RNA–Protein interactions for RNA: ENST00000468300.5

BRCA1-208, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best) BASIC

Gene BRCA1, Length 3,273 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-208ENST00000468300 NHSL1Q5SYE7 1610 aa10.96□□□□□ -0.65
BRCA1-208ENST00000468300 NEFLP07196 543 aa10.96□□□□□ -0.66
BRCA1-208ENST00000468300 RUNDC1Q96C34 613 aa10.96□□□□□ -0.66
BRCA1-208ENST00000468300 RSPH6AQ9H0K4 717 aa10.96□□□□□ -0.66
BRCA1-208ENST00000468300 SPINK5Q9NQ38 1064 aaPredicted RBP10.96□□□□□ -0.66
BRCA1-208ENST00000468300 USP19O94966 1318 aa10.96□□□□□ -0.66
BRCA1-208ENST00000468300 PPM1GO15355 546 aaPredicted RBP10.96□□□□□ -0.66
BRCA1-208ENST00000468300 SBNO1A3KN83 1393 aa10.95□□□□□ -0.66
BRCA1-208ENST00000468300 U2AF1L5P0DN76 240 aaPredicted RBP10.95□□□□□ -0.66
BRCA1-208ENST00000468300 U2AF1Q01081 240 aaKnown RBP eCLIP10.95□□□□□ -0.66
BRCA1-208ENST00000468300 EIF4A2Q14240 407 aaKnown RBP10.95□□□□□ -0.66
BRCA1-208ENST00000468300 HSP90AB2PQ58FF8 381 aa10.95□□□□□ -0.66
BRCA1-208ENST00000468300 BRINP3Q76B58 766 aa10.95□□□□□ -0.66
BRCA1-208ENST00000468300 TRMT2AQ8IZ69 625 aaKnown RBP10.95□□□□□ -0.66
BRCA1-208ENST00000468300 NUDCQ9Y266 331 aa10.95□□□□□ -0.66
BRCA1-208ENST00000468300 DLG5Q8TDM6 1919 aa10.95□□□□□ -0.66
BRCA1-208ENST00000468300 PAK3O75914 559 aaPredicted RBP10.95□□□□□ -0.66
BRCA1-208ENST00000468300 KRT28Q7Z3Y7 464 aa10.95□□□□□ -0.66
BRCA1-208ENST00000468300 TCP11L2Q8N4U5 519 aa10.94□□□□□ -0.66
BRCA1-208ENST00000468300 CHMP4AQ9BY43 222 aa10.94□□□□□ -0.66
BRCA1-208ENST00000468300 RGPD2P0DJD1 1756 aa10.94□□□□□ -0.66
BRCA1-208ENST00000468300 COL18A1P39060 1754 aa10.94□□□□□ -0.66
BRCA1-208ENST00000468300 RGPD5Q99666 1765 aa10.94□□□□□ -0.66
BRCA1-208ENST00000468300 PDE3BQ13370 1112 aa10.93□□□□□ -0.66
BRCA1-208ENST00000468300 ABCA3Q99758 1704 aa10.93□□□□□ -0.66
BRCA1-208ENST00000468300 U2SURPO15042 1029 aaKnown RBP10.93□□□□□ -0.66
BRCA1-208ENST00000468300 SOX12O15370 315 aa10.93□□□□□ -0.66
BRCA1-208ENST00000468300 WWC1Q8IX03 1113 aa10.93□□□□□ -0.66
BRCA1-208ENST00000468300 SLAIN2Q9P270 581 aa10.93□□□□□ -0.66
BRCA1-208ENST00000468300 FLT4P35916 1363 aa10.93□□□□□ -0.66
BRCA1-208ENST00000468300 KIF24Q5T7B8 1368 aa10.93□□□□□ -0.66
BRCA1-208ENST00000468300 RNF123Q5XPI4 1314 aa10.92□□□□□ -0.66
BRCA1-208ENST00000468300 FCHSD2O94868 740 aa10.92□□□□□ -0.66
BRCA1-208ENST00000468300 DUSP27Q5VZP5 1158 aa10.92□□□□□ -0.66
BRCA1-208ENST00000468300 PHACTR3Q96KR7 559 aa10.92□□□□□ -0.66
BRCA1-208ENST00000468300 RRP7AQ9Y3A4 280 aaKnown RBP10.92□□□□□ -0.66
BRCA1-208ENST00000468300 CAMTA1Q9Y6Y1 1673 aa10.92□□□□□ -0.66
BRCA1-208ENST00000468300 HOXC9P31274 260 aa10.92□□□□□ -0.66
BRCA1-208ENST00000468300 CCDC27Q2M243 656 aa10.92□□□□□ -0.66
BRCA1-208ENST00000468300 TRIM35Q9UPQ4 493 aa10.92□□□□□ -0.66
BRCA1-208ENST00000468300 SUPT16HQ9Y5B9 1047 aaKnown RBP10.92□□□□□ -0.66
BRCA1-208ENST00000468300 TNS3Q68CZ2 1445 aa10.91□□□□□ -0.66
BRCA1-208ENST00000468300 SLFN5Q08AF3 891 aa10.91□□□□□ -0.66
BRCA1-208ENST00000468300 RTL1A6NKG5 1358 aa10.91□□□□□ -0.66
BRCA1-208ENST00000468300 LMO7Q8WWI1 1683 aa10.91□□□□□ -0.66
BRCA1-208ENST00000468300 HMOX1P09601 288 aa10.9□□□□□ -0.66
BRCA1-208ENST00000468300 AEBP1Q8IUX7 1158 aa10.9□□□□□ -0.66
BRCA1-208ENST00000468300 ROBO1Q9Y6N7 1651 aa10.9□□□□□ -0.66
BRCA1-208ENST00000468300 SOS2Q07890 1332 aaPredicted RBP10.9□□□□□ -0.66
BRCA1-208ENST00000468300 KDRP35968 1356 aa10.9□□□□□ -0.66
BRCA1-208ENST00000468300 SPATA31A3Q5VYP0 1347 aa10.9□□□□□ -0.66
BRCA1-208ENST00000468300 NPHP3Q7Z494 1330 aa10.9□□□□□ -0.66
BRCA1-208ENST00000468300 GCP02774 474 aa10.9□□□□□ -0.67
BRCA1-208ENST00000468300 PRKAR2BP31323 418 aa10.9□□□□□ -0.67
BRCA1-208ENST00000468300 TMPOP42166 694 aaKnown RBP10.9□□□□□ -0.67
BRCA1-208ENST00000468300 NGEFQ8N5V2 710 aa10.9□□□□□ -0.67
BRCA1-208ENST00000468300 ARHGEF10O15013 1369 aa10.89□□□□□ -0.67
BRCA1-208ENST00000468300 ARHGEF25Q86VW2 580 aa10.89□□□□□ -0.67
BRCA1-208ENST00000468300 IGSF1Q8N6C5 1336 aa10.89□□□□□ -0.67
BRCA1-208ENST00000468300 NCAPD2Q15021 1401 aa10.89□□□□□ -0.67
BRCA1-208ENST00000468300 GOLGA2Q08379 1002 aa10.88□□□□□ -0.67
BRCA1-208ENST00000468300 IP6K1Q92551 441 aa10.88□□□□□ -0.67
BRCA1-208ENST00000468300 EYA1Q99502 592 aa10.88□□□□□ -0.67
BRCA1-208ENST00000468300 BCL11BQ9C0K0 894 aaPredicted RBP10.88□□□□□ -0.67
BRCA1-208ENST00000468300 NEUROD2Q15784 382 aa10.87□□□□□ -0.67
BRCA1-208ENST00000468300 KCNH5Q8NCM2 988 aa10.87□□□□□ -0.67
BRCA1-208ENST00000468300 AXIN2Q9Y2T1 843 aa10.87□□□□□ -0.67
BRCA1-208ENST00000468300 AHDC1Q5TGY3 1603 aaPredicted RBP10.87□□□□□ -0.67
BRCA1-208ENST00000468300 AMPHP49418 695 aa10.87□□□□□ -0.67
BRCA1-208ENST00000468300 SULT6B1Q6IMI4 303 aa10.86□□□□□ -0.67
BRCA1-208ENST00000468300 WDR63Q8IWG1 891 aa10.86□□□□□ -0.67
BRCA1-208ENST00000468300 FAM208AQ9UK61 1670 aaKnown RBP10.86□□□□□ -0.67
BRCA1-208ENST00000468300 ABCC6O95255 1503 aa10.85□□□□□ -0.67
BRCA1-208ENST00000468300 CABLES1Q8TDN4 633 aa10.85□□□□□ -0.67
BRCA1-208ENST00000468300 COL22A1Q8NFW1 1626 aaPredicted RBP10.85□□□□□ -0.67
BRCA1-208ENST00000468300 NFE2L2Q16236 605 aa10.85□□□□□ -0.67
BRCA1-208ENST00000468300 E9PSI1 815 aa10.84□□□□□ -0.67
BRCA1-208ENST00000468300 RIPK4P57078 832 aa10.84□□□□□ -0.67
BRCA1-208ENST00000468300 LRRC37A3O60309 1634 aa10.84□□□□□ -0.67
BRCA1-208ENST00000468300 PNNQ9H307 717 aaKnown RBP10.84□□□□□ -0.67
BRCA1-208ENST00000468300 NBPF6Q5VWK0 638 aa10.83□□□□□ -0.67
BRCA1-208ENST00000468300 NBPF4Q96M43 638 aa10.83□□□□□ -0.67
BRCA1-208ENST00000468300 CPDO75976 1380 aa10.83□□□□□ -0.68
BRCA1-208ENST00000468300 FKBP8Q14318 412 aa10.83□□□□□ -0.68
BRCA1-208ENST00000468300 LMOD2Q6P5Q4 547 aa10.83□□□□□ -0.68
BRCA1-208ENST00000468300 RCAN3Q9UKA8 241 aa10.83□□□□□ -0.68
BRCA1-208ENST00000468300 MAPK8IP3Q9UPT6 1336 aa10.83□□□□□ -0.68
BRCA1-208ENST00000468300 COL16A1Q07092 1604 aaPredicted RBP10.83□□□□□ -0.68
BRCA1-208ENST00000468300 IRX6P78412 446 aaPredicted RBP10.82□□□□□ -0.68
BRCA1-208ENST00000468300 VIRMAQ69YN4 1812 aaKnown RBP10.81□□□□□ -0.68
BRCA1-208ENST00000468300 IL16Q14005 1332 aa10.81□□□□□ -0.68
BRCA1-208ENST00000468300 FAM83GA6ND36 823 aa10.81□□□□□ -0.68
BRCA1-208ENST00000468300 ZC3H6P61129 1189 aaKnown RBP10.81□□□□□ -0.68
BRCA1-208ENST00000468300 LRRC59Q96AG4 307 aaKnown RBP10.81□□□□□ -0.68
BRCA1-208ENST00000468300 MTHFSDQ2M296 383 aaKnown RBP10.81□□□□□ -0.68
BRCA1-208ENST00000468300 USHBP1Q8N6Y0 703 aa10.81□□□□□ -0.68
BRCA1-208ENST00000468300 THUMPD2Q9BTF0 503 aaKnown RBP10.81□□□□□ -0.68
BRCA1-208ENST00000468300 KIAA0232Q92628 1395 aa10.8□□□□□ -0.68
BRCA1-208ENST00000468300 ZNF853P0CG23 659 aa10.8□□□□□ -0.68
BRCA1-208ENST00000468300 LTV1Q96GA3 475 aaPredicted RBP10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 80.8 ms