP16.45■□□□□ 0.22
RNF4-218ENST00000513284 CARD10Q9BWT7 1032 aa16.45■□□□□ 0.22
RNF4-218ENST00000513284 CABP2Q9NPB3 220 aa16.45■□□□□ 0.22
RNF4-218ENST00000513284 SLIT3O75094 1523 aa16.45■□□□□ 0.22
RNF4-218ENST00000513284 PPIP5K1Q6PFW1 1433 aa16.45■□□□□ 0.22
RNF4-218ENST00000513284 EXOC5O00471 708 aa16.44■□□□□ 0.22
RNF4-218ENST00000513284 ZNF827Q17R98 1081 aa16.44■□□□□ 0.22
RNF4-218ENST00000513284 NBPF1Q3BBV0 1214 aa16.44■□□□□ 0.22
RNF4-218ENST00000513284 LRRC4BQ9NT99 713 aa16.44■□□□□ 0.22
RNF4-218ENST00000513284 CABP1Q9NZU7 370 aa16.44■□□□□ 0.22
RNF4-218ENST00000513284 WNK3Q9BYP7 1800 aa16.42■□□□□ 0.22
RNF4-218ENST00000513284 BRD4O60885 1362 aaPredicted RBP16.42■□□□□ 0.22
RNF4-218ENST00000513284 ACSBG1Q96GR2 724 aa16.42■□□□□ 0.22
RNF4-218ENST00000513284 USP6P35125 1406 aa16.42■□□□□ 0.22
RNF4-218ENST00000513284 AKAP12Q02952 1782 aa16.41■□□□□ 0.22
RNF4-218ENST00000513284 SRPK2P78362 688 aaKnown RBP16.41■□□□□ 0.22
RNF4-218ENST00000513284 PAPPAQ13219 1627 aa16.41■□□□□ 0.22
RNF4-218ENST00000513284 RGPD5Q99666 1765 aa16.41■□□□□ 0.22
RNF4-218ENST00000513284 SHANK3Q9BYB0 1731 aa16.39■□□□□ 0.21
RNF4-218ENST00000513284 NLGN2Q8NFZ4 835 aa16.39■□□□□ 0.21
RNF4-218ENST00000513284 AKT1S1Q96B36 256 aa16.39■□□□□ 0.21
RNF4-218ENST00000513284 RAB3GAP2Q9H2M9 1393 aa16.38■□□□□ 0.21
RNF4-218ENST00000513284 CPSF1Q10570 1443 aaKnown RBP16.37■□□□□ 0.21
RNF4-218ENST00000513284 PIK3C2AO00443 1686 aa16.37■□□□□ 0.21
RNF4-218ENST00000513284 CSB-PGBD3P0DP91 1061 aa16.37■□□□□ 0.21
RNF4-218ENST00000513284 YBX3P16989 372 aaKnown RBP eCLIP16.36■□□□□ 0.21
RNF4-218ENST00000513284 NHSQ6T4R5 1651 aa16.36■□□□□ 0.21
RNF4-218ENST00000513284 SOX12O15370 315 aa16.35■□□□□ 0.21
RNF4-218ENST00000513284 PELP1Q8IZL8 1130 aaKnown RBP16.35■□□□□ 0.21
RNF4-218ENST00000513284 SLC16A10Q8TF71 515 aa16.35■□□□□ 0.21
RNF4-218ENST00000513284 TTC21BQ7Z4L5 1316 aa16.35■□□□□ 0.21
RNF4-218ENST00000513284 COL24A1Q17RW2 1714 aa16.34■□□□□ 0.21
RNF4-218ENST00000513284 KLHL34Q8N239 644 aa16.34■□□□□ 0.21
RNF4-218ENST00000513284 PNPLA7Q6ZV29 1317 aa16.34■□□□□ 0.21
RNF4-218ENST00000513284 CENPJQ9HC77 1338 aaPredicted RBP16.34■□□□□ 0.21
RNF4-218ENST00000513284 TNS2Q63HR2 1409 aa16.34■□□□□ 0.21
RNF4-218ENST00000513284 KCNH5Q8NCM2 988 aa16.33■□□□□ 0.2
RNF4-218ENST00000513284 CCDC7Q96M83 1385 aa16.33■□□□□ 0.2
RNF4-218ENST00000513284 BTAF1O14981 1849 aa16.32■□□□□ 0.2
RNF4-218ENST00000513284 KCNQ4P56696 695 aa16.32■□□□□ 0.2
RNF4-218ENST00000513284 TRPM1Q7Z4N2 1603 aa16.32■□□□□ 0.2
