RNA–Protein interactions for RNA: ENST00000490193.5

USP39-216, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 1,028 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-216ENST00000490193 ACEP12821 1306 aa12.03□□□□□ -0.48
USP39-216ENST00000490193 PDE3BQ13370 1112 aa12.02□□□□□ -0.49
USP39-216ENST00000490193 NBPF8Q3BBV2 869 aa12.02□□□□□ -0.49
USP39-216ENST00000490193 CDK19Q9BWU1 502 aa12.02□□□□□ -0.49
USP39-216ENST00000490193 CCDC61Q9Y6R9 512 aa12.02□□□□□ -0.49
USP39-216ENST00000490193 COL5A2P05997 1499 aaPredicted RBP12.02□□□□□ -0.49
USP39-216ENST00000490193 C11orf95C9JLR9 678 aaPredicted RBP12.01□□□□□ -0.49
USP39-216ENST00000490193 LARP1Q6PKG0 1096 aaKnown RBP12.01□□□□□ -0.49
USP39-216ENST00000490193 TCP11L2Q8N4U5 519 aa12.01□□□□□ -0.49
USP39-216ENST00000490193 WNK3Q9BYP7 1800 aa12.01□□□□□ -0.49
USP39-216ENST00000490193 BRD4O60885 1362 aaPredicted RBP12.01□□□□□ -0.49
USP39-216ENST00000490193 EVA1CP58658 441 aa12□□□□□ -0.49
USP39-216ENST00000490193 NBPF14Q5TI25 921 aa12□□□□□ -0.49
USP39-216ENST00000490193 NUTM2GQ5VZR2 741 aa12□□□□□ -0.49
USP39-216ENST00000490193 USP35Q9P2H5 1018 aa12□□□□□ -0.49
USP39-216ENST00000490193 LRRC37A3O60309 1634 aa12□□□□□ -0.49
USP39-216ENST00000490193 ABTB2Q8N961 1025 aa11.99□□□□□ -0.49
USP39-216ENST00000490193 OVOS2A0A0G2JMS6 1433 aa11.99□□□□□ -0.49
USP39-216ENST00000490193 OVOS2A0A0J9YW53 1432 aa11.99□□□□□ -0.49
USP39-216ENST00000490193 CRB1P82279 1406 aa11.99□□□□□ -0.49
USP39-216ENST00000490193 OVOS2Q6IE36 1432 aa11.99□□□□□ -0.49
USP39-216ENST00000490193 SLIT3O75094 1523 aa11.99□□□□□ -0.49
USP39-216ENST00000490193 CASZ1Q86V15 1759 aa11.99□□□□□ -0.49
USP39-216ENST00000490193 COL18A1P39060 1754 aa11.98□□□□□ -0.49
USP39-216ENST00000490193 NINLQ9Y2I6 1382 aa11.98□□□□□ -0.49
USP39-216ENST00000490193 GCP02774 474 aa11.98□□□□□ -0.49
USP39-216ENST00000490193 NLRP13Q86W25 1043 aa11.98□□□□□ -0.49
USP39-216ENST00000490193 PPIP5K1Q6PFW1 1433 aa11.97□□□□□ -0.49
USP39-216ENST00000490193 SPON1Q9HCB6 807 aa11.97□□□□□ -0.49
USP39-216ENST00000490193 QRICH2Q9H0J4 1663 aa11.97□□□□□ -0.49
USP39-216ENST00000490193 AATKQ6ZMQ8 1374 aa11.96□□□□□ -0.49
USP39-216ENST00000490193 PLSCR1O15162 318 aa11.96□□□□□ -0.49
USP39-216ENST00000490193 KCNQ2O43526 872 aa11.96□□□□□ -0.49
USP39-216ENST00000490193 AKAP12Q02952 1782 aa11.96□□□□□ -0.49
USP39-216ENST00000490193 PIK3C2AO00443 1686 aa11.96□□□□□ -0.5
USP39-216ENST00000490193 BCL9O00512 1426 aa11.95□□□□□ -0.5
USP39-216ENST00000490193 USP6P35125 1406 aa11.94□□□□□ -0.5
USP39-216ENST00000490193 SPDYE1Q8NFV5 336 aaPredicted RBP11.93□□□□□ -0.5
USP39-216ENST00000490193 CENPJQ9HC77 1338 aaPredicted RBP11.92□□□□□ -0.5
USP39-216ENST00000490193 PRKAR2AP13861 404 aaKnown RBP11.92□□□□□ -0.5
USP39-216ENST00000490193 SRPK2P78362 688 aaKnown RBP11.92□□□□□ -0.5
USP39-216ENST00000490193 PPP1R1BQ9UD71 204 aaPredicted RBP11.92□□□□□ -0.5
USP39-216ENST00000490193 RGPD5Q99666 1765 aa11.92□□□□□ -0.5
USP39-216ENST00000490193 TRPM1Q7Z4N2 1603 aa11.91□□□□□ -0.5
USP39-216ENST00000490193 C19orf67A6NJJ6 358 aa11.91□□□□□ -0.5
USP39-216ENST00000490193 DDB1Q16531 1140 aa11.91□□□□□ -0.5
USP39-216ENST00000490193 NBPF1Q3BBV0 1214 aa11.91□□□□□ -0.5
USP39-216ENST00000490193 IFFO2Q5TF58 517 aa11.91□□□□□ -0.5
USP39-216ENST00000490193 BCL11BQ9C0K0 894 aaPredicted RBP11.91□□□□□ -0.5
USP39-216ENST00000490193 ANO8Q9HCE9 1232 aaPredicted RBP11.91□□□□□ -0.5
USP39-216ENST00000490193 CPSF1Q10570 1443 aaKnown RBP11.91□□□□□ -0.5
USP39-216ENST00000490193 ABCC6O95255 1503 aa11.91□□□□□ -0.5
USP39-216ENST00000490193 MYOM1P52179 1685 aa11.91□□□□□ -0.5
USP39-216ENST00000490193 WDR17Q8IZU2 1322 aa11.9□□□□□ -0.5
USP39-216ENST00000490193 ZBTB22O15209 634 aa11.9□□□□□ -0.5
USP39-216ENST00000490193 NLRP6P59044 892 aa11.9□□□□□ -0.5
USP39-216ENST00000490193 CDCA7Q9BWT1 371 aaPredicted RBP11.9□□□□□ -0.5
USP39-216ENST00000490193 CABP2Q9NPB3 220 aa11.9□□□□□ -0.5
USP39-216ENST00000490193 CHD4Q14839 1912 aa11.9□□□□□ -0.51
USP39-216ENST00000490193 TOM1L2Q6ZVM7 507 aa11.89□□□□□ -0.51
USP39-216ENST00000490193 NHSQ6T4R5 1651 aa11.88□□□□□ -0.51
USP39-216ENST00000490193 NFAT5O94916 1531 aa11.88□□□□□ -0.51
USP39-216ENST00000490193 PROM2Q8N271 834 aa11.88□□□□□ -0.51
USP39-216ENST00000490193 MARCH10Q8NA82 808 aaPredicted RBP11.88□□□□□ -0.51
USP39-216ENST00000490193 CABP1Q9NZU7 370 aa11.88□□□□□ -0.51
USP39-216ENST00000490193 AXIN2Q9Y2T1 843 aa11.88□□□□□ -0.51
USP39-216ENST00000490193 USP54Q70EL1 1684 aa11.87□□□□□ -0.51
USP39-216ENST00000490193 PTF1AQ7RTS3 328 aa11.87□□□□□ -0.51
USP39-216ENST00000490193 ARHGEF25Q86VW2 580 aa11.87□□□□□ -0.51
USP39-216ENST00000490193 SENP3-EIF4A1A0A087X0R7 540 aa11.86□□□□□ -0.51
USP39-216ENST00000490193 PTGER2P43116 358 aa11.86□□□□□ -0.51
USP39-216ENST00000490193 ZNF784Q8NCA9 323 aaPredicted RBP11.86□□□□□ -0.51
USP39-216ENST00000490193 KCNH5Q8NCM2 988 aa11.86□□□□□ -0.51
USP39-216ENST00000490193 CARD10Q9BWT7 1032 aa11.86□□□□□ -0.51
USP39-216ENST00000490193 PDGFDQ9GZP0 370 aaPredicted RBP11.86□□□□□ -0.51
USP39-216ENST00000490193 MON2Q7Z3U7 1717 aa11.86□□□□□ -0.51
USP39-216ENST00000490193 PAPPAQ13219 1627 aa11.86□□□□□ -0.51
USP39-216ENST00000490193 TNS2Q63HR2 1409 aa11.86□□□□□ -0.51
USP39-216ENST00000490193 UTRNP46939 3433 aa11.85□□□□□ -0.51
USP39-216ENST00000490193 CCDC7Q96M83 1385 aa11.85□□□□□ -0.51
USP39-216ENST00000490193 ZBTB7CA1YPR0 619 aa11.85□□□□□ -0.51
USP39-216ENST00000490193 ZNF692Q9BU19 519 aaPredicted RBP11.85□□□□□ -0.51
USP39-216ENST00000490193 TTC21BQ7Z4L5 1316 aa11.85□□□□□ -0.51
USP39-216ENST00000490193 EVC2Q86UK5 1308 aa11.85□□□□□ -0.51
USP39-216ENST00000490193 TTC21AQ8NDW8 1320 aa11.85□□□□□ -0.51
USP39-216ENST00000490193 TXNRD1Q16881 649 aa11.84□□□□□ -0.51
USP39-216ENST00000490193 ZBTB7AO95365 584 aa11.83□□□□□ -0.52
USP39-216ENST00000490193 SLC15A2Q16348 729 aa11.83□□□□□ -0.52
USP39-216ENST00000490193 SGIP1Q9BQI5 828 aa11.83□□□□□ -0.52
USP39-216ENST00000490193 STK32BQ9NY57 414 aa11.83□□□□□ -0.52
USP39-216ENST00000490193 CLEC11AQ9Y240 323 aa11.83□□□□□ -0.52
USP39-216ENST00000490193 SSUH2Q9Y2M2 353 aa11.83□□□□□ -0.52
USP39-216ENST00000490193 QSER1Q2KHR3 1735 aa11.83□□□□□ -0.52
USP39-216ENST00000490193 BTAF1O14981 1849 aa11.82□□□□□ -0.52
USP39-216ENST00000490193 EXOC5O00471 708 aa11.82□□□□□ -0.52
USP39-216ENST00000490193 MTFR1LQ9H019 292 aa11.82□□□□□ -0.52
USP39-216ENST00000490193 LTN1O94822 1766 aa11.82□□□□□ -0.52
USP39-216ENST00000490193 MAP3K5Q99683 1374 aa11.81□□□□□ -0.52
USP39-216ENST00000490193 COL24A1Q17RW2 1714 aa11.81□□□□□ -0.52
USP39-216ENST00000490193 GABBR2O75899 941 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms