RNA–Protein interactions for RNA: ENST00000503742.5

UBE2D3-216, Transcript of ubiquitin conjugating enzyme E2 D3, humanhuman

TSL 1 (best)

Gene UBE2D3, Length 1,977 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D3-216ENST00000503742 FLT4P35916 1363 aa27.61■■■□□ 2.01
UBE2D3-216ENST00000503742 NLRP6P59044 892 aa27.6■■■□□ 2.01
UBE2D3-216ENST00000503742 EXOSC9Q06265 439 aaKnown RBP27.6■■■□□ 2.01
UBE2D3-216ENST00000503742 SOX12O15370 315 aa27.59■■■□□ 2.01
UBE2D3-216ENST00000503742 AEBP1Q8IUX7 1158 aa27.58■■■□□ 2.01
UBE2D3-216ENST00000503742 SULT6B1Q6IMI4 303 aa27.57■■■□□ 2
UBE2D3-216ENST00000503742 KIF24Q5T7B8 1368 aa27.57■■■□□ 2
UBE2D3-216ENST00000503742 CALD1Q05682 793 aaKnown RBP27.56■■■□□ 2
UBE2D3-216ENST00000503742 ABTB2Q8N961 1025 aa27.56■■■□□ 2
UBE2D3-216ENST00000503742 KDM2BQ8NHM5 1336 aa27.56■■■□□ 2
UBE2D3-216ENST00000503742 ARHGEF10O15013 1369 aa27.55■■■□□ 2
UBE2D3-216ENST00000503742 CANXP27824 592 aaKnown RBP27.55■■■□□ 2
UBE2D3-216ENST00000503742 LMOD3Q0VAK6 560 aa27.55■■■□□ 2
UBE2D3-216ENST00000503742 ESCO1Q5FWF5 840 aa27.54■■■□□ 2
UBE2D3-216ENST00000503742 FRAT1Q92837 279 aaPredicted RBP27.54■■■□□ 2
UBE2D3-216ENST00000503742 C14orf37Q86TY3 774 aa27.53■■■□□ 2
UBE2D3-216ENST00000503742 PANK1Q8TE04 598 aa27.53■■■□□ 2
UBE2D3-216ENST00000503742 BCL2L13Q9BXK5 485 aa27.53■■■□□ 2
UBE2D3-216ENST00000503742 PAK3O75914 559 aaPredicted RBP27.52■■■□□ 2
UBE2D3-216ENST00000503742 ZNF853P0CG23 659 aa27.52■■■□□ 2
UBE2D3-216ENST00000503742 AMPHP49418 695 aa27.52■■■□□ 2
UBE2D3-216ENST00000503742 NUTM2GQ5VZR2 741 aa27.51■■■□□ 2
UBE2D3-216ENST00000503742 PROSER2Q86WR7 435 aaPredicted RBP27.51■■■□□ 2
UBE2D3-216ENST00000503742 THUMPD2Q9BTF0 503 aaKnown RBP27.51■■■□□ 2
UBE2D3-216ENST00000503742 IFT57Q9NWB7 429 aa27.51■■■□□ 2
UBE2D3-216ENST00000503742 KDRP35968 1356 aa27.5■■□□□ 1.99
UBE2D3-216ENST00000503742 GNAI1P63096 354 aa27.49■■□□□ 1.99
UBE2D3-216ENST00000503742 CENPQQ7L2Z9 268 aaPredicted RBP27.49■■□□□ 1.99
UBE2D3-216ENST00000503742 COG6Q9Y2V7 657 aa27.49■■□□□ 1.99
UBE2D3-216ENST00000503742 PSME1Q06323 249 aa27.48■■□□□ 1.99
UBE2D3-216ENST00000503742 SSH1Q8WYL5 1049 aa27.48■■□□□ 1.99
UBE2D3-216ENST00000503742 IGSF1Q8N6C5 1336 aa27.48■■□□□ 1.99
UBE2D3-216ENST00000503742 RLBP1P12271 317 aa27.47■■□□□ 1.99
UBE2D3-216ENST00000503742 HOXC9P31274 260 aa27.47■■□□□ 1.99
UBE2D3-216ENST00000503742 TNNQ9UQP3 1299 aa27.47■■□□□ 1.99
UBE2D3-216ENST00000503742 ORAI2Q96SN7 254 aa27.46■■□□□ 1.99
UBE2D3-216ENST00000503742 SMC4Q9NTJ3 1288 aa27.46■■□□□ 1.99
UBE2D3-216ENST00000503742 STRCP1A6NGW2 1772 aa27.46■■□□□ 1.99
UBE2D3-216ENST00000503742 NFAT5O94916 1531 aa27.46■■□□□ 1.99
UBE2D3-216ENST00000503742 ZKSCAN2Q63HK3 967 aa27.46■■□□□ 1.99
UBE2D3-216ENST00000503742 ZNF428Q96B54 188 aa27.46■■□□□ 1.99
UBE2D3-216ENST00000503742 C19orf44Q9H6X5 657 aa27.46■■□□□ 1.99
UBE2D3-216ENST00000503742 TCERG1O14776 1098 aaKnown RBP27.45■■□□□ 1.98
UBE2D3-216ENST00000503742 AAMPQ13685 434 aa27.45■■□□□ 1.98
UBE2D3-216ENST00000503742 CFAP44Q96MT7 982 aa27.45■■□□□ 1.98
UBE2D3-216ENST00000503742 EYA1Q99502 592 aa27.45■■□□□ 1.98
UBE2D3-216ENST00000503742 LAS1LQ9Y4W2 734 aaKnown RBP27.45■■□□□ 1.98
UBE2D3-216ENST00000503742 RTL1A6NKG5 1358 aa27.45■■□□□ 1.98
UBE2D3-216ENST00000503742 FAM83GA6ND36 823 aa27.44■■□□□ 1.98
UBE2D3-216ENST00000503742 ALDH1L2Q3SY69 923 aa27.44■■□□□ 1.98
UBE2D3-216ENST00000503742 CLUAP1Q96AJ1 413 aa27.44■■□□□ 1.98
UBE2D3-216ENST00000503742 MBIPQ9NS73 344 aa27.44■■□□□ 1.98
UBE2D3-216ENST00000503742 LTN1O94822 1766 aa27.43■■□□□ 1.98
UBE2D3-216ENST00000503742 C1orf167Q5SNV9 1468 aa27.43■■□□□ 1.98
UBE2D3-216ENST00000503742 KIF1AQ12756 1690 aa27.42■■□□□ 1.98
UBE2D3-216ENST00000503742 MS4A1P11836 297 aa27.41■■□□□ 1.98
UBE2D3-216ENST00000503742 BRPF1P55201 1214 aaPredicted RBP27.41■■□□□ 1.98
UBE2D3-216ENST00000503742 NCOA3Q9Y6Q9 1424 aa27.41■■□□□ 1.98
UBE2D3-216ENST00000503742 DCTN1Q14203 1278 aa27.4■■□□□ 1.98
UBE2D3-216ENST00000503742 TRPM3Q9HCF6 1732 aaPredicted RBP27.4■■□□□ 1.98
UBE2D3-216ENST00000503742 PHRF1Q9P1Y6 1649 aaKnown RBP27.39■■□□□ 1.98
UBE2D3-216ENST00000503742 FOXO3O43524 673 aa27.39■■□□□ 1.98
UBE2D3-216ENST00000503742 VAMP4O75379 141 aa27.39■■□□□ 1.98
UBE2D3-216ENST00000503742 DZIP1LQ8IYY4 767 aaKnown RBP27.39■■□□□ 1.98
UBE2D3-216ENST00000503742 TMEM94Q12767 1356 aa27.38■■□□□ 1.97
UBE2D3-216ENST00000503742 TRIM27P14373 513 aa27.38■■□□□ 1.97
UBE2D3-216ENST00000503742 KIF16BQ96L93 1317 aa27.38■■□□□ 1.97
UBE2D3-216ENST00000503742 DCCP43146 1447 aa27.37■■□□□ 1.97
UBE2D3-216ENST00000503742 MVPQ14764 893 aaKnown RBP27.37■■□□□ 1.97
UBE2D3-216ENST00000503742 ATF7IPQ6VMQ6 1270 aa27.37■■□□□ 1.97
UBE2D3-216ENST00000503742 KCNH5Q8NCM2 988 aa27.37■■□□□ 1.97
UBE2D3-216ENST00000503742 HSPA2P54652 639 aa27.37■■□□□ 1.97
UBE2D3-216ENST00000503742 IP6K1Q92551 441 aa27.37■■□□□ 1.97
UBE2D3-216ENST00000503742 NOB1Q9ULX3 412 aaKnown RBP27.37■■□□□ 1.97
UBE2D3-216ENST00000503742 SLIT3O75094 1523 aa27.36■■□□□ 1.97
UBE2D3-216ENST00000503742 MTHFSDQ2M296 383 aaKnown RBP27.36■■□□□ 1.97
UBE2D3-216ENST00000503742 TSPYL6Q8N831 410 aa27.35■■□□□ 1.97
UBE2D3-216ENST00000503742 MST1RQ04912 1400 aa27.35■■□□□ 1.97
UBE2D3-216ENST00000503742 FTSJ3Q8IY81 847 aaKnown RBP27.35■■□□□ 1.97
UBE2D3-216ENST00000503742 IGHDP01880 384 aa27.33■■□□□ 1.97
UBE2D3-216ENST00000503742 KDM4FA0A1W2PPD8 638 aa27.33■■□□□ 1.97
UBE2D3-216ENST00000503742 CHL1O00533 1208 aa27.33■■□□□ 1.97
UBE2D3-216ENST00000503742 IPO8O15397 1037 aaKnown RBP27.33■■□□□ 1.97
UBE2D3-216ENST00000503742 CRB1P82279 1406 aa27.33■■□□□ 1.97
UBE2D3-216ENST00000503742 MCM10Q7L590 875 aa27.33■■□□□ 1.97
UBE2D3-216ENST00000503742 XPCQ01831 940 aaPredicted RBP27.32■■□□□ 1.96
UBE2D3-216ENST00000503742 GAS2L2Q8NHY3 880 aa27.32■■□□□ 1.96
UBE2D3-216ENST00000503742 KRT28Q7Z3Y7 464 aa27.31■■□□□ 1.96
UBE2D3-216ENST00000503742 SKAP1Q86WV1 359 aa27.31■■□□□ 1.96
UBE2D3-216ENST00000503742 C8orf58Q8NAV2 365 aa27.31■■□□□ 1.96
UBE2D3-216ENST00000503742 ATF3P18847 181 aa27.31■■□□□ 1.96
UBE2D3-216ENST00000503742 TWISTNBQ3B726 338 aaPredicted RBP27.31■■□□□ 1.96
UBE2D3-216ENST00000503742 MRPL50Q8N5N7 158 aaKnown RBP27.31■■□□□ 1.96
UBE2D3-216ENST00000503742 LMTK3Q96Q04 1460 aa27.3■■□□□ 1.96
UBE2D3-216ENST00000503742 USP19O94966 1318 aa27.3■■□□□ 1.96
UBE2D3-216ENST00000503742 PCDHB15Q9Y5E8 787 aa27.29■■□□□ 1.96
UBE2D3-216ENST00000503742 GCP02774 474 aa27.28■■□□□ 1.96
UBE2D3-216ENST00000503742 LTV1Q96GA3 475 aaPredicted RBP27.28■■□□□ 1.96
UBE2D3-216ENST00000503742 ALS2Q96Q42 1657 aa27.28■■□□□ 1.96
UBE2D3-216ENST00000503742 STRCQ7RTU9 1775 aa27.28■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms