RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 LTKP29376 864 aa20.94■□□□□ 0.94
CCDC88B-210ENST00000494566 NFE2L2Q16236 605 aa20.94■□□□□ 0.94
CCDC88B-210ENST00000494566 PNNQ9H307 717 aaKnown RBP20.94■□□□□ 0.94
CCDC88B-210ENST00000494566 IL16Q14005 1332 aa20.94■□□□□ 0.94
CCDC88B-210ENST00000494566 CT47B1P0C2W7 299 aaPredicted RBP20.94■□□□□ 0.94
CCDC88B-210ENST00000494566 AEBP1Q8IUX7 1158 aa20.92■□□□□ 0.94
CCDC88B-210ENST00000494566 C1orf115Q9H7X2 142 aa20.92■□□□□ 0.94
CCDC88B-210ENST00000494566 DDX19BQ9UMR2 479 aa20.92■□□□□ 0.94
CCDC88B-210ENST00000494566 VIRMAQ69YN4 1812 aaKnown RBP20.92■□□□□ 0.94
CCDC88B-210ENST00000494566 TMEM2Q9UHN6 1383 aa20.91■□□□□ 0.94
CCDC88B-210ENST00000494566 TBC1D2Q9BYX2 928 aa20.9■□□□□ 0.94
CCDC88B-210ENST00000494566 MBIPQ9NS73 344 aa20.9■□□□□ 0.94
CCDC88B-210ENST00000494566 BECN1Q14457 450 aa20.89■□□□□ 0.94
CCDC88B-210ENST00000494566 UPF2Q9HAU5 1272 aaKnown RBP20.89■□□□□ 0.94
CCDC88B-210ENST00000494566 AAMPQ13685 434 aa20.89■□□□□ 0.93
CCDC88B-210ENST00000494566 FOXD4L1Q9NU39 408 aa20.89■□□□□ 0.93
CCDC88B-210ENST00000494566 KIF16BQ96L93 1317 aa20.88■□□□□ 0.93
CCDC88B-210ENST00000494566 ZBTB40Q9NUA8 1239 aa20.88■□□□□ 0.93
CCDC88B-210ENST00000494566 CDC42BPGQ6DT37 1551 aa20.87■□□□□ 0.93
CCDC88B-210ENST00000494566 ACEP12821 1306 aa20.87■□□□□ 0.93
CCDC88B-210ENST00000494566 VAMP4O75379 141 aa20.87■□□□□ 0.93
CCDC88B-210ENST00000494566 HDGFP51858 240 aaKnown RBP20.87■□□□□ 0.93
CCDC88B-210ENST00000494566 C8orf58Q8NAV2 365 aa20.87■□□□□ 0.93
CCDC88B-210ENST00000494566 KRT24Q2M2I5 525 aa20.86■□□□□ 0.93
CCDC88B-210ENST00000494566 ADAMTS13Q76LX8 1427 aa20.85■□□□□ 0.93
CCDC88B-210ENST00000494566 IPO8O15397 1037 aaKnown RBP20.85■□□□□ 0.93
CCDC88B-210ENST00000494566 SULT6B1Q6IMI4 303 aa20.85■□□□□ 0.93
CCDC88B-210ENST00000494566 LNPKQ9C0E8 428 aa20.84■□□□□ 0.93
CCDC88B-210ENST00000494566 UBR1Q8IWV7 1749 aa20.84■□□□□ 0.93
CCDC88B-210ENST00000494566 CDK12Q9NYV4 1490 aaPredicted RBP20.84■□□□□ 0.93
CCDC88B-210ENST00000494566 EIF4A2Q14240 407 aaKnown RBP20.84■□□□□ 0.93
CCDC88B-210ENST00000494566 HSP90AB2PQ58FF8 381 aa20.84■□□□□ 0.93
CCDC88B-210ENST00000494566 TTC21BQ7Z4L5 1316 aa20.83■□□□□ 0.93
CCDC88B-210ENST00000494566 DLG5Q8TDM6 1919 aa20.83■□□□□ 0.93
CCDC88B-210ENST00000494566 ALDH1L2Q3SY69 923 aa20.83■□□□□ 0.93
CCDC88B-210ENST00000494566 MRPL50Q8N5N7 158 aaKnown RBP20.83■□□□□ 0.93
CCDC88B-210ENST00000494566 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.83■□□□□ 0.92
CCDC88B-210ENST00000494566 HDAC1Q13547 482 aaPredicted RBP20.83■□□□□ 0.92
CCDC88B-210ENST00000494566 TWISTNBQ3B726 338 aaPredicted RBP20.83■□□□□ 0.92
CCDC88B-210ENST00000494566 GNAI1P63096 354 aa20.82■□□□□ 0.92
CCDC88B-210ENST00000494566 MON2Q7Z3U7 1717 aa20.82■□□□□ 0.92
CCDC88B-210ENST00000494566 TECPR2O15040 1411 aa20.82■□□□□ 0.92
CCDC88B-210ENST00000494566 MCM10Q7L590 875 aa20.81■□□□□ 0.92
CCDC88B-210ENST00000494566 PANK2Q9BZ23 570 aa20.81■□□□□ 0.92
CCDC88B-210ENST00000494566 IFT57Q9NWB7 429 aa20.81■□□□□ 0.92
CCDC88B-210ENST00000494566 AATKQ6ZMQ8 1374 aa20.81■□□□□ 0.92
CCDC88B-210ENST00000494566 ITSN1Q15811 1721 aa20.81■□□□□ 0.92
CCDC88B-210ENST00000494566 ZNF692Q9BU19 519 aaPredicted RBP20.81■□□□□ 0.92
CCDC88B-210ENST00000494566 PTPRUQ92729 1446 aa20.8■□□□□ 0.92
CCDC88B-210ENST00000494566 C3P01024 1663 aa20.8■□□□□ 0.92
CCDC88B-210ENST00000494566 ZNF853P0CG23 659 aa20.79■□□□□ 0.92
CCDC88B-210ENST00000494566 TBC1D32Q96NH3 1257 aa20.79■□□□□ 0.92
CCDC88B-210ENST00000494566 SMC5Q8IY18 1101 aa20.79■□□□□ 0.92
CCDC88B-210ENST00000494566 AMOTL2Q9Y2J4 779 aa20.79■□□□□ 0.92
CCDC88B-210ENST00000494566 KNDC1Q76NI1 1749 aa20.79■□□□□ 0.92
CCDC88B-210ENST00000494566 AKAP12Q02952 1782 aa20.79■□□□□ 0.92
CCDC88B-210ENST00000494566 CFAP44Q96MT7 982 aa20.78■□□□□ 0.92
CCDC88B-210ENST00000494566 ZBTB7BO15156 539 aaPredicted RBP20.77■□□□□ 0.92
CCDC88B-210ENST00000494566 MIS18AQ9NYP9 233 aa20.77■□□□□ 0.92
CCDC88B-210ENST00000494566 SIRT1Q96EB6 747 aa20.77■□□□□ 0.92
CCDC88B-210ENST00000494566 CALD1Q05682 793 aaKnown RBP20.77■□□□□ 0.91
CCDC88B-210ENST00000494566 NUTM2GQ5VZR2 741 aa20.77■□□□□ 0.91
CCDC88B-210ENST00000494566 C22orf23Q9BZE7 217 aa20.77■□□□□ 0.91
CCDC88B-210ENST00000494566 FOXO3O43524 673 aa20.75■□□□□ 0.91
CCDC88B-210ENST00000494566 ANKRD45Q5TZF3 282 aa20.75■□□□□ 0.91
CCDC88B-210ENST00000494566 ANTXR1Q9H6X2 564 aa20.75■□□□□ 0.91
CCDC88B-210ENST00000494566 RRAGDQ9NQL2 400 aaPredicted RBP20.75■□□□□ 0.91
CCDC88B-210ENST00000494566 EID1Q9Y6B2 187 aa20.74■□□□□ 0.91
CCDC88B-210ENST00000494566 PLEKHG1Q9ULL1 1385 aa20.74■□□□□ 0.91
CCDC88B-210ENST00000494566 NUCB1Q02818 461 aa20.73■□□□□ 0.91
CCDC88B-210ENST00000494566 SIRT2Q8IXJ6 389 aa20.73■□□□□ 0.91
CCDC88B-210ENST00000494566 USP6P35125 1406 aa20.73■□□□□ 0.91
CCDC88B-210ENST00000494566 LMOD3Q0VAK6 560 aa20.73■□□□□ 0.91
CCDC88B-210ENST00000494566 CHD1LQ86WJ1 897 aa20.72■□□□□ 0.91
CCDC88B-210ENST00000494566 NGDNQ8NEJ9 315 aaKnown RBP20.72■□□□□ 0.91
CCDC88B-210ENST00000494566 RBM33Q96EV2 1170 aaKnown RBP20.72■□□□□ 0.91
CCDC88B-210ENST00000494566 OVOS2A0A0J9YW53 1432 aa20.71■□□□□ 0.91
CCDC88B-210ENST00000494566 OVOS2Q6IE36 1432 aa20.71■□□□□ 0.91
CCDC88B-210ENST00000494566 PLEKHG3A1L390 1219 aa20.71■□□□□ 0.91
CCDC88B-210ENST00000494566 PEAK1Q9H792 1746 aa20.71■□□□□ 0.91
CCDC88B-210ENST00000494566 MAP3K19Q56UN5 1328 aa20.7■□□□□ 0.9
CCDC88B-210ENST00000494566 ZNF428Q96B54 188 aa20.7■□□□□ 0.9
CCDC88B-210ENST00000494566 PTCH1Q13635 1447 aa20.7■□□□□ 0.9
CCDC88B-210ENST00000494566 BRPF1P55201 1214 aaPredicted RBP20.7■□□□□ 0.9
CCDC88B-210ENST00000494566 ABCC4O15439 1325 aa20.69■□□□□ 0.9
CCDC88B-210ENST00000494566 RGPD8O14715 1765 aaPredicted RBP20.69■□□□□ 0.9
CCDC88B-210ENST00000494566 RIMS1Q86UR5 1692 aaKnown RBP20.68■□□□□ 0.9
CCDC88B-210ENST00000494566 NRKQ7Z2Y5 1582 aa20.68■□□□□ 0.9
CCDC88B-210ENST00000494566 APBB1O00213 710 aa20.67■□□□□ 0.9
CCDC88B-210ENST00000494566 XRCC6P12956 609 aaKnown RBP eCLIP20.67■□□□□ 0.9
CCDC88B-210ENST00000494566 MCM4P33991 863 aa20.67■□□□□ 0.9
CCDC88B-210ENST00000494566 ARHGAP45Q92619 1136 aa20.67■□□□□ 0.9
CCDC88B-210ENST00000494566 RBM42Q9BTD8 480 aaKnown RBP20.67■□□□□ 0.9
CCDC88B-210ENST00000494566 PLEKHG5O94827 1062 aa20.66■□□□□ 0.9
CCDC88B-210ENST00000494566 MTHFSDQ2M296 383 aaKnown RBP20.65■□□□□ 0.9
CCDC88B-210ENST00000494566 TOPAZ1Q8N9V7 1692 aa20.65■□□□□ 0.9
CCDC88B-210ENST00000494566 HSP90AA1P07900 732 aaKnown RBP20.65■□□□□ 0.9
CCDC88B-210ENST00000494566 AMPHP49418 695 aa20.65■□□□□ 0.9
CCDC88B-210ENST00000494566 LTV1Q96GA3 475 aaPredicted RBP20.65■□□□□ 0.9
CCDC88B-210ENST00000494566 GOLGA6L3A6NEY3 463 aa20.64■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms