RNA–Protein interactions for RNA: ENST00000463477.5

PTPRD-207, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 1 (best) BASIC

Gene PTPRD, Length 1,697 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-207ENST00000463477 SLIT3O75094 1523 aa13.2□□□□□ -0.3
PTPRD-207ENST00000463477 COL14A1Q05707 1796 aaKnown RBP13.2□□□□□ -0.3
PTPRD-207ENST00000463477 ARHGEF25Q86VW2 580 aa13.2□□□□□ -0.3
PTPRD-207ENST00000463477 ZRANB1Q9UGI0 708 aa13.2□□□□□ -0.3
PTPRD-207ENST00000463477 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.19□□□□□ -0.3
PTPRD-207ENST00000463477 NWD2Q9ULI1 1742 aa13.19□□□□□ -0.3
PTPRD-207ENST00000463477 PIK3C2AO00443 1686 aa13.19□□□□□ -0.3
PTPRD-207ENST00000463477 PHRF1Q9P1Y6 1649 aaKnown RBP13.19□□□□□ -0.3
PTPRD-207ENST00000463477 NRKQ7Z2Y5 1582 aa13.19□□□□□ -0.3
PTPRD-207ENST00000463477 BLMP54132 1417 aaPredicted RBP13.19□□□□□ -0.3
PTPRD-207ENST00000463477 AATKQ6ZMQ8 1374 aa13.18□□□□□ -0.3
PTPRD-207ENST00000463477 FYB1O15117 783 aa13.18□□□□□ -0.3
PTPRD-207ENST00000463477 EVA1CP58658 441 aa13.18□□□□□ -0.3
PTPRD-207ENST00000463477 CARD14Q9BXL6 1004 aa13.18□□□□□ -0.3
PTPRD-207ENST00000463477 PANK3Q9H999 370 aa13.18□□□□□ -0.3
PTPRD-207ENST00000463477 CCDC9Q9Y3X0 531 aaKnown RBP13.18□□□□□ -0.3
PTPRD-207ENST00000463477 PDE3BQ13370 1112 aa13.17□□□□□ -0.3
PTPRD-207ENST00000463477 PLCH1Q4KWH8 1693 aa13.16□□□□□ -0.3
PTPRD-207ENST00000463477 SPATA31A5Q5VU36 1347 aa13.16□□□□□ -0.3
PTPRD-207ENST00000463477 SPATA31A7Q8IWB4 1347 aa13.16□□□□□ -0.3
PTPRD-207ENST00000463477 COG3Q96JB2 828 aa13.16□□□□□ -0.3
PTPRD-207ENST00000463477 RGS12O14924 1447 aa13.16□□□□□ -0.3
PTPRD-207ENST00000463477 STRN4Q9NRL3 753 aa13.15□□□□□ -0.3
PTPRD-207ENST00000463477 AXIN2Q9Y2T1 843 aa13.15□□□□□ -0.3
PTPRD-207ENST00000463477 CAMTA1Q9Y6Y1 1673 aa13.15□□□□□ -0.3
PTPRD-207ENST00000463477 SOX12O15370 315 aa13.15□□□□□ -0.31
PTPRD-207ENST00000463477 OVOS2A0A0J9YW53 1432 aa13.14□□□□□ -0.31
PTPRD-207ENST00000463477 OVOS2Q6IE36 1432 aa13.14□□□□□ -0.31
PTPRD-207ENST00000463477 SPATA31A1Q5TZJ5 1347 aa13.14□□□□□ -0.31
PTPRD-207ENST00000463477 GLI3P10071 1580 aa13.14□□□□□ -0.31
PTPRD-207ENST00000463477 ZBTB7CA1YPR0 619 aa13.13□□□□□ -0.31
PTPRD-207ENST00000463477 MYT1Q01538 1121 aa13.13□□□□□ -0.31
PTPRD-207ENST00000463477 LARP1Q6PKG0 1096 aaKnown RBP13.13□□□□□ -0.31
PTPRD-207ENST00000463477 SEPT12Q8IYM1 358 aa13.13□□□□□ -0.31
PTPRD-207ENST00000463477 USP54Q70EL1 1684 aa13.13□□□□□ -0.31
PTPRD-207ENST00000463477 NRAPQ86VF7 1730 aa13.13□□□□□ -0.31
PTPRD-207ENST00000463477 LMO7Q8WWI1 1683 aa13.12□□□□□ -0.31
PTPRD-207ENST00000463477 GGNBP2Q9H3C7 697 aa13.12□□□□□ -0.31
PTPRD-207ENST00000463477 NFAT5O94916 1531 aa13.12□□□□□ -0.31
PTPRD-207ENST00000463477 IRX6P78412 446 aaPredicted RBP13.12□□□□□ -0.31
PTPRD-207ENST00000463477 FAM98CQ17RN3 349 aaKnown RBP13.12□□□□□ -0.31
PTPRD-207ENST00000463477 BARGINQ6ZT62 677 aa13.12□□□□□ -0.31
PTPRD-207ENST00000463477 THRAP3Q9Y2W1 955 aaKnown RBP13.12□□□□□ -0.31
PTPRD-207ENST00000463477 COL5A2P05997 1499 aaPredicted RBP13.11□□□□□ -0.31
PTPRD-207ENST00000463477 CNGB1Q14028 1251 aaPredicted RBP13.11□□□□□ -0.31
PTPRD-207ENST00000463477 AMER1Q