RNA–Protein interactions for RNA: ENST00000486032.1

COPS3-208, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 2

Gene COPS3, Length 725 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-208ENST00000486032 ASXL1Q8IXJ9 1541 aa8.08□□□□□ -1.12
COPS3-208ENST00000486032 CLSPNQ9HAW4 1339 aa8.07□□□□□ -1.12
COPS3-208ENST00000486032 ABCF1Q8NE71 845 aaKnown RBP eCLIP8.07□□□□□ -1.12
COPS3-208ENST00000486032 ZDHHC16Q969W1 377 aa8.07□□□□□ -1.12
COPS3-208ENST00000486032 PLEKHG1Q9ULL1 1385 aa8.07□□□□□ -1.12
COPS3-208ENST00000486032 RPGRIP1LQ68CZ1 1315 aa8.06□□□□□ -1.12
COPS3-208ENST00000486032 ADGRF5Q8IZF2 1346 aa8.06□□□□□ -1.12
COPS3-208ENST00000486032 ZFRQ96KR1 1074 aaKnown RBP8.06□□□□□ -1.12
COPS3-208ENST00000486032 ADAM33Q9BZ11 813 aa8.06□□□□□ -1.12
COPS3-208ENST00000486032 CHD2O14647 1828 aaKnown RBP8.06□□□□□ -1.12
COPS3-208ENST00000486032 SETBP1Q9Y6X0 1596 aa8.05□□□□□ -1.12
COPS3-208ENST00000486032 UPF1Q92900 1129 aaKnown RBP eCLIP8.05□□□□□ -1.12
COPS3-208ENST00000486032 XRN1Q8IZH2 1706 aaKnown RBP8.05□□□□□ -1.12
COPS3-208ENST00000486032 METP08581 1390 aa8.05□□□□□ -1.12
COPS3-208ENST00000486032 CPS1P31327 1500 aa8.04□□□□□ -1.12
COPS3-208ENST00000486032 LOC100996750A0A140TA64 210 aa8.04□□□□□ -1.12
COPS3-208ENST00000486032 TREML4Q6UXN2 200 aa8.04□□□□□ -1.12
COPS3-208ENST00000486032 FBXO41Q8TF61 875 aa8.04□□□□□ -1.12
COPS3-208ENST00000486032 KRTAP4-6Q9BYQ5 205 aa8.04□□□□□ -1.12
COPS3-208ENST00000486032 PPP1R3GB7ZBB8 358 aa8.03□□□□□ -1.12
COPS3-208ENST00000486032 CFAP70Q5T0N1 1121 aa8.03□□□□□ -1.12
COPS3-208ENST00000486032 TMEM94Q12767 1356 aa8.02□□□□□ -1.13
COPS3-208ENST00000486032 KCNA6P17658 529 aa8.02□□□□□ -1.13
COPS3-208ENST00000486032 PROX2Q3B8N5 592 aa8.02□□□□□ -1.13
COPS3-208ENST00000486032 NBPF8Q3BBV2 869 aa8.02□□□□□ -1.13
COPS3-208ENST00000486032 TMEM132EQ6IEE7 984 aa8.02□□□□□ -1.13
COPS3-208ENST00000486032 TSR3Q9UJK0 312 aaKnown RBP8.02□□□□□ -1.13
COPS3-208ENST00000486032 DIP2AQ14689 1571 aa8.01□□□□□ -1.13
COPS3-208ENST00000486032 IQSEC2Q5JU85 1478 aa8.01□□□□□ -1.13
COPS3-208ENST00000486032 NALCNQ8IZF0 1738 aa8.01□□□□□ -1.13
COPS3-208ENST00000486032 ANO8Q9HCE9 1232 aaPredicted RBP8.01□□□□□ -1.13
COPS3-208ENST00000486032 STK26Q9P289 416 aa8.01□□□□□ -1.13
COPS3-208ENST00000486032 MYOM2P54296 1465 aa8□□□□□ -1.13
COPS3-208ENST00000486032 UBAP1LF5GYI3 381 aa8□□□□□ -1.13
COPS3-208ENST00000486032 NBPF1Q3BBV0 1214 aa8□□□□□ -1.13
COPS3-208ENST00000486032 PPP1R18Q6NYC8 613 aa8□□□□□ -1.13
COPS3-208ENST00000486032 TIMELESSQ9UNS1 1208 aa8□□□□□ -1.13
COPS3-208ENST00000486032 NKTRP30414 1462 aaKnown RBP8□□□□□ -1.13
COPS3-208ENST00000486032 ROBO2Q9HCK4 1378 aa7.99□□□□□ -1.13
COPS3-208ENST00000486032 PIK3C2GO75747 1445 aa7.99□□□□□ -1.13
COPS3-208ENST00000486032 PIP4K2BP78356 416 aa7.99□□□□□ -1.13
COPS3-208ENST00000486032 LCE2AQ5TA79 106 aaPredicted RBP7.99□□□□□ -1.13
COPS3-208ENST00000486032 PRAG1Q86YV5 1406 aa7.99□□□□□ -1.13
COPS3-208ENST00000486032 STK17AQ9UEE5 414 aa7.99□□□□□ -1.13
COPS3-208ENST00000486032 HPS5Q9UPZ3 1129 aa7.99□□□□□ -1.13
COPS3-208ENST00000486032 TBX22Q9Y458 520 aa7.99□□□□□ -1.13
COPS3-208ENST00000486032 NRXN1Q9ULB1 1477 aa7.99□□□□□ -1.13
COPS3-208ENST00000486032 PLEKHH1Q9ULM0 1364 aa7.98□□□□□ -1.13
COPS3-208ENST00000486032 SIPA1L2Q9P2F8 1722 aaPredicted RBP7.98□□□□□ -1.13
COPS3-208ENST00000486032 C14orf93Q9H972 538 aaKnown RBP7.98□□□□□ -1.13
COPS3-208ENST00000486032 TRAK1Q9UPV9 953 aa7.98□□□□□ -1.13
COPS3-208ENST00000486032 AMOTL2Q9Y2J4 779 aa7.98□□□□□ -1.13
COPS3-208ENST00000486032 ROCK2O75116 1388 aaKnown RBP7.97□□□□□ -1.13
COPS3-208ENST00000486032 POTECB2RU33 542 aa7.97□□□□□ -1.13
COPS3-208ENST00000486032 ZEB1P37275 1124 aaPredicted RBP7.97□□□□□ -1.13
COPS3-208ENST00000486032 SAFB2Q14151 953 aaKnown RBP eCLIP7.97□□□□□ -1.13
COPS3-208ENST00000486032 PROSER2Q86WR7 435 aaPredicted RBP7.97□□□□□ -1.13
COPS3-208ENST00000486032 CARD11Q9BXL7 1154 aa7.97□□□□□ -1.13
COPS3-208ENST00000486032 CDKN2AIPQ9NXV6 580 aaPredicted RBP7.97□□□□□ -1.13
COPS3-208ENST00000486032 KIAA1468Q9P260 1216 aa7.97□□□□□ -1.13
COPS3-208ENST00000486032 ADGRB1O14514 1584 aa7.97□□□□□ -1.13
COPS3-208ENST00000486032 ROBO1Q9Y6N7 1651 aa7.96□□□□□ -1.13
COPS3-208ENST00000486032 HSPA1LP34931 641 aa7.96□□□□□ -1.14
COPS3-208ENST00000486032 TJAP1Q5JTD0 557 aa7.96□□□□□ -1.14
COPS3-208ENST00000486032 LRCH3Q96II8 777 aa7.96□□□□□ -1.14
COPS3-208ENST00000486032 C14orf37Q86TY3 774 aa7.95□□□□□ -1.14
COPS3-208ENST00000486032 EIF4ENIF1Q9NRA8 985 aaKnown RBP7.95□□□□□ -1.14
COPS3-208ENST00000486032 POGKQ9P215 609 aa7.95□□□□□ -1.14
COPS3-208ENST00000486032 LAMC1P11047 1609 aa7.95□□□□□ -1.14
COPS3-208ENST00000486032 TRPM1Q7Z4N2 1603 aa7.95□□□□□ -1.14
COPS3-208ENST00000486032 KNDC1Q76NI1 1749 aa7.95□□□□□ -1.14
COPS3-208ENST00000486032 ONECUT3O60422 494 aaPredicted RBP7.94□□□□□ -1.14
COPS3-208ENST00000486032 EVI5O60447 810 aa7.94□□□□□ -1.14
COPS3-208ENST00000486032 COL9A1P20849 921 aa7.94□□□□□ -1.14
COPS3-208ENST00000486032 WAPLQ7Z5K2 1190 aa7.94□□□□□ -1.14
COPS3-208ENST00000486032 HIRIP3Q9BW71 556 aaPredicted RBP7.94□□□□□ -1.14
COPS3-208ENST00000486032 YTHDC2Q9H6S0 1430 aaKnown RBP7.94□□□□□ -1.14
COPS3-208ENST00000486032 RALGAPBQ86X10 1494 aa7.94□□□□□ -1.14
COPS3-208ENST00000486032 MYT1Q01538 1121 aa7.93□□□□□ -1.14
COPS3-208ENST00000486032 PKDCCQ504Y2 493 aa7.93□□□□□ -1.14
COPS3-208ENST00000486032 DDX17Q92841 729 aaKnown RBP7.93□□□□□ -1.14
COPS3-208ENST00000486032 PRAM1Q96QH2 718 aa7.93□□□□□ -1.14
COPS3-208ENST00000486032 SEPT9Q9UHD8 586 aaPredicted RBP7.93□□□□□ -1.14
COPS3-208ENST00000486032 LRPPRCP42704 1394 aaKnown RBP7.93□□□□□ -1.14
COPS3-208ENST00000486032 PIK3R4Q99570 1358 aa7.93□□□□□ -1.14
COPS3-208ENST00000486032 MST1RQ04912 1400 aa7.93□□□□□ -1.14
COPS3-208ENST00000486032 PTCH1Q13635 1447 aa7.93□□□□□ -1.14
COPS3-208ENST00000486032 ADGRL3Q9HAR2 1447 aa7.93□□□□□ -1.14
COPS3-208ENST00000486032 KIAA1210Q9ULL0 1709 aa7.92□□□□□ -1.14
COPS3-208ENST00000486032 FAM98CQ17RN3 349 aaKnown RBP7.92□□□□□ -1.14
COPS3-208ENST00000486032 MINK1Q8N4C8 1332 aaPredicted RBP7.92□□□□□ -1.14
COPS3-208ENST00000486032 ARHGEF28Q8N1W1 1705 aaKnown RBP7.92□□□□□ -1.14
COPS3-208ENST00000486032 DGAT1O75907 488 aa7.91□□□□□ -1.14
COPS3-208ENST00000486032 TECPR2O15040 1411 aa7.91□□□□□ -1.14
COPS3-208ENST00000486032 COL16A1Q07092 1604 aaPredicted RBP7.91□□□□□ -1.14
COPS3-208ENST00000486032 USP32Q8NFA0 1604 aa7.91□□□□□ -1.14
COPS3-208ENST00000486032 MSH6P52701 1360 aa7.9□□□□□ -1.14
COPS3-208ENST00000486032 ABCC11Q96J66 1382 aa7.9□□□□□ -1.14
COPS3-208ENST00000486032 USP47Q96K76 1375 aa7.9□□□□□ -1.14
COPS3-208ENST00000486032 CENPJQ9HC77 1338 aaPredicted RBP7.9□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms