RNA–Protein interactions for RNA: ENST00000473295.2

SCN1A-205, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 544 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-205ENST00000473295 CCDC116Q8IYX3 515 aa7.56□□□□□ -1.2
SCN1A-205ENST00000473295 ITPKCQ96DU7 683 aa7.56□□□□□ -1.2
SCN1A-205ENST00000473295 DHX9Q08211 1270 aaKnown RBP7.55□□□□□ -1.2
SCN1A-205ENST00000473295 NXF1Q9UBU9 619 aaKnown RBP7.55□□□□□ -1.2
SCN1A-205ENST00000473295 PURBQ96QR8 312 aaKnown RBP7.54□□□□□ -1.2
SCN1A-205ENST00000473295 ZFAND3Q9H8U3 227 aa7.54□□□□□ -1.2
SCN1A-205ENST00000473295 PGPEP1Q9NXJ5 209 aa7.54□□□□□ -1.2
SCN1A-205ENST00000473295 MEIOBQ8N635 442 aa7.53□□□□□ -1.2
SCN1A-205ENST00000473295 IL27Q8NEV9 243 aa7.53□□□□□ -1.2
SCN1A-205ENST00000473295 BRPF1P55201 1214 aaPredicted RBP7.52□□□□□ -1.21
SCN1A-205ENST00000473295 NBPF20Q3BBV1 942 aa7.52□□□□□ -1.21
SCN1A-205ENST00000473295 LINC00528Q8N1L1 170 aa7.52□□□□□ -1.21
SCN1A-205ENST00000473295 TRIM52Q96A61 297 aa7.52□□□□□ -1.21
SCN1A-205ENST00000473295 KCTD15Q96SI1 283 aaPredicted RBP7.52□□□□□ -1.21
SCN1A-205ENST00000473295 WIPF1O43516 503 aa7.51□□□□□ -1.21
SCN1A-205ENST00000473295 INSM1Q01101 510 aaPredicted RBP7.51□□□□□ -1.21
SCN1A-205ENST00000473295 ADAM32Q8TC27 787 aa7.51□□□□□ -1.21
SCN1A-205ENST00000473295 TSEN34Q9BSV6 310 aaKnown RBP7.51□□□□□ -1.21
SCN1A-205ENST00000473295 BMP2P12643 396 aa7.5□□□□□ -1.21
SCN1A-205ENST00000473295 C6orf118Q5T5N4 469 aa7.5□□□□□ -1.21
SCN1A-205ENST00000473295 PPP1R26Q5T8A7 1209 aaPredicted RBP7.5□□□□□ -1.21
SCN1A-205ENST00000473295 HMX1Q9NP08 348 aaPredicted RBP7.5□□□□□ -1.21
SCN1A-205ENST00000473295 TPRNQ4KMQ1 711 aa7.49□□□□□ -1.21
SCN1A-205ENST00000473295 EPS8L1Q8TE68 723 aa7.49□□□□□ -1.21
SCN1A-205ENST00000473295 IRF7Q92985 503 aa7.49□□□□□ -1.21
SCN1A-205ENST00000473295 APBB1O00213 710 aa7.48□□□□□ -1.21
SCN1A-205ENST00000473295 SOCS7O14512 581 aa7.48□□□□□ -1.21
SCN1A-205ENST00000473295 MAN1A2O60476 641 aa7.48□□□□□ -1.21
SCN1A-205ENST00000473295 DZIP3Q86Y13 1208 aaKnown RBP7.48□□□□□ -1.21
SCN1A-205ENST00000473295 BANK1Q8NDB2 785 aa7.48□□□□□ -1.21
SCN1A-205ENST00000473295 INTS6LQ5JSJ4 861 aaKnown RBP7.47□□□□□ -1.21
SCN1A-205ENST00000473295 Q6ZVU0 165 aa7.47□□□□□ -1.21
SCN1A-205ENST00000473295 ZNF592Q92610 1267 aa7.47□□□□□ -1.21
SCN1A-205ENST00000473295 OCSTAMPQ9BR26 566 aa7.47□□□□□ -1.21
SCN1A-205ENST00000473295 H3BM21 787 aa7.46□□□□□ -1.22
SCN1A-205ENST00000473295 SEPT12Q8IYM1 358 aa7.46□□□□□ -1.22
SCN1A-205ENST00000473295 TRIM34Q9BYJ4 488 aa7.46□□□□□ -1.22
SCN1A-205ENST00000473295 ZBBXA8MT70 800 aa7.45□□□□□ -1.22
SCN1A-205ENST00000473295 CCDC125Q86Z20 511 aa7.45□□□□□ -1.22
SCN1A-205ENST00000473295 SOS2Q07890 1332 aaPredicted RBP7.45□□□□□ -1.22
SCN1A-205ENST00000473295 MCCD1P59942 119 aaPredicted RBP7.44□□□□□ -1.22
SCN1A-205ENST00000473295 ZNF800Q2TB10 664 aaPredicted RBP eCLIP7.44□□□□□ -1.22
SCN1A-205ENST00000473295 STK17AQ9UEE5 414 aa7.44□□□□□ -1.22
SCN1A-205ENST00000473295 ZNF330Q9Y3S2 320 aaPredicted RBP7.44□□□□□ -1.22
SCN1A-205ENST00000473295 TTLL8A6PVC2 850 aa7.43□□□□□ -1.22
SCN1A-205ENST00000473295 SPINT1O43278 529 aa7.43□□□□□ -1.22
SCN1A-205ENST00000473295 CBLBQ13191 982 aa7.43□□□□□ -1.22
SCN1A-205ENST00000473295 GJD4Q96KN9 370 aaPredicted RBP7.43□□□□□ -1.22
SCN1A-205ENST00000473295 SOBPA7XYQ1 873 aa7.42□□□□□ -1.22
SCN1A-205ENST00000473295 ESPNB1AK53 854 aa7.42□□□□□ -1.22
SCN1A-205ENST00000473295 FAM181BA6NEQ2 426 aa7.41□□□□□ -1.22
SCN1A-205ENST00000473295 DNMT3LQ9UJW3 386 aa7.41□□□□□ -1.22
SCN1A-205ENST00000473295 NDUFB9Q9Y6M9 179 aa7.41□□□□□ -1.22
SCN1A-205ENST00000473295 VSIG8P0DPA2 414 aa7.4□□□□□ -1.22
SCN1A-205ENST00000473295 GMPRP36959 345 aa7.4□□□□□ -1.22
SCN1A-205ENST00000473295 VEGFBP49765 207 aa7.4□□□□□ -1.22
SCN1A-205ENST00000473295 RAB15P59190 212 aa7.4□□□□□ -1.22
SCN1A-205ENST00000473295 LCE2CQ5TA81 110 aa7.4□□□□□ -1.22
SCN1A-205ENST00000473295 RNF20Q5VTR2 975 aa7.4□□□□□ -1.22
SCN1A-205ENST00000473295 PRM3Q9NNZ6 103 aa7.4□□□□□ -1.22
SCN1A-205ENST00000473295 PCDHB9Q9Y5E1 797 aa7.4□□□□□ -1.22
SCN1A-205ENST00000473295 ERVH48-1M5A8F1 160 aa7.39□□□□□ -1.23
SCN1A-205ENST00000473295 ADH1AP07327 375 aa7.39□□□□□ -1.23
SCN1A-205ENST00000473295 FBXO45P0C2W1 286 aa7.39□□□□□ -1.23
SCN1A-205ENST00000473295 NR1H3Q13133 447 aa7.39□□□□□ -1.23
SCN1A-205ENST00000473295 ZNF784Q8NCA9 323 aaPredicted RBP7.39□□□□□ -1.23
SCN1A-205ENST00000473295 TMPRSS4Q9NRS4 437 aa7.39□□□□□ -1.23
SCN1A-205ENST00000473295 PPFIA3O75145 1194 aa7.38□□□□□ -1.23
SCN1A-205ENST00000473295 RELBQ01201 579 aa7.38□□□□□ -1.23
SCN1A-205ENST00000473295 ERBB4Q15303 1308 aa7.37□□□□□ -1.23
SCN1A-205ENST00000473295 POLMQ9NP87 494 aaPredicted RBP7.37□□□□□ -1.23
SCN1A-205ENST00000473295 FIGNL2A6NMB9 653 aa7.36□□□□□ -1.23
SCN1A-205ENST00000473295 MTMR14Q8NCE2 650 aa7.36□□□□□ -1.23
SCN1A-205ENST00000473295 AGBL1Q96MI9 1066 aa7.36□□□□□ -1.23
SCN1A-205ENST00000473295 LILRA1O75019 489 aa7.35□□□□□ -1.23
SCN1A-205ENST00000473295 PTGIRP43119 386 aa7.35□□□□□ -1.23
SCN1A-205ENST00000473295 PTSQ03393 145 aa7.35□□□□□ -1.23
SCN1A-205ENST00000473295 ZSCAN1Q8NBB4 408 aa7.35□□□□□ -1.23
SCN1A-205ENST00000473295 INSM2Q96T92 566 aaPredicted RBP7.35□□□□□ -1.23
SCN1A-205ENST00000473295 GIGYF1O75420 1035 aaPredicted RBP7.34□□□□□ -1.23
SCN1A-205ENST00000473295 ZNF395Q9H8N7 513 aaPredicted RBP7.34□□□□□ -1.23
SCN1A-205ENST00000473295 ADD1P35611 737 aaKnown RBP7.33□□□□□ -1.24
SCN1A-205ENST00000473295 CTSOP43234 321 aaPredicted RBP7.33□□□□□ -1.24
SCN1A-205ENST00000473295 CC2D2BQ6DHV5 1058 aa7.33□□□□□ -1.24
SCN1A-205ENST00000473295 CYLDQ9NQC7 956 aa7.33□□□□□ -1.24
SCN1A-205ENST00000473295 SNRKQ9NRH2 765 aa7.33□□□□□ -1.24
SCN1A-205ENST00000473295 SLC35F4A4IF30 521 aa7.32□□□□□ -1.24
SCN1A-205ENST00000473295 ATP5J2-PTCD1G3V325 749 aa7.32□□□□□ -1.24
SCN1A-205ENST00000473295 ERVK-9P63128 1117 aa7.32□□□□□ -1.24
SCN1A-205ENST00000473295 CCDC155Q8N6L0 562 aa7.32□□□□□ -1.24
SCN1A-205ENST00000473295 RNF217Q8TC41 542 aa7.32□□□□□ -1.24
SCN1A-205ENST00000473295 NANOS1Q8WY41 292 aaKnown RBP7.32□□□□□ -1.24
SCN1A-205ENST00000473295 ESF1Q9H501 851 aaKnown RBP7.32□□□□□ -1.24
SCN1A-205ENST00000473295 GPC1P35052 558 aa7.31□□□□□ -1.24
SCN1A-205ENST00000473295 LYSMD3Q7Z3D4 306 aa7.31□□□□□ -1.24
SCN1A-205ENST00000473295 CYP2U1Q7Z449 544 aa7.31□□□□□ -1.24
SCN1A-205ENST00000473295 GPR37L1O60883 481 aa7.3□□□□□ -1.24
SCN1A-205ENST00000473295 RNF144AP50876 292 aaPredicted RBP7.3□□□□□ -1.24
SCN1A-205ENST00000473295 FOXD4L5Q5VV16 416 aaPredicted RBP7.3□□□□□ -1.24
SCN1A-205ENST00000473295 ITGA6P23229 1130 aa7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 248.6 ms