RNF4-218ENST00000513284 NFAT5O94916 1531 aa16.3■□□□□ 0.2
RNF4-218ENST00000513284 POLD1P28340 1107 aa16.3■□□□□ 0.2
RNF4-218ENST00000513284 KIAA1210Q9ULL0 1709 aa16.3■□□□□ 0.2
RNF4-218ENST00000513284 ZNF692Q9BU19 519 aaPredicted RBP16.29■□□□□ 0.2
RNF4-218ENST00000513284 GRIN3BO60391 1043 aa16.28■□□□□ 0.2
RNF4-218ENST00000513284 IL2RBP14784 551 aa16.28■□□□□ 0.2
RNF4-218ENST00000513284 ABCC6O95255 1503 aa16.28■□□□□ 0.2
RNF4-218ENST00000513284 SLC27A3Q5K4L6 730 aa16.27■□□□□ 0.2
RNF4-218ENST00000513284 NLRP2Q9NX02 1062 aa16.27■□□□□ 0.2
RNF4-218ENST00000513284 ATP10DQ9P241 1426 aa16.27■□□□□ 0.19
RNF4-218ENST00000513284 ERBB3P21860 1342 aa16.26■□□□□ 0.19
RNF4-218ENST00000513284 QSER1Q2KHR3 1735 aa16.26■□□□□ 0.19
RNF4-218ENST00000513284 HSPA6P17066 643 aa16.26■□□□□ 0.19
RNF4-218ENST00000513284 TFCP2L1Q9NZI6 479 aa16.26■□□□□ 0.19
RNF4-218ENST00000513284 KAT6BQ8WYB5 2073 aa16.26■□□□□ 0.19
RNF4-218ENST00000513284 TTC21AQ8NDW8 1320 aa16.25■□□□□ 0.19
RNF4-218ENST00000513284 TUBGCP6Q96RT7 1819 aa16.24■□□□□ 0.19
RNF4-218ENST00000513284 COL23A1Q86Y22 540 aaPredicted RBP16.24■□□□□ 0.19
RNF4-218ENST00000513284 DDX54Q8TDD1 881 aaKnown RBP16.23■□□□□ 0.19
RNF4-218ENST00000513284 QRICH2Q9H0J4 1663 aa16.23■□□□□ 0.19
RNF4-218ENST00000513284 PRIM1P49642 420 aaKnown RBP16.22■□□□□ 0.19
RNF4-218ENST00000513284 ANKRD24Q8TF21 1146 aa16.22■□□□□ 0.19
RNF4-218ENST00000513284 GPBP1L1Q9HC44 474 aaPredicted RBP16.22■□□□□ 0.19
RNF4-218ENST00000513284 EVC2Q86UK5 1308 aa16.21■□□□□ 0.19
RNF4-218ENST00000513284 ADCY9O60503 1353 aa16.21■□□□□ 0.19
RNF4-218ENST00000513284 USP31Q70CQ4 1352 aa16.21■□□□□ 0.19
RNF4-218ENST00000513284 ZNF526Q8TF50 670 aaPredicted RBP16.2■□□□□ 0.18
RNF4-218ENST00000513284 NSD2O96028 1365 aa16.2■□□□□ 0.18
RNF4-218ENST00000513284 KTN1Q86UP2 1357 aaKnown RBP16.19■□□□□ 0.18
RNF4-218ENST00000513284 MSL1Q68DK7 614 aa16.19■□□□□ 0.18
RNF4-218ENST00000513284 NME9Q86XW9 330 aa16.19■□□□□ 0.18
RNF4-218ENST00000513284 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.19■□□□□ 0.18
RNF4-218ENST00000513284 DNAJC5GQ8N7S2 189 aa16.18■□□□□ 0.18
RNF4-218ENST00000513284 KIF3CO14782 793 aa16.17■□□□□ 0.18
RNF4-218ENST00000513284 SYTL4Q96C24 671 aaPredicted RBP16.17■□□□□ 0.18
RNF4-218ENST00000513284 CD2APQ9Y5K6 639 aa16.17■□□□□ 0.18
RNF4-218ENST00000513284 LY75O60449 1722 aa16.16■□□□□ 0.18
RNF4-218ENST00000513284 ANKRD36BQ8N2N9 1353 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms