RNA–Protein interactions for RNA: ENST00000489108.1

USP48-210, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 443 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-210ENST00000489108 ZNF784Q8NCA9 323 aaPredicted RBP23.6■■□□□ 1.37
USP48-210ENST00000489108 NBPF1Q3BBV0 1214 aa23.59■■□□□ 1.37
USP48-210ENST00000489108 AXIN2Q9Y2T1 843 aa23.58■■□□□ 1.37
USP48-210ENST00000489108 CABP1Q9NZU7 370 aa23.57■■□□□ 1.36
USP48-210ENST00000489108 MYOM1P52179 1685 aa23.57■■□□□ 1.36
USP48-210ENST00000489108 BRD4O60885 1362 aaPredicted RBP23.56■■□□□ 1.36
USP48-210ENST00000489108 TXNRD1Q16881 649 aa23.56■■□□□ 1.36
USP48-210ENST00000489108 COL18A1P39060 1754 aa23.55■■□□□ 1.36
USP48-210ENST00000489108 SYT17Q9BSW7 474 aa23.55■■□□□ 1.36
USP48-210ENST00000489108 FHDC1Q9C0D6 1143 aaPredicted RBP23.55■■□□□ 1.36
USP48-210ENST00000489108 STK32BQ9NY57 414 aa23.55■■□□□ 1.36
USP48-210ENST00000489108 WDR17Q8IZU2 1322 aa23.55■■□□□ 1.36
USP48-210ENST00000489108 SLC15A2Q16348 729 aa23.54■■□□□ 1.36
USP48-210ENST00000489108 SLIT3O75094 1523 aa23.54■■□□□ 1.36
USP48-210ENST00000489108 USP6P35125 1406 aa23.53■■□□□ 1.36
USP48-210ENST00000489108 CDCA7Q9BWT1 371 aaPredicted RBP23.53■■□□□ 1.36
USP48-210ENST00000489108 CENPJQ9HC77 1338 aaPredicted RBP23.53■■□□□ 1.36
USP48-210ENST00000489108 KIAA1210Q9ULL0 1709 aa23.53■■□□□ 1.36
USP48-210ENST00000489108 BCL9O00512 1426 aa23.52■■□□□ 1.36
USP48-210ENST00000489108 AKAP12Q02952 1782 aa23.52■■□□□ 1.36
USP48-210ENST00000489108 UTRNP46939 3433 aa23.52■■□□□ 1.36
USP48-210ENST00000489108 WNK3Q9BYP7 1800 aa23.51■■□□□ 1.35
USP48-210ENST00000489108 EXOC5O00471 708 aa23.49■■□□□ 1.35
USP48-210ENST00000489108 ARHGEF25Q86VW2 580 aa23.49■■□□□ 1.35
USP48-210ENST00000489108 SGIP1Q9BQI5 828 aa23.49■■□□□ 1.35
USP48-210ENST00000489108 CARD10Q9BWT7 1032 aa23.49■■□□□ 1.35
USP48-210ENST00000489108 MTFR1LQ9H019 292 aa23.49■■□□□ 1.35
USP48-210ENST00000489108 RGPD5Q99666 1765 aa23.49■■□□□ 1.35
USP48-210ENST00000489108 CSB-PGBD3P0DP91 1061 aa23.48■■□□□ 1.35
USP48-210ENST00000489108 CHD4Q14839 1912 aa23.47■■□□□ 1.35
USP48-210ENST00000489108 SENP3-EIF4A1A0A087X0R7 540 aa23.46■■□□□ 1.35
USP48-210ENST00000489108 PIK3C2AO00443 1686 aa23.46■■□□□ 1.35
USP48-210ENST00000489108 SOX12O15370 315 aa23.46■■□□□ 1.35
USP48-210ENST00000489108 CPSF1Q10570 1443 aaKnown RBP23.46■■□□□ 1.35
USP48-210ENST00000489108 C1QTNF8P60827 252 aa23.44■■□□□ 1.34
USP48-210ENST00000489108 KCNH5Q8NCM2 988 aa23.43■■□□□ 1.34
USP48-210ENST00000489108 ARXQ96QS3 562 aa23.43■■□□□ 1.34
USP48-210ENST00000489108 QRICH2Q9H0J4 1663 aa23.43■■□□□ 1.34
USP48-210ENST00000489108 TTC21BQ7Z4L5 1316 aa23.42■■□□□ 1.34
USP48-210ENST00000489108 ACSBG1Q96GR2 724 aa23.42■■□□□ 1.34
USP48-210ENST00000489108 ZNF692Q9BU19 519 aaPredicted RBP23.4■■□□□ 1.34
USP48-210ENST00000489108 CCDC7Q96M83 1385 aa23.39■■□□□ 1.33
USP48-210ENST00000489108 EVC2Q86UK5 1308 aa23.37■■□□□ 1.33
USP48-210ENST00000489108 TNS2Q63HR2 1409 aa23.36■■□□□ 1.33
USP48-210ENST00000489108 KAT6BQ8WYB5 2073 aa23.36■■□□□ 1.33
USP48-210ENST00000489108 NHSQ6T4R5 1651 aa23.35■■□□□ 1.33
USP48-210ENST00000489108 GPR162Q16538 588 aa23.35■■□□□ 1.33
USP48-210ENST00000489108 TTC21AQ8NDW8 1320 aa23.34■■□□□ 1.33
USP48-210ENST00000489108 TRPM1Q7Z4N2 1603 aa23.34■■□□□ 1.33
USP48-210ENST00000489108 ZNF827Q17R98 1081 aa23.34■■□□□ 1.33
USP48-210ENST00000489108 MAP3K5Q99683 1374 aa23.34■■□□□ 1.33
USP48-210ENST00000489108 LRRC4BQ9NT99 713 aa23.33■■□□□ 1.33
USP48-210ENST00000489108 NFAT5O94916 1531 aa23.33■■□□□ 1.32
USP48-210ENST00000489108 NLRP2Q9NX02 1062 aa23.32■■□□□ 1.32
USP48-210ENST00000489108 PAPPAQ13219 1627 aa23.32■■□□□ 1.32
USP48-210ENST00000489108 KLHL34Q8N239 644 aa23.3■■□□□ 1.32
USP48-210ENST00000489108 BTAF1O14981 1849 aa23.3■■□□□ 1.32
USP48-210ENST00000489108 IL2RBP14784 551 aa23.29■■□□□ 1.32
USP48-210ENST00000489108 KTN1Q86UP2 1357 aaKnown RBP23.28■■□□□ 1.32
USP48-210ENST00000489108 ABCC6O95255 1503 aa23.28■■□□□ 1.32
USP48-210ENST00000489108 AKT1S1Q96B36 256 aa23.27■■□□□ 1.32
USP48-210ENST00000489108 ERBB3P21860 1342 aa23.27■■□□□ 1.32
USP48-210ENST00000489108 GIGYF1O75420 1035 aaPredicted RBP23.26■■□□□ 1.31
USP48-210ENST00000489108 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.26■■□□□ 1.31
USP48-210ENST00000489108 PELP1Q8IZL8 1130 aaKnown RBP23.26■■□□□ 1.31
USP48-210ENST00000489108 SLC16A10Q8TF71 515 aa23.26■■□□□ 1.31
USP48-210ENST00000489108 L3MBTL2Q969R5 705 aa23.25■■□□□ 1.31
USP48-210ENST00000489108 POLD1P28340 1107 aa23.24■■□□□ 1.31
USP48-210ENST00000489108 IFFO2Q5TF58 517 aa23.24■■□□□ 1.31
USP48-210ENST00000489108 ANKRD24Q8TF21 1146 aa23.23■■□□□ 1.31
USP48-210ENST00000489108 NME9Q86XW9 330 aa23.22■■□□□ 1.31
USP48-210ENST00000489108 SLC27A3Q5K4L6 730 aa23.21■■□□□ 1.31
USP48-210ENST00000489108 NLGN2Q8NFZ4 835 aa23.21■■□□□ 1.31
USP48-210ENST00000489108 PNPLA7Q6ZV29 1317 aa23.21■■□□□ 1.31
USP48-210ENST00000489108 USP31Q70CQ4 1352 aa23.21■■□□□ 1.31
USP48-210ENST00000489108 KCNQ4P56696 695 aa23.2■■□□□ 1.3
USP48-210ENST00000489108 DDX54Q8TDD1 881 aaKnown RBP23.2■■□□□ 1.3
USP48-210ENST00000489108 GOLGB1Q14789 3259 aaKnown RBP23.2■■□□□ 1.3
USP48-210ENST00000489108 LTN1O94822 1766 aa23.19■■□□□ 1.3
USP48-210ENST00000489108 TFCP2L1Q9NZI6 479 aa23.19■■□□□ 1.3
USP48-210ENST00000489108 COL24A1Q17RW2 1714 aa23.18■■□□□ 1.3
USP48-210ENST00000489108 QSER1Q2KHR3 1735 aa23.18■■□□□ 1.3
USP48-210ENST00000489108 MON2Q7Z3U7 1717 aa23.18■■□□□ 1.3
USP48-210ENST00000489108 ROCK2O75116 1388 aaKnown RBP23.15■■□□□ 1.3
USP48-210ENST00000489108 SYTL4Q96C24 671 aaPredicted RBP23.15■■□□□ 1.3
USP48-210ENST00000489108 SHANK3Q9BYB0 1731 aa23.15■■□□□ 1.3
USP48-210ENST00000489108 TUBGCP6Q96RT7 1819 aa23.15■■□□□ 1.3
USP48-210ENST00000489108 SBNO2Q9Y2G9 1366 aa23.14■■□□□ 1.3
USP48-210ENST00000489108 USP54Q70EL1 1684 aa23.14■■□□□ 1.29
USP48-210ENST00000489108 YBX3P16989 372 aaKnown RBP eCLIP23.14■■□□□ 1.29
USP48-210ENST00000489108 PRIM1P49642 420 aaKnown RBP23.14■■□□□ 1.29
USP48-210ENST00000489108 LTV1Q96GA3 475 aaPredicted RBP23.13■■□□□ 1.29
USP48-210ENST00000489108 CEP350Q5VT06 3117 aa23.13■■□□□ 1.29
USP48-210ENST00000489108 GRIN3BO60391 1043 aa23.12■■□□□ 1.29
USP48-210ENST00000489108 TMC1Q8TDI8 760 aa23.12■■□□□ 1.29
USP48-210ENST00000489108 CD163L1Q9NR16 1453 aa23.11■■□□□ 1.29
USP48-210ENST00000489108 IP6K1Q92551 441 aa23.11■■□□□ 1.29
USP48-210ENST00000489108 SIN3AQ96ST3 1273 aa23.11■■□□□ 1.29
USP48-210ENST00000489108 SLC12A5Q9H2X9 1139 aa23.1■■□□□ 1.29
USP48-210ENST00000489108 MSH5O43196 834 aa23.09■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 402.8 ms