RNA–Protein interactions for RNA: ENST00000476387.1

COL1A1-205, Transcript of collagen type I alpha 1 chain, humanhuman

TSL 2

Gene COL1A1, Length 600 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-205ENST00000476387 USP31Q70CQ4 1352 aa22.8■■□□□ 1.24
COL1A1-205ENST00000476387 AXIN2Q9Y2T1 843 aa22.8■■□□□ 1.24
COL1A1-205ENST00000476387 ABCC6O95255 1503 aa22.8■■□□□ 1.24
COL1A1-205ENST00000476387 PARD3Q8TEW0 1356 aa22.79■■□□□ 1.24
COL1A1-205ENST00000476387 TOM1L2Q6ZVM7 507 aa22.79■■□□□ 1.24
COL1A1-205ENST00000476387 HDGFL2Q7Z4V5 671 aaPredicted RBP22.79■■□□□ 1.24
COL1A1-205ENST00000476387 TMC1Q8TDI8 760 aa22.79■■□□□ 1.24
COL1A1-205ENST00000476387 USP54Q70EL1 1684 aa22.78■■□□□ 1.24
COL1A1-205ENST00000476387 SLC24A1O60721 1099 aa22.78■■□□□ 1.24
COL1A1-205ENST00000476387 EDC4Q6P2E9 1401 aaKnown RBP22.77■■□□□ 1.24
COL1A1-205ENST00000476387 CAMKK2Q96RR4 588 aa22.77■■□□□ 1.24
COL1A1-205ENST00000476387 SLC12A5Q9H2X9 1139 aa22.77■■□□□ 1.24
COL1A1-205ENST00000476387 USP47Q96K76 1375 aa22.76■■□□□ 1.23
COL1A1-205ENST00000476387 ST20-MTHFSA0A0A6YYL1 179 aa22.76■■□□□ 1.23
COL1A1-205ENST00000476387 SOX12O15370 315 aa22.76■■□□□ 1.23
COL1A1-205ENST00000476387 APBA3O96018 575 aa22.76■■□□□ 1.23
COL1A1-205ENST00000476387 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.76■■□□□ 1.23
COL1A1-205ENST00000476387 TESK2Q96S53 571 aa22.76■■□□□ 1.23
COL1A1-205ENST00000476387 CDCA7Q9BWT1 371 aaPredicted RBP22.76■■□□□ 1.23
COL1A1-205ENST00000476387 TERF2IPQ9NYB0 399 aa22.76■■□□□ 1.23
COL1A1-205ENST00000476387 NINLQ9Y2I6 1382 aa22.76■■□□□ 1.23
COL1A1-205ENST00000476387 EZH2Q15910 746 aaKnown RBP22.75■■□□□ 1.23
COL1A1-205ENST00000476387 OVOS2A0A0G2JMS6 1433 aa22.74■■□□□ 1.23
COL1A1-205ENST00000476387 OVOS2A0A0J9YW53 1432 aa22.74■■□□□ 1.23
COL1A1-205ENST00000476387 OVOS2Q6IE36 1432 aa22.74■■□□□ 1.23
COL1A1-205ENST00000476387 CARD10Q9BWT7 1032 aa22.74■■□□□ 1.23
COL1A1-205ENST00000476387 LRP5O75197 1615 aa22.74■■□□□ 1.23
COL1A1-205ENST00000476387 LRRC37A3O60309 1634 aa22.73■■□□□ 1.23
COL1A1-205ENST00000476387 PSDA5PKW4 1024 aaPredicted RBP22.73■■□□□ 1.23
COL1A1-205ENST00000476387 DDB1Q16531 1140 aa22.73■■□□□ 1.23
COL1A1-205ENST00000476387 NME9Q86XW9 330 aa22.73■■□□□ 1.23
COL1A1-205ENST00000476387 A0A1W2PP64 1363 aa22.73■■□□□ 1.23
COL1A1-205ENST00000476387 CSB-PGBD3P0DP91 1061 aa22.72■■□□□ 1.23
COL1A1-205ENST00000476387 WNK3Q9BYP7 1800 aa22.72■■□□□ 1.23
COL1A1-205ENST00000476387 PEAK1Q9H792 1746 aa22.71■■□□□ 1.23
COL1A1-205ENST00000476387 RGPD5Q99666 1765 aa22.71■■□□□ 1.23
COL1A1-205ENST00000476387 CCDC7Q96M83 1385 aa22.69■■□□□ 1.22
COL1A1-205ENST00000476387 BCL9O00512 1426 aa22.68■■□□□ 1.22
COL1A1-205ENST00000476387 R3HDM1Q15032 1099 aaKnown RBP22.68■■□□□ 1.22
COL1A1-205ENST00000476387 RREB1Q92766 1687 aa22.68■■□□□ 1.22
COL1A1-205ENST00000476387 ERBB3P21860 1342 aa22.66■■□□□ 1.22
COL1A1-205ENST00000476387 TMF1P82094 1093 aa22.65■■□□□ 1.22
COL1A1-205ENST00000476387 LTN1O94822 1766 aa22.64■■□□□ 1.22
COL1A1-205ENST00000476387 MARCH10Q8NA82 808 aaPredicted RBP22.64■■□□□ 1.21
COL1A1-205ENST00000476387 SBF2Q86WG5 1849 aa22.64■■□□□ 1.21
COL1A1-205ENST00000476387 NUP188Q5SRE5 1749 aa22.63■■□□□ 1.21
COL1A1-205ENST00000476387 EXOC5O00471 708 aa22.63■■□□□ 1.21
COL1A1-205ENST00000476387 BCL11BQ9C0K0 894 aaPredicted RBP22.63■■□□□ 1.21
COL1A1-205ENST00000476387 RGPD3A6NKT7 1758 aaPredicted RBP22.63■■□□□ 1.21
COL1A1-205ENST00000476387 RGPD4Q7Z3J3 1758 aa22.63■■□□□ 1.21
COL1A1-205ENST00000476387 PLSCR1O15162 318 aa22.62■■□□□ 1.21
COL1A1-205ENST00000476387 NBPF14Q5TI25 921 aa22.62■■□□□ 1.21
COL1A1-205ENST00000476387 ANKRD36BQ8N2N9 1353 aa22.62■■□□□ 1.21
COL1A1-205ENST00000476387 TNS2Q63HR2 1409 aa22.61■■□□□ 1.21
COL1A1-205ENST00000476387 CDCA8Q53HL2 280 aa22.6■■□□□ 1.21
COL1A1-205ENST00000476387 ANKRD24Q8TF21 1146 aa22.6■■□□□ 1.21
COL1A1-205ENST00000476387 NLRP2Q9NX02 1062 aa22.6■■□□□ 1.21
COL1A1-205ENST00000476387 COG3Q96JB2 828 aa22.59■■□□□ 1.21
COL1A1-205ENST00000476387 IP6K1Q92551 441 aa22.58■■□□□ 1.21
COL1A1-205ENST00000476387 MYOM1P52179 1685 aa22.57■■□□□ 1.2
COL1A1-205ENST00000476387 IL2RBP14784 551 aa22.56■■□□□ 1.2
COL1A1-205ENST00000476387 PTF1AQ7RTS3 328 aa22.55■■□□□ 1.2
COL1A1-205ENST00000476387 FAM208AQ9UK61 1670 aaKnown RBP22.53■■□□□ 1.2
COL1A1-205ENST00000476387 MAP3K19Q56UN5 1328 aa22.53■■□□□ 1.2
COL1A1-205ENST00000476387 KIF20BQ96Q89 1820 aa22.52■■□□□ 1.2
COL1A1-205ENST00000476387 EIF4G2P78344 907 aaKnown RBP eCLIP22.52■■□□□ 1.2
COL1A1-205ENST00000476387 FYB1O15117 783 aa22.5■■□□□ 1.19
COL1A1-205ENST00000476387 HOXC9P31274 260 aa22.5■■□□□ 1.19
COL1A1-205ENST00000476387 RTL1A6NKG5 1358 aa22.5■■□□□ 1.19
COL1A1-205ENST00000476387 AMPHP49418 695 aa22.49■■□□□ 1.19
COL1A1-205ENST00000476387 NHSQ6T4R5 1651 aa22.49■■□□□ 1.19
COL1A1-205ENST00000476387 PROM2Q8N271 834 aa22.48■■□□□ 1.19
COL1A1-205ENST00000476387 LTV1Q96GA3 475 aaPredicted RBP22.47■■□□□ 1.19
COL1A1-205ENST00000476387 KCNQ2O43526 872 aa22.46■■□□□ 1.19
COL1A1-205ENST00000476387 HSPA5P11021 654 aaKnown RBP22.46■■□□□ 1.19
COL1A1-205ENST00000476387 GGNBP2Q9H3C7 697 aa22.46■■□□□ 1.19
COL1A1-205ENST00000476387 ANO8Q9HCE9 1232 aaPredicted RBP22.46■■□□□ 1.19
COL1A1-205ENST00000476387 FBLN1P23142 703 aa22.45■■□□□ 1.18
COL1A1-205ENST00000476387 TXNRD1Q16881 649 aa22.45■■□□□ 1.18
COL1A1-205ENST00000476387 POLR3GLQ9BT43 218 aa22.44■■□□□ 1.18
COL1A1-205ENST00000476387 SPON1Q9HCB6 807 aa22.44■■□□□ 1.18
COL1A1-205ENST00000476387 ACSBG1Q96GR2 724 aa22.43■■□□□ 1.18
COL1A1-205ENST00000476387 RRS1Q15050 365 aaKnown RBP22.42■■□□□ 1.18
COL1A1-205ENST00000476387 KIF24Q5T7B8 1368 aa22.41■■□□□ 1.18
COL1A1-205ENST00000476387 CARD14Q9BXL6 1004 aa22.41■■□□□ 1.18
COL1A1-205ENST00000476387 SMG6Q86US8 1419 aaKnown RBP22.4■■□□□ 1.18
COL1A1-205ENST00000476387 STK32BQ9NY57 414 aa22.4■■□□□ 1.18
COL1A1-205ENST00000476387 NSD3Q9BZ95 1437 aa22.4■■□□□ 1.18
COL1A1-205ENST00000476387 DDX54Q8TDD1 881 aaKnown RBP22.39■■□□□ 1.17
COL1A1-205ENST00000476387 CASZ1Q86V15 1759 aa22.39■■□□□ 1.17
COL1A1-205ENST00000476387 INSRP06213 1382 aa22.38■■□□□ 1.17
COL1A1-205ENST00000476387 KAT6BQ8WYB5 2073 aa22.38■■□□□ 1.17
COL1A1-205ENST00000476387 BTAF1O14981 1849 aa22.38■■□□□ 1.17
COL1A1-205ENST00000476387 FLT4P35916 1363 aa22.38■■□□□ 1.17
COL1A1-205ENST00000476387 CGNL1Q0VF96 1302 aa22.37■■□□□ 1.17
COL1A1-205ENST00000476387 SLC15A2Q16348 729 aa22.37■■□□□ 1.17
COL1A1-205ENST00000476387 MEGF6O75095 1541 aa22.36■■□□□ 1.17
COL1A1-205ENST00000476387 RGPD2P0DJD1 1756 aa22.36■■□□□ 1.17
COL1A1-205ENST00000476387 NBPF6Q5VWK0 638 aa22.36■■□□□ 1.17
COL1A1-205ENST00000476387 ZCRB1Q8TBF4 217 aaKnown RBP22.36■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms