RNA–Protein interactions for RNA: ENST00000466532.1

COL9A3-206, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 539 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-206ENST00000466532 NFAT5O94916 1531 aa27.22■■□□□ 1.95
COL9A3-206ENST00000466532 NUP188Q5SRE5 1749 aa27.22■■□□□ 1.95
COL9A3-206ENST00000466532 SOX12O15370 315 aa27.22■■□□□ 1.95
COL9A3-206ENST00000466532 LTN1O94822 1766 aa27.22■■□□□ 1.95
COL9A3-206ENST00000466532 TOM1L2Q6ZVM7 507 aa27.21■■□□□ 1.95
COL9A3-206ENST00000466532 CAMKK2Q96RR4 588 aa27.21■■□□□ 1.95
COL9A3-206ENST00000466532 AXIN2Q9Y2T1 843 aa27.21■■□□□ 1.95
COL9A3-206ENST00000466532 ARHGEF25Q86VW2 580 aa27.2■■□□□ 1.94
COL9A3-206ENST00000466532 WDR17Q8IZU2 1322 aa27.19■■□□□ 1.94
COL9A3-206ENST00000466532 PARD3Q8TEW0 1356 aa27.19■■□□□ 1.94
COL9A3-206ENST00000466532 CD163L1Q9NR16 1453 aa27.19■■□□□ 1.94
COL9A3-206ENST00000466532 R3HDM1Q15032 1099 aaKnown RBP27.18■■□□□ 1.94
COL9A3-206ENST00000466532 OVOS2A0A0G2JMS6 1433 aa27.16■■□□□ 1.94
COL9A3-206ENST00000466532 OVOS2A0A0J9YW53 1432 aa27.16■■□□□ 1.94
COL9A3-206ENST00000466532 OVOS2Q6IE36 1432 aa27.16■■□□□ 1.94
COL9A3-206ENST00000466532 SUGP2Q8IX01 1082 aaKnown RBP eCLIP27.16■■□□□ 1.94
COL9A3-206ENST00000466532 TMC1Q8TDI8 760 aa27.16■■□□□ 1.94
COL9A3-206ENST00000466532 ABCC6O95255 1503 aa27.16■■□□□ 1.94
COL9A3-206ENST00000466532 DDB1Q16531 1140 aa27.15■■□□□ 1.94
COL9A3-206ENST00000466532 C11orf95C9JLR9 678 aaPredicted RBP27.14■■□□□ 1.94
COL9A3-206ENST00000466532 RGPD3A6NKT7 1758 aaPredicted RBP27.14■■□□□ 1.93
COL9A3-206ENST00000466532 RGPD4Q7Z3J3 1758 aa27.14■■□□□ 1.93
COL9A3-206ENST00000466532 CSB-PGBD3P0DP91 1061 aa27.13■■□□□ 1.93
COL9A3-206ENST00000466532 USP31Q70CQ4 1352 aa27.12■■□□□ 1.93
COL9A3-206ENST00000466532 HDGFL2Q7Z4V5 671 aaPredicted RBP27.12■■□□□ 1.93
COL9A3-206ENST00000466532 SLC12A5Q9H2X9 1139 aa27.11■■□□□ 1.93
COL9A3-206ENST00000466532 NME9Q86XW9 330 aa27.1■■□□□ 1.93
COL9A3-206ENST00000466532 CARD10Q9BWT7 1032 aa27.1■■□□□ 1.93
COL9A3-206ENST00000466532 EDC4Q6P2E9 1401 aaKnown RBP27.09■■□□□ 1.93
COL9A3-206ENST00000466532 TRIM26Q12899 539 aaPredicted RBP27.09■■□□□ 1.93
COL9A3-206ENST00000466532 CDCA7Q9BWT1 371 aaPredicted RBP27.09■■□□□ 1.93
COL9A3-206ENST00000466532 TERF2IPQ9NYB0 399 aa27.07■■□□□ 1.92
COL9A3-206ENST00000466532 A0A1W2PP64 1363 aa27.07■■□□□ 1.92
COL9A3-206ENST00000466532 PUS7Q96PZ0 661 aaKnown RBP27.06■■□□□ 1.92
COL9A3-206ENST00000466532 CCDC7Q96M83 1385 aa27.05■■□□□ 1.92
COL9A3-206ENST00000466532 ST20-MTHFSA0A0A6YYL1 179 aa27.04■■□□□ 1.92
COL9A3-206ENST00000466532 NBPF14Q5TI25 921 aa27.04■■□□□ 1.92
COL9A3-206ENST00000466532 MARCH10Q8NA82 808 aaPredicted RBP27.04■■□□□ 1.92
COL9A3-206ENST00000466532 TESK2Q96S53 571 aa27.03■■□□□ 1.92
COL9A3-206ENST00000466532 BCL9O00512 1426 aa27■■□□□ 1.91
COL9A3-206ENST00000466532 NINLQ9Y2I6 1382 aa27■■□□□ 1.91
COL9A3-206ENST00000466532 ERBB3P21860 1342 aa27■■□□□ 1.91
COL9A3-206ENST00000466532 BCL11BQ9C0K0 894 aaPredicted RBP27■■□□□ 1.91
COL9A3-206ENST00000466532 FAM208AQ9UK61 1670 aaKnown RBP26.99■■□□□ 1.91
COL9A3-206ENST00000466532 EXOC5O00471 708 aa26.99■■□□□ 1.91
COL9A3-206ENST00000466532 TNS2Q63HR2 1409 aa26.99■■□□□ 1.91
COL9A3-206ENST00000466532 PLSCR1O15162 318 aa26.98■■□□□ 1.91
COL9A3-206ENST00000466532 PTF1AQ7RTS3 328 aa26.98■■□□□ 1.91
COL9A3-206ENST00000466532 KAT6BQ8WYB5 2073 aa26.97■■□□□ 1.91
COL9A3-206ENST00000466532 SLC24A1O60721 1099 aa26.97■■□□□ 1.91
COL9A3-206ENST00000466532 NLRP2Q9NX02 1062 aa26.97■■□□□ 1.91
COL9A3-206ENST00000466532 NHSQ6T4R5 1651 aa26.97■■□□□ 1.91
COL9A3-206ENST00000466532 ANKRD24Q8TF21 1146 aa26.95■■□□□ 1.9
COL9A3-206ENST00000466532 RGPD2P0DJD1 1756 aa26.93■■□□□ 1.9
COL9A3-206ENST00000466532 IL2RBP14784 551 aa26.91■■□□□ 1.9
COL9A3-206ENST00000466532 USP47Q96K76 1375 aa26.91■■□□□ 1.9
COL9A3-206ENST00000466532 CASZ1Q86V15 1759 aa26.91■■□□□ 1.9
COL9A3-206ENST00000466532 BTAF1O14981 1849 aa26.9■■□□□ 1.9
COL9A3-206ENST00000466532 KIF20BQ96Q89 1820 aa26.9■■□□□ 1.9
COL9A3-206ENST00000466532 ANKRD36BQ8N2N9 1353 aa26.89■■□□□ 1.9
COL9A3-206ENST00000466532 COG3Q96JB2 828 aa26.89■■□□□ 1.9
COL9A3-206ENST00000466532 IP6K1Q92551 441 aa26.88■■□□□ 1.89
COL9A3-206ENST00000466532 TMF1P82094 1093 aa26.87■■□□□ 1.89
COL9A3-206ENST00000466532 ANO8Q9HCE9 1232 aaPredicted RBP26.87■■□□□ 1.89
COL9A3-206ENST00000466532 PROM2Q8N271 834 aa26.86■■□□□ 1.89
COL9A3-206ENST00000466532 KCNQ2O43526 872 aa26.85■■□□□ 1.89
COL9A3-206ENST00000466532 LTV1Q96GA3 475 aaPredicted RBP26.85■■□□□ 1.89
COL9A3-206ENST00000466532 SPON1Q9HCB6 807 aa26.84■■□□□ 1.89
COL9A3-206ENST00000466532 TXNRD1Q16881 649 aa26.83■■□□□ 1.89
COL9A3-206ENST00000466532 ACSBG1Q96GR2 724 aa26.83■■□□□ 1.89
COL9A3-206ENST00000466532 MAP3K19Q56UN5 1328 aa26.83■■□□□ 1.89
COL9A3-206ENST00000466532 MYOM1P52179 1685 aa26.82■■□□□ 1.88
COL9A3-206ENST00000466532 FBLN1P23142 703 aa26.81■■□□□ 1.88
COL9A3-206ENST00000466532 AMPHP49418 695 aa26.81■■□□□ 1.88
COL9A3-206ENST00000466532 SHANK3Q9BYB0 1731 aa26.81■■□□□ 1.88
COL9A3-206ENST00000466532 HOXC9P31274 260 aa26.8■■□□□ 1.88
COL9A3-206ENST00000466532 PPP1R1BQ9UD71 204 aaPredicted RBP26.79■■□□□ 1.88
COL9A3-206ENST00000466532 DOT1LQ8TEK3 1739 aa26.78■■□□□ 1.88
COL9A3-206ENST00000466532 CDCA8Q53HL2 280 aa26.77■■□□□ 1.88
COL9A3-206ENST00000466532 GGNBP2Q9H3C7 697 aa26.77■■□□□ 1.88
COL9A3-206ENST00000466532 STK32BQ9NY57 414 aa26.77■■□□□ 1.88
COL9A3-206ENST00000466532 RTL1A6NKG5 1358 aa26.76■■□□□ 1.87
COL9A3-206ENST00000466532 FYB1O15117 783 aa26.76■■□□□ 1.87
COL9A3-206ENST00000466532 PAPPAQ13219 1627 aa26.76■■□□□ 1.87
COL9A3-206ENST00000466532 PDGFDQ9GZP0 370 aaPredicted RBP26.75■■□□□ 1.87
COL9A3-206ENST00000466532 RRS1Q15050 365 aaKnown RBP26.74■■□□□ 1.87
COL9A3-206ENST00000466532 DDX54Q8TDD1 881 aaKnown RBP26.74■■□□□ 1.87
COL9A3-206ENST00000466532 SLC15A2Q16348 729 aa26.73■■□□□ 1.87
COL9A3-206ENST00000466532 TIMELESSQ9UNS1 1208 aa26.73■■□□□ 1.87
COL9A3-206ENST00000466532 ZBTB7AO95365 584 aa26.71■■□□□ 1.87
COL9A3-206ENST00000466532 PCGF6Q9BYE7 350 aa26.71■■□□□ 1.87
COL9A3-206ENST00000466532 MEGF6O75095 1541 aa26.7■■□□□ 1.87
COL9A3-206ENST00000466532 CLSPNQ9HAW4 1339 aa26.69■■□□□ 1.86
COL9A3-206ENST00000466532 SMG6Q86US8 1419 aaKnown RBP26.69■■□□□ 1.86
COL9A3-206ENST00000466532 LY75O60449 1722 aa26.68■■□□□ 1.86
COL9A3-206ENST00000466532 QSER1Q2KHR3 1735 aa26.68■■□□□ 1.86
COL9A3-206ENST00000466532 MAP2P11137 1827 aaKnown RBP26.67■■□□□ 1.86
COL9A3-206ENST00000466532 NBPF6Q5VWK0 638 aa26.66■■□□□ 1.86
COL9A3-206ENST00000466532 ZCRB1Q8TBF4 217 aaKnown RBP26.66■■□□□ 1.86
COL9A3-206ENST00000466532 NBPF4Q96M43 638 aa26.66■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 74.9 ms