RNA–Protein interactions for RNA: ENST00000506368.5

SCLT1-208, Transcript of sodium channel and clathrin linker 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCLT1, Length 2,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCLT1-208ENST00000506368 PRDM4Q9UKN5 801 aa19.69■□□□□ 0.74
SCLT1-208ENST00000506368 NSD3Q9BZ95 1437 aa19.69■□□□□ 0.74
SCLT1-208ENST00000506368 TRIM27P14373 513 aa19.69■□□□□ 0.74
SCLT1-208ENST00000506368 BCL2L13Q9BXK5 485 aa19.69■□□□□ 0.74
SCLT1-208ENST00000506368 SMC4Q9NTJ3 1288 aa19.69■□□□□ 0.74
SCLT1-208ENST00000506368 ZBTB40Q9NUA8 1239 aa19.69■□□□□ 0.74
SCLT1-208ENST00000506368 NEUROD2Q15784 382 aa19.68■□□□□ 0.74
SCLT1-208ENST00000506368 GCC1Q96CN9 775 aa19.68■□□□□ 0.74
SCLT1-208ENST00000506368 IFT172Q9UG01 1749 aa19.68■□□□□ 0.74
SCLT1-208ENST00000506368 BAG4O95429 457 aaKnown RBP19.67■□□□□ 0.74
SCLT1-208ENST00000506368 CHD1LQ86WJ1 897 aa19.67■□□□□ 0.74
SCLT1-208ENST00000506368 KIF2CQ99661 725 aa19.67■□□□□ 0.74
SCLT1-208ENST00000506368 ITPRIPQ8IWB1 547 aa19.67■□□□□ 0.74
SCLT1-208ENST00000506368 PUS7Q96PZ0 661 aaKnown RBP19.67■□□□□ 0.74
SCLT1-208ENST00000506368 NRXN1Q9ULB1 1477 aa19.67■□□□□ 0.74
SCLT1-208ENST00000506368 ZNF428Q96B54 188 aa19.66■□□□□ 0.74
SCLT1-208ENST00000506368 RRP7AQ9Y3A4 280 aaKnown RBP19.66■□□□□ 0.74
SCLT1-208ENST00000506368 ZKSCAN5Q9Y2L8 839 aa19.65■□□□□ 0.74
SCLT1-208ENST00000506368 CWC22Q9HCG8 908 aaKnown RBP19.64■□□□□ 0.74
SCLT1-208ENST00000506368 ALDH1L2Q3SY69 923 aa19.64■□□□□ 0.73
SCLT1-208ENST00000506368 MED14O60244 1454 aa19.64■□□□□ 0.73
SCLT1-208ENST00000506368 RABEP1Q15276 862 aa19.63■□□□□ 0.73
SCLT1-208ENST00000506368 THEMISQ8N1K5 641 aaPredicted RBP19.63■□□□□ 0.73
SCLT1-208ENST00000506368 CCDC39Q9UFE4 941 aa19.63■□□□□ 0.73
SCLT1-208ENST00000506368 R3HCC1Q9Y3T6 440 aaKnown RBP19.63■□□□□ 0.73
SCLT1-208ENST00000506368 UQCRHLA0A096LP55 91 aa19.63■□□□□ 0.73
SCLT1-208ENST00000506368 UQCRHP07919 91 aa19.63■□□□□ 0.73
SCLT1-208ENST00000506368 LTKP29376 864 aa19.63■□□□□ 0.73
SCLT1-208ENST00000506368 BRPF1P55201 1214 aaPredicted RBP19.63■□□□□ 0.73
SCLT1-208ENST00000506368 SASS6Q6UVJ0 657 aa19.63■□□□□ 0.73
SCLT1-208ENST00000506368 SSFA2P28290 1259 aa19.62■□□□□ 0.73
SCLT1-208ENST00000506368 TMEM2Q9UHN6 1383 aa19.62■□□□□ 0.73
SCLT1-208ENST00000506368 ZSCAN23Q3MJ62 389 aa19.61■□□□□ 0.73
SCLT1-208ENST00000506368 UTP14CQ5TAP6 766 aaKnown RBP19.61■□□□□ 0.73
SCLT1-208ENST00000506368 NCKAP5LQ9HCH0 1330 aa19.61■□□□□ 0.73
SCLT1-208ENST00000506368 FAM13BQ9NYF5 915 aa19.6■□□□□ 0.73
SCLT1-208ENST00000506368 CYP2E1P05181 493 aaPredicted RBP19.6■□□□□ 0.73
SCLT1-208ENST00000506368 MTHFSP49914 203 aa19.6■□□□□ 0.73
SCLT1-208ENST00000506368 SSH1Q8WYL5 1049 aa19.6■□□□□ 0.73
SCLT1-208ENST00000506368 RIMS2Q9UQ26 1411 aa19.59■□□□□ 0.73
SCLT1-208ENST00000506368 NEXMIFQ5QGS0 1516 aa19.59■□□□□ 0.73
SCLT1-208ENST00000506368 ZFYVE9O95405 1425 aa19.59■□□□□ 0.73
SCLT1-208ENST00000506368 PPLO60437 1756 aa19.58■□□□□ 0.73
SCLT1-208ENST00000506368 CDC45O75419 566 aa19.58■□□□□ 0.73
SCLT1-208ENST00000506368 EXOSC9Q06265 439 aaKnown RBP19.58■□□□□ 0.73
SCLT1-208ENST00000506368 TMEM57Q8N5G2 664 aa19.58■□□□□ 0.73
SCLT1-208ENST00000506368 STRCQ7RTU9 1775 aa19.58■□□□□ 0.72
SCLT1-208ENST00000506368 SLIT1O75093 1534 aa19.58■□□□□ 0.72
SCLT1-208ENST00000506368 ARHGAP23Q9P227 1491 aa19.58■□□□□ 0.72
SCLT1-208ENST00000506368 TXNDC2Q86VQ3 553 aa19.58■□□□□ 0.72
SCLT1-208ENST00000506368 GAS2L2Q8NHY3 880 aa19.58■□□□□ 0.72
SCLT1-208ENST00000506368 PODXL2Q9NZ53 605 aa19.58■□□□□ 0.72
SCLT1-208ENST00000506368 QRICH2Q9H0J4 1663 aa19.57■□□□□ 0.72
SCLT1-208ENST00000506368 LNPKQ9C0E8 428 aa19.57■□□□□ 0.72
SCLT1-208ENST00000506368 LMBRD1Q9NUN5 540 aa19.57■□□□□ 0.72
SCLT1-208ENST00000506368 NOB1Q9ULX3 412 aaKnown RBP19.57■□□□□ 0.72
SCLT1-208ENST00000506368 RBM10P98175 930 aaKnown RBP19.56■□□□□ 0.72
SCLT1-208ENST00000506368 TBC1D9Q6ZT07 1266 aa19.56■□□□□ 0.72
SCLT1-208ENST00000506368 NCLP19338 710 aaKnown RBP19.56■□□□□ 0.72
SCLT1-208ENST00000506368 CFAP70Q5T0N1 1121 aa19.56■□□□□ 0.72
SCLT1-208ENST00000506368 EIF2AK3Q9NZJ5 1116 aaKnown RBP19.56■□□□□ 0.72
SCLT1-208ENST00000506368 PIK3R4Q99570 1358 aa19.55■□□□□ 0.72
SCLT1-208ENST00000506368 U2AF1L5P0DN76 240 aaPredicted RBP19.55■□□□□ 0.72
SCLT1-208ENST00000506368 U2AF1Q01081 240 aaKnown RBP eCLIP19.55■□□□□ 0.72
SCLT1-208ENST00000506368 LRSAM1Q6UWE0 723 aa19.55■□□□□ 0.72
SCLT1-208ENST00000506368 ARHGAP45Q92619 1136 aa19.55■□□□□ 0.72
SCLT1-208ENST00000506368 ADGRF5Q8IZF2 1346 aa19.54■□□□□ 0.72
SCLT1-208ENST00000506368 CD2BP2O95400 341 aaKnown RBP19.54■□□□□ 0.72
SCLT1-208ENST00000506368 MBD3O95983 291 aa19.54■□□□□ 0.72
SCLT1-208ENST00000506368 CAVIN1Q6NZI2 390 aaKnown RBP19.54■□□□□ 0.72
SCLT1-208ENST00000506368 ANKLE2Q86XL3 938 aa19.54■□□□□ 0.72
SCLT1-208ENST00000506368 CCDC94Q9BW85 323 aaPredicted RBP19.54■□□□□ 0.72
SCLT1-208ENST00000506368 MCTP1Q6DN14 999 aa19.53■□□□□ 0.72
SCLT1-208ENST00000506368 PPIP5K1Q6PFW1 1433 aa19.53■□□□□ 0.72
SCLT1-208ENST00000506368 RBSNQ9H1K0 784 aa19.53■□□□□ 0.72
SCLT1-208ENST00000506368 ANKRD36BQ8N2N9 1353 aa19.53■□□□□ 0.72
SCLT1-208ENST00000506368 TMPOP42166 694 aaKnown RBP19.52■□□□□ 0.72
SCLT1-208ENST00000506368 HMGN5P82970 282 aaKnown RBP19.52■□□□□ 0.72
SCLT1-208ENST00000506368 PRIMPOLQ96LW4 560 aa19.52■□□□□ 0.72
SCLT1-208ENST00000506368 EID1Q9Y6B2 187 aa19.52■□□□□ 0.72
SCLT1-208ENST00000506368 PLEKHF1Q96S99 279 aa19.52■□□□□ 0.71
SCLT1-208ENST00000506368 XPCQ01831 940 aaPredicted RBP19.51■□□□□ 0.71
SCLT1-208ENST00000506368 TSR2Q969E8 191 aaKnown RBP19.51■□□□□ 0.71
SCLT1-208ENST00000506368 KLHL34Q8N239 644 aa19.5■□□□□ 0.71
SCLT1-208ENST00000506368 PRIM1P49642 420 aaKnown RBP19.5■□□□□ 0.71
SCLT1-208ENST00000506368 ANKRD45Q5TZF3 282 aa19.5■□□□□ 0.71
SCLT1-208ENST00000506368 PTCH1Q13635 1447 aa19.5■□□□□ 0.71
SCLT1-208ENST00000506368 ST18O60284 1047 aa19.49■□□□□ 0.71
SCLT1-208ENST00000506368 TRIM35Q9UPQ4 493 aa19.49■□□□□ 0.71
SCLT1-208ENST00000506368 RPGRIP1LQ68CZ1 1315 aa19.49■□□□□ 0.71
SCLT1-208ENST00000506368 KIF24Q5T7B8 1368 aa19.49■□□□□ 0.71
SCLT1-208ENST00000506368 DMTNQ08495 405 aa19.48■□□□□ 0.71
SCLT1-208ENST00000506368 KIAA2012Q0VF49 1180 aa19.48■□□□□ 0.71
SCLT1-208ENST00000506368 MYRIPQ8NFW9 859 aa19.48■□□□□ 0.71
SCLT1-208ENST00000506368 SLC26A8Q96RN1 970 aa19.48■□□□□ 0.71
SCLT1-208ENST00000506368 FOXD4L1Q9NU39 408 aa19.48■□□□□ 0.71
SCLT1-208ENST00000506368 TNNT2P45379 298 aaPredicted RBP19.48■□□□□ 0.71
SCLT1-208ENST00000506368 COL3A1P02461 1466 aaPredicted RBP19.48■□□□□ 0.71
SCLT1-208ENST00000506368 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.47■□□□□ 0.71
SCLT1-208ENST00000506368 SYAP1Q96A49 352 aaPredicted RBP19.47■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms