RNA–Protein interactions for RNA: ENST00000493379.1

VPS52-219, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 786 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-219ENST00000493379 ABCC11Q96J66 1382 aa9.74□□□□□ -0.85
VPS52-219ENST00000493379 L3MBTL2Q969R5 705 aa9.73□□□□□ -0.85
VPS52-219ENST00000493379 SOS2Q07890 1332 aaPredicted RBP9.73□□□□□ -0.85
VPS52-219ENST00000493379 IFT172Q9UG01 1749 aa9.73□□□□□ -0.85
VPS52-219ENST00000493379 TECPR2O15040 1411 aa9.73□□□□□ -0.85
VPS52-219ENST00000493379 DCCP43146 1447 aa9.73□□□□□ -0.85
VPS52-219ENST00000493379 FHDC1Q9C0D6 1143 aaPredicted RBP9.72□□□□□ -0.85
VPS52-219ENST00000493379 PDGFDQ9GZP0 370 aaPredicted RBP9.72□□□□□ -0.85
VPS52-219ENST00000493379 CCDC9Q9Y3X0 531 aaKnown RBP9.72□□□□□ -0.85
VPS52-219ENST00000493379 ONECUT3O60422 494 aaPredicted RBP9.71□□□□□ -0.86
VPS52-219ENST00000493379 CFAP70Q5T0N1 1121 aa9.71□□□□□ -0.86
VPS52-219ENST00000493379 SYT17Q9BSW7 474 aa9.71□□□□□ -0.86
VPS52-219ENST00000493379 LRPPRCP42704 1394 aaKnown RBP9.71□□□□□ -0.86
VPS52-219ENST00000493379 LAMC1P11047 1609 aa9.71□□□□□ -0.86
VPS52-219ENST00000493379 TRIM37O94972 964 aa9.7□□□□□ -0.86
VPS52-219ENST00000493379 ORAI2Q96SN7 254 aa9.7□□□□□ -0.86
VPS52-219ENST00000493379 GOLGB1Q14789 3259 aaKnown RBP9.7□□□□□ -0.86
VPS52-219ENST00000493379 FAM83GA6ND36 823 aa9.69□□□□□ -0.86
VPS52-219ENST00000493379 DNAJC5GQ8N7S2 189 aa9.69□□□□□ -0.86
VPS52-219ENST00000493379 MS4A4AQ96JQ5 239 aa9.69□□□□□ -0.86
VPS52-219ENST00000493379 CASZ1Q86V15 1759 aa9.68□□□□□ -0.86
VPS52-219ENST00000493379 ADGRB1O14514 1584 aa9.68□□□□□ -0.86
VPS52-219ENST00000493379 ADGRL3Q9HAR2 1447 aa9.68□□□□□ -0.86
VPS52-219ENST00000493379 ZBTB7AO95365 584 aa9.68□□□□□ -0.86
VPS52-219ENST00000493379 APBA3O96018 575 aa9.68□□□□□ -0.86
VPS52-219ENST00000493379 PTGER2P43116 358 aa9.68□□□□□ -0.86
VPS52-219ENST00000493379 VPS72Q15906 364 aa9.68□□□□□ -0.86
VPS52-219ENST00000493379 FAM98CQ17RN3 349 aaKnown RBP9.68□□□□□ -0.86
VPS52-219ENST00000493379 NBPF8Q3BBV2 869 aa9.68□□□□□ -0.86
VPS52-219ENST00000493379 NBPF14Q5TI25 921 aa9.68□□□□□ -0.86
VPS52-219ENST00000493379 ARHGEF1Q92888 912 aaKnown RBP9.68□□□□□ -0.86
VPS52-219ENST00000493379 TMEM106CQ9BVX2 250 aa9.68□□□□□ -0.86
VPS52-219ENST00000493379 XRN1Q8IZH2 1706 aaKnown RBP9.68□□□□□ -0.86
VPS52-219ENST00000493379 ADGRB2O60241 1585 aa9.67□□□□□ -0.86
VPS52-219ENST00000493379 C1orf167Q5SNV9 1468 aa9.67□□□□□ -0.86
VPS52-219ENST00000493379 ROBO2Q9HCK4 1378 aa9.67□□□□□ -0.86
VPS52-219ENST00000493379 NEUROD1Q13562 356 aa9.67□□□□□ -0.86
VPS52-219ENST00000493379 E2F4Q16254 413 aa9.67□□□□□ -0.86
VPS52-219ENST00000493379 TMEM132EQ6IEE7 984 aa9.67□□□□□ -0.86
VPS52-219ENST00000493379 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.67□□□□□ -0.86
VPS52-219ENST00000493379 YTHDC2Q9H6S0 1430 aaKnown RBP9.66□□□□□ -0.86
VPS52-219ENST00000493379 NALCNQ8IZF0 1738 aa9.66□□□□□ -0.86
VPS52-219ENST00000493379 XPCQ01831 940 aaPredicted RBP9.66□□□□□ -0.86
VPS52-219ENST00000493379 TRPC6Q9Y210 931 aa9.66□□□□□ -0.86
VPS52-219ENST00000493379 PCNTO95613 3336 aa9.66□□□□□ -0.86
VPS52-219ENST00000493379 GPRASP1Q5JY77 1395 aa9.65□□□□□ -0.86
VPS52-219ENST00000493379 PLCH1Q4KWH8 1693 aa9.65□□□□□ -0.86
VPS52-219ENST00000493379 C19orf67A6NJJ6 358 aa9.65□□□□□ -0.86
VPS52-219ENST00000493379 GOLGA2Q08379 1002 aa9.65□□□□□ -0.86
VPS52-219ENST00000493379 GPR162Q16538 588 aa9.65□□□□□ -0.86
VPS52-219ENST00000493379 NBPF1Q3BBV0 1214 aa9.65□□□□□ -0.86
VPS52-219ENST00000493379 MS4A3Q96HJ5 214 aa9.65□□□□□ -0.86
VPS52-219ENST00000493379 WWC3Q9ULE0 1092 aa9.65□□□□□ -0.86
VPS52-219ENST00000493379 DLC1Q96QB1 1528 aa9.65□□□□□ -0.86
VPS52-219ENST00000493379 LMOD2Q6P5Q4 547 aa9.64□□□□□ -0.87
VPS52-219ENST00000493379 ATP10DQ9P241 1426 aa9.64□□□□□ -0.87
VPS52-219ENST00000493379 KIAA1210Q9ULL0 1709 aa9.63□□□□□ -0.87
VPS52-219ENST00000493379 PARD3Q8TEW0 1356 aa9.63□□□□□ -0.87
VPS52-219ENST00000493379 TONSLQ96HA7 1378 aa9.63□□□□□ -0.87
VPS52-219ENST00000493379 PDE4AP27815 886 aa9.62□□□□□ -0.87
VPS52-219ENST00000493379 WAPLQ7Z5K2 1190 aa9.62□□□□□ -0.87
VPS52-219ENST00000493379 PELP1Q8IZL8 1130 aaKnown RBP9.62□□□□□ -0.87
VPS52-219ENST00000493379 ZNF526Q8TF50 670 aaPredicted RBP9.62□□□□□ -0.87
VPS52-219ENST00000493379 ANO8Q9HCE9 1232 aaPredicted RBP9.62□□□□□ -0.87
VPS52-219ENST00000493379 USP32Q8NFA0 1604 aa9.62□□□□□ -0.87
VPS52-219ENST00000493379 TNS2Q63HR2 1409 aa9.62□□□□□ -0.87
VPS52-219ENST00000493379 MKRN3Q13064 507 aaKnown RBP9.61□□□□□ -0.87
VPS52-219ENST00000493379 MFSD10Q14728 455 aa9.61□□□□□ -0.87
VPS52-219ENST00000493379 LARP6Q9BRS8 491 aaKnown RBP9.61□□□□□ -0.87
VPS52-219ENST00000493379 CRISPLD2Q9H0B8 497 aa9.61□□□□□ -0.87
VPS52-219ENST00000493379 PXDNQ92626 1479 aa9.6□□□□□ -0.87
VPS52-219ENST00000493379 KNDC1Q76NI1 1749 aa9.6□□□□□ -0.87
VPS52-219ENST00000493379 APLP1P51693 650 aa9.6□□□□□ -0.87
VPS52-219ENST00000493379 HTRA3P83110 453 aa9.6□□□□□ -0.87
VPS52-219ENST00000493379 CCER1Q8TC90 406 aaPredicted RBP9.6□□□□□ -0.87
VPS52-219ENST00000493379 PRAM1Q96QH2 718 aa9.6□□□□□ -0.87
VPS52-219ENST00000493379 GPBP1L1Q9HC44 474 aaPredicted RBP9.6□□□□□ -0.87
VPS52-219ENST00000493379 STK26Q9P289 416 aa9.6□□□□□ -0.87
VPS52-219ENST00000493379 PLEKHH1Q9ULM0 1364 aa9.6□□□□□ -0.87
VPS52-219ENST00000493379 NWD2Q9ULI1 1742 aa9.59□□□□□ -0.87
VPS52-219ENST00000493379 TULP1O00294 542 aaPredicted RBP9.59□□□□□ -0.87
VPS52-219ENST00000493379 TIE1P35590 1138 aa9.59□□□□□ -0.87
VPS52-219ENST00000493379 FAM161AQ3B820 660 aa9.59□□□□□ -0.87
VPS52-219ENST00000493379 TRAK1Q9UPV9 953 aa9.59□□□□□ -0.87
VPS52-219ENST00000493379 NRAPQ86VF7 1730 aa9.57□□□□□ -0.88
VPS52-219ENST00000493379 TTLL13PA6NNM8 815 aa9.57□□□□□ -0.88
VPS52-219ENST00000493379 SEMA3EO15041 775 aa9.57□□□□□ -0.88
VPS52-219ENST00000493379 CABLES1Q8TDN4 633 aa9.57□□□□□ -0.88
VPS52-219ENST00000493379 THSD7AQ9UPZ6 1657 aa9.57□□□□□ -0.88
VPS52-219ENST00000493379 ROCK2O75116 1388 aaKnown RBP9.56□□□□□ -0.88
VPS52-219ENST00000493379 SBNO2Q9Y2G9 1366 aa9.56□□□□□ -0.88
VPS52-219ENST00000493379 TESPA1A2RU30 521 aaPredicted RBP9.56□□□□□ -0.88
VPS52-219ENST00000493379 DDX27Q96GQ7 796 aaKnown RBP9.56□□□□□ -0.88
VPS52-219ENST00000493379 PUS7Q96PZ0 661 aaKnown RBP9.56□□□□□ -0.88
VPS52-219ENST00000493379 POGKQ9P215 609 aa9.56□□□□□ -0.88
VPS52-219ENST00000493379 WDR90Q96KV7 1748 aa9.56□□□□□ -0.88
VPS52-219ENST00000493379 TRPM1Q7Z4N2 1603 aa9.56□□□□□ -0.88
VPS52-219ENST00000493379 CDC42BPGQ6DT37 1551 aa9.55□□□□□ -0.88
VPS52-219ENST00000493379 WASLO00401 505 aaPredicted RBP9.55□□□□□ -0.88
VPS52-219ENST00000493379 ARIH1Q9Y4X5 557 aaPredicted RBP9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms