RNA–Protein interactions for RNA: ENST00000478934.5

VPS52-217, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 2,602 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-217ENST00000478934 ATP7BP35670 1465 aa13.68□□□□□ -0.22
VPS52-217ENST00000478934 MRPL50Q8N5N7 158 aaKnown RBP13.68□□□□□ -0.22
VPS52-217ENST00000478934 SLC26A8Q96RN1 970 aa13.68□□□□□ -0.22
VPS52-217ENST00000478934 TBC1D2Q9BYX2 928 aa13.68□□□□□ -0.22
VPS52-217ENST00000478934 PPP6R1Q9UPN7 881 aa13.68□□□□□ -0.22
VPS52-217ENST00000478934 SETD1AO15047 1707 aaKnown RBP13.68□□□□□ -0.22
VPS52-217ENST00000478934 ROBO2Q9HCK4 1378 aa13.68□□□□□ -0.22
VPS52-217ENST00000478934 LTKP29376 864 aa13.68□□□□□ -0.22
VPS52-217ENST00000478934 SMC5Q8IY18 1101 aa13.68□□□□□ -0.22
VPS52-217ENST00000478934 AGLP35573 1532 aa13.68□□□□□ -0.22
VPS52-217ENST00000478934 KIF16BQ96L93 1317 aa13.68□□□□□ -0.22
VPS52-217ENST00000478934 IPO8O15397 1037 aaKnown RBP13.67□□□□□ -0.22
VPS52-217ENST00000478934 EDC4Q6P2E9 1401 aaKnown RBP13.67□□□□□ -0.22
VPS52-217ENST00000478934 DLC1Q96QB1 1528 aa13.67□□□□□ -0.22
VPS52-217ENST00000478934 ALDH1L2Q3SY69 923 aa13.66□□□□□ -0.22
VPS52-217ENST00000478934 UPF2Q9HAU5 1272 aaKnown RBP13.66□□□□□ -0.22
VPS52-217ENST00000478934 ZBTB7BO15156 539 aaPredicted RBP13.66□□□□□ -0.22
VPS52-217ENST00000478934 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.66□□□□□ -0.22
VPS52-217ENST00000478934 TWISTNBQ3B726 338 aaPredicted RBP13.65□□□□□ -0.22
VPS52-217ENST00000478934 SULT6B1Q6IMI4 303 aa13.65□□□□□ -0.22
VPS52-217ENST00000478934 ZNF853P0CG23 659 aa13.65□□□□□ -0.22
VPS52-217ENST00000478934 SIRT2Q8IXJ6 389 aa13.65□□□□□ -0.22
VPS52-217ENST00000478934 EIF4A2Q14240 407 aaKnown RBP13.64□□□□□ -0.23
VPS52-217ENST00000478934 BECN1Q14457 450 aa13.64□□□□□ -0.23
VPS52-217ENST00000478934 HSP90AB2PQ58FF8 381 aa13.64□□□□□ -0.23
VPS52-217ENST00000478934 MCM10Q7L590 875 aa13.64□□□□□ -0.23
VPS52-217ENST00000478934 ANO8Q9HCE9 1232 aaPredicted RBP13.64□□□□□ -0.23
VPS52-217ENST00000478934 GNAI1P63096 354 aa13.64□□□□□ -0.23
VPS52-217ENST00000478934 ANKRD45Q5TZF3 282 aa13.64□□□□□ -0.23
VPS52-217ENST00000478934 C22orf23Q9BZE7 217 aa13.64□□□□□ -0.23
VPS52-217ENST00000478934 IFT57Q9NWB7 429 aa13.64□□□□□ -0.23
VPS52-217ENST00000478934 NUCB1Q02818 461 aa13.63□□□□□ -0.23
VPS52-217ENST00000478934 MIS18AQ9NYP9 233 aa13.63□□□□□ -0.23
VPS52-217ENST00000478934 ACEP12821 1306 aa13.63□□□□□ -0.23
VPS52-217ENST00000478934 ANTXR1Q9H6X2 564 aa13.63□□□□□ -0.23
VPS52-217ENST00000478934 TNRQ92752 1358 aa13.63□□□□□ -0.23
VPS52-217ENST00000478934 CDC42BPGQ6DT37 1551 aa13.63□□□□□ -0.23
VPS52-217ENST00000478934 CHD1LQ86WJ1 897 aa13.62□□□□□ -0.23
VPS52-217ENST00000478934 REREQ9P2R6 1566 aa13.62□□□□□ -0.23
VPS52-217ENST00000478934 CFAP44Q96MT7 982 aa13.62□□□□□ -0.23
VPS52-217ENST00000478934 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.62□□□□□ -0.23
VPS52-217ENST00000478934 TMEM2Q9UHN6 1383 aa13.62□□□□□ -0.23
VPS52-217ENST00000478934 TTC21BQ7Z4L5 1316 aa13.61□□□□□ -0.23
VPS52-217ENST00000478934 FOXO3O43524 673 aa13.61□□□□□ -0.23
VPS52-217ENST00000478934 AATKQ6ZMQ8 1374 aa13.61□□□□□ -0.23
VPS52-217ENST00000478934 CDK12Q9NYV4 1490 aaPredicted RBP13.6□□□□□ -0.23
VPS52-217ENST00000478934 ADAMTS13Q76LX8 1427 aa13.59□□□□□ -0.23
VPS52-217ENST00000478934 GZF1Q9H116 711 aaPredicted RBP13.59□□□□□ -0.23
VPS52-217ENST00000478934 BRPF1P55201 1214 aaPredicted RBP13.59□□□□□ -0.23
VPS52-217ENST00000478934 ZNF692Q9BU19 519 aaPredicted RBP13.59□□□□□ -0.23
VPS52-217ENST00000478934 HDGFP51858 240 aaKnown RBP13.58□□□□□ -0.24
VPS52-217ENST00000478934 CALD1Q05682 793 aaKnown RBP13.58□□□□□ -0.24
VPS52-217ENST00000478934 ABCC4O15439 1325 aa13.58□□□□□ -0.24
VPS52-217ENST00000478934 NUTM2GQ5VZR2 741 aa13.58□□□□□ -0.24
VPS52-217ENST00000478934 C16orf71Q8IYS4 520 aaPredicted RBP13.57□□□□□ -0.24
VPS52-217ENST00000478934 TECPR2O15040 1411 aa13.57□□□□□ -0.24
VPS52-217ENST00000478934 PTPRUQ92729 1446 aa13.57□□□□□ -0.24
VPS52-217ENST00000478934 APBB1O00213 710 aa13.57□□□□□ -0.24
VPS52-217ENST00000478934 PTCH1Q13635 1447 aa13.56□□□□□ -0.24
VPS52-217ENST00000478934 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.56□□□□□ -0.24
VPS52-217ENST00000478934 ARHGAP45Q92619 1136 aa13.56□□□□□ -0.24
VPS52-217ENST00000478934 SIRT1Q96EB6 747 aa13.56□□□□□ -0.24
VPS52-217ENST00000478934 AMOTL2Q9Y2J4 779 aa13.56□□□□□ -0.24
VPS52-217ENST00000478934 DLG5Q8TDM6 1919 aa13.56□□□□□ -0.24
VPS52-217ENST00000478934 ZNF428Q96B54 188 aa13.56□□□□□ -0.24
VPS52-217ENST00000478934 LMOD3Q0VAK6 560 aa13.55□□□□□ -0.24
VPS52-217ENST00000478934 OTUD7AQ8TE49 926 aaPredicted RBP13.55□□□□□ -0.24
VPS52-217ENST00000478934 FOXD4L1Q9NU39 408 aa13.55□□□□□ -0.24
VPS52-217ENST00000478934 PIK3R4Q99570 1358 aa13.54□□□□□ -0.24
VPS52-217ENST00000478934 C3P01024 1663 aa13.54□□□□□ -0.24
VPS52-217ENST00000478934 RBM42Q9BTD8 480 aaKnown RBP13.54□□□□□ -0.24
VPS52-217ENST00000478934 MAP3K19Q56UN5 1328 aa13.54□□□□□ -0.24
VPS52-217ENST00000478934 MON2Q7Z3U7 1717 aa13.54□□□□□ -0.24
VPS52-217ENST00000478934 RBM33Q96EV2 1170 aaKnown RBP13.54□□□□□ -0.24
VPS52-217ENST00000478934 PLEKHG3A1L390 1219 aa13.53□□□□□ -0.24
VPS52-217ENST00000478934 CHL1O00533 1208 aa13.53□□□□□ -0.24
VPS52-217ENST00000478934 CD2BP2O95400 341 aaKnown RBP13.53□□□□□ -0.24
VPS52-217ENST00000478934 MTHFSDQ2M296 383 aaKnown RBP13.53□□□□□ -0.24
VPS52-217ENST00000478934 KIF13AQ9H1H9 1805 aa13.53□□□□□ -0.24
VPS52-217ENST00000478934 SMARCA5O60264 1052 aaPredicted RBP13.53□□□□□ -0.24
VPS52-217ENST00000478934 TBC1D9Q6ZT07 1266 aa13.53□□□□□ -0.24
VPS52-217ENST00000478934 G2E3Q7L622 706 aa13.53□□□□□ -0.24
VPS52-217ENST00000478934 USP6P35125 1406 aa13.52□□□□□ -0.24
VPS52-217ENST00000478934 GCC1Q96CN9 775 aa13.52□□□□□ -0.24
VPS52-217ENST00000478934 API5Q9BZZ5 524 aaKnown RBP13.52□□□□□ -0.24
VPS52-217ENST00000478934 F6X3S4 739 aa13.52□□□□□ -0.25
VPS52-217ENST00000478934 BMP2KLQ5H9B9 411 aa13.52□□□□□ -0.25
VPS52-217ENST00000478934 NGDNQ8NEJ9 315 aaKnown RBP13.52□□□□□ -0.25
VPS52-217ENST00000478934 KIF2CQ99661 725 aa13.52□□□□□ -0.25
VPS52-217ENST00000478934 UBR1Q8IWV7 1749 aa13.52□□□□□ -0.25
VPS52-217ENST00000478934 OVOS2A0A0J9YW53 1432 aa13.52□□□□□ -0.25
VPS52-217ENST00000478934 OVOS2Q6IE36 1432 aa13.52□□□□□ -0.25
VPS52-217ENST00000478934 PEAK1Q9H792 1746 aa13.51□□□□□ -0.25
VPS52-217ENST00000478934 SLC4A2P04920 1241 aa13.51□□□□□ -0.25
VPS52-217ENST00000478934 GSPT1P15170 499 aaKnown RBP13.51□□□□□ -0.25
VPS52-217ENST00000478934 NECTIN2Q92692 538 aa13.51□□□□□ -0.25
VPS52-217ENST00000478934 MEIS3Q99687 375 aa13.51□□□□□ -0.25
VPS52-217ENST00000478934 AKAP12Q02952 1782 aa13.51□□□□□ -0.25
VPS52-217ENST00000478934 ITSN1Q15811 1721 aa13.5□□□□□ -0.25
VPS52-217ENST00000478934 RGS12O14924 1447 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms