RNA–Protein interactions for RNA: ENST00000490278.1

CD46-216, Transcript of CD46 molecule, humanhuman

TSL 2

Gene CD46, Length 747 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD46-216ENST00000490278 TFIP11Q9UBB9 837 aaKnown RBP7.54□□□□□ -1.2
CD46-216ENST00000490278 PIK3CDO00329 1044 aa7.53□□□□□ -1.2
CD46-216ENST00000490278 ATP9BO43861 1147 aa7.53□□□□□ -1.2
CD46-216ENST00000490278 CFAP70Q5T0N1 1121 aa7.53□□□□□ -1.2
CD46-216ENST00000490278 WNT7AO00755 349 aa7.52□□□□□ -1.21
CD46-216ENST00000490278 GIGYF1O75420 1035 aaPredicted RBP7.52□□□□□ -1.21
CD46-216ENST00000490278 SKIP12755 728 aa7.52□□□□□ -1.21
CD46-216ENST00000490278 ZNF598Q86UK7 904 aaKnown RBP7.52□□□□□ -1.21
CD46-216ENST00000490278 RNF135Q8IUD6 432 aa7.52□□□□□ -1.21
CD46-216ENST00000490278 PHTF2Q8N3S3 785 aa7.52□□□□□ -1.21
CD46-216ENST00000490278 MAP4K5Q9Y4K4 846 aa7.52□□□□□ -1.21
CD46-216ENST00000490278 MAFBQ9Y5Q3 323 aaPredicted RBP7.52□□□□□ -1.21
CD46-216ENST00000490278 RFX1P22670 979 aa7.51□□□□□ -1.21
CD46-216ENST00000490278 LMOD1P29536 600 aaPredicted RBP7.51□□□□□ -1.21
CD46-216ENST00000490278 ZNF697Q5TEC3 545 aa7.51□□□□□ -1.21
CD46-216ENST00000490278 RNF20Q5VTR2 975 aa7.51□□□□□ -1.21
CD46-216ENST00000490278 ESPNB1AK53 854 aa7.5□□□□□ -1.21
CD46-216ENST00000490278 PPP1R15AO75807 674 aaPredicted RBP7.5□□□□□ -1.21
CD46-216ENST00000490278 ARID5BQ14865 1188 aa7.5□□□□□ -1.21
CD46-216ENST00000490278 VASH1Q7L8A9 365 aaPredicted RBP7.5□□□□□ -1.21
CD46-216ENST00000490278 HOMEZQ8IX15 550 aa7.5□□□□□ -1.21
CD46-216ENST00000490278 SEPT12Q8IYM1 358 aa7.5□□□□□ -1.21
CD46-216ENST00000490278 MPNDQ8N594 471 aa7.5□□□□□ -1.21
CD46-216ENST00000490278 PLPP7Q8NBV4 271 aa7.5□□□□□ -1.21
CD46-216ENST00000490278 MRGPRX2Q96LB1 330 aa7.5□□□□□ -1.21
CD46-216ENST00000490278 CDK15Q96Q40 435 aa7.5□□□□□ -1.21
CD46-216ENST00000490278 KCTD15Q96SI1 283 aaPredicted RBP7.5□□□□□ -1.21
CD46-216ENST00000490278 PDZRN3Q9UPQ7 1066 aa7.5□□□□□ -1.21
CD46-216ENST00000490278 USP17L5A8MUK1 530 aa7.49□□□□□ -1.21
CD46-216ENST00000490278 SIAH2O43255 324 aa7.49□□□□□ -1.21
CD46-216ENST00000490278 MAP7D1Q3KQU3 841 aa7.49□□□□□ -1.21
CD46-216ENST00000490278 CCDC125Q86Z20 511 aa7.49□□□□□ -1.21
CD46-216ENST00000490278 PBXIP1Q96AQ6 731 aa7.49□□□□□ -1.21
CD46-216ENST00000490278 CHIC2Q9UKJ5 165 aa7.49□□□□□ -1.21
CD46-216ENST00000490278 TLL2Q9Y6L7 1015 aa7.49□□□□□ -1.21
CD46-216ENST00000490278 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.48□□□□□ -1.21
CD46-216ENST00000490278 USP17L3A6NCW0 530 aa7.48□□□□□ -1.21
CD46-216ENST00000490278 USP17L4A6NCW7 530 aa7.48□□□□□ -1.21
CD46-216ENST00000490278 LZTS3O60299 673 aaPredicted RBP7.48□□□□□ -1.21
CD46-216ENST00000490278 USP17L2Q6R6M4 530 aa7.48□□□□□ -1.21
CD46-216ENST00000490278 USP17L1Q7RTZ2 530 aa7.48□□□□□ -1.21
CD46-216ENST00000490278 PLEKHM2Q8IWE5 1019 aa7.48□□□□□ -1.21
CD46-216ENST00000490278 SRPK2P78362 688 aaKnown RBP7.47□□□□□ -1.21
CD46-216ENST00000490278 FOXC1Q12948 553 aa7.47□□□□□ -1.21
CD46-216ENST00000490278 TSGA10IPQ3SY00 556 aa7.47□□□□□ -1.21
CD46-216ENST00000490278 INTS6LQ5JSJ4 861 aaKnown RBP7.47□□□□□ -1.21
CD46-216ENST00000490278 DEPDC4Q8N2C3 294 aa7.47□□□□□ -1.21
CD46-216ENST00000490278 CCDC85AQ96PX6 553 aaPredicted RBP7.47□□□□□ -1.21
CD46-216ENST00000490278 DOLKQ9UPQ8 538 aa7.47□□□□□ -1.21
CD46-216ENST00000490278 ADH1CP00326 375 aa7.46□□□□□ -1.22
CD46-216ENST00000490278 FSHRP23945 695 aa7.46□□□□□ -1.22
CD46-216ENST00000490278 GRM5P41594 1212 aa7.46□□□□□ -1.22
CD46-216ENST00000490278 RAB15P59190 212 aa7.46□□□□□ -1.22
CD46-216ENST00000490278 NCOA4Q13772 614 aa7.46□□□□□ -1.22
CD46-216ENST00000490278 PKD2L1Q9P0L9 805 aa7.46□□□□□ -1.22
CD46-216ENST00000490278 ACIN1Q9UKV3 1341 aaKnown RBP7.46□□□□□ -1.22
CD46-216ENST00000490278 EML3Q32P44 896 aa7.45□□□□□ -1.22
CD46-216ENST00000490278 VRTNQ9H8Y1 702 aa7.45□□□□□ -1.22
CD46-216ENST00000490278 PCDHB11Q9Y5F2 797 aa7.45□□□□□ -1.22
CD46-216ENST00000490278 DHX9Q08211 1270 aaKnown RBP7.44□□□□□ -1.22
CD46-216ENST00000490278 NR5A1Q13285 461 aa7.44□□□□□ -1.22
CD46-216ENST00000490278 OXLD1Q5BKU9 147 aa7.44□□□□□ -1.22
CD46-216ENST00000490278 KANK4Q5T7N3 995 aaPredicted RBP7.44□□□□□ -1.22
CD46-216ENST00000490278 SNIP1Q8TAD8 396 aaKnown RBP7.44□□□□□ -1.22
CD46-216ENST00000490278 MKRN1Q9UHC7 482 aaKnown RBP7.44□□□□□ -1.22
CD46-216ENST00000490278 ATP5J2-PTCD1G3V325 749 aa7.43□□□□□ -1.22
CD46-216ENST00000490278 ERVH48-1M5A8F1 160 aa7.43□□□□□ -1.22
CD46-216ENST00000490278 GDF9O60383 454 aa7.43□□□□□ -1.22
CD46-216ENST00000490278 ALDH1A1P00352 501 aa7.43□□□□□ -1.22
CD46-216ENST00000490278 USP4Q13107 963 aa7.43□□□□□ -1.22
CD46-216ENST00000490278 CDCA8Q53HL2 280 aa7.43□□□□□ -1.22
CD46-216ENST00000490278 TRIM52Q96A61 297 aa7.43□□□□□ -1.22
CD46-216ENST00000490278 CDCA7Q9BWT1 371 aaPredicted RBP7.43□□□□□ -1.22
CD46-216ENST00000490278 TTC24A2A3L6 582 aaPredicted RBP7.42□□□□□ -1.22
CD46-216ENST00000490278 CCDC116Q8IYX3 515 aa7.42□□□□□ -1.22
CD46-216ENST00000490278 SIRT1Q96EB6 747 aa7.42□□□□□ -1.22
CD46-216ENST00000490278 NOD1Q9Y239 953 aa7.42□□□□□ -1.22
CD46-216ENST00000490278 WASF2Q9Y6W5 498 aa7.42□□□□□ -1.22
CD46-216ENST00000490278 TNFRSF10AO00220 468 aa7.41□□□□□ -1.22
CD46-216ENST00000490278 ATG7O95352 703 aa7.41□□□□□ -1.22
CD46-216ENST00000490278 NR3C2P08235 984 aa7.41□□□□□ -1.22
CD46-216ENST00000490278 TRIM50Q86XT4 487 aa7.41□□□□□ -1.22
CD46-216ENST00000490278 CYP4X1Q8N118 509 aa7.41□□□□□ -1.22
CD46-216ENST00000490278 MYCP01106 439 aaPredicted RBP7.4□□□□□ -1.22
CD46-216ENST00000490278 RASA1P20936 1047 aa7.4□□□□□ -1.22
CD46-216ENST00000490278 ATP1A2P50993 1020 aa7.4□□□□□ -1.22
CD46-216ENST00000490278 PRR20EP86478 221 aa7.4□□□□□ -1.22
CD46-216ENST00000490278 PRR20CP86479 221 aa7.4□□□□□ -1.22
CD46-216ENST00000490278 PRR20DP86480 221 aa7.4□□□□□ -1.22
CD46-216ENST00000490278 PRR20BP86481 221 aa7.4□□□□□ -1.22
CD46-216ENST00000490278 PRR20AP86496 221 aa7.4□□□□□ -1.22
CD46-216ENST00000490278 NNTQ13423 1086 aa7.4□□□□□ -1.22
CD46-216ENST00000490278 PPP1R26Q5T8A7 1209 aaPredicted RBP7.4□□□□□ -1.22
CD46-216ENST00000490278 LARP1Q6PKG0 1096 aaKnown RBP7.4□□□□□ -1.22
CD46-216ENST00000490278 TRIM67Q6ZTA4 783 aa7.4□□□□□ -1.22
CD46-216ENST00000490278 ESF1Q9H501 851 aaKnown RBP7.4□□□□□ -1.22
CD46-216ENST00000490278 TMPRSS4Q9NRS4 437 aa7.4□□□□□ -1.22
CD46-216ENST00000490278 TOR4AQ9NXH8 423 aa7.4□□□□□ -1.22
CD46-216ENST00000490278 FAM196BA6NMK8 535 aa7.39□□□□□ -1.23
CD46-216ENST00000490278 ERVK-9P63128 1117 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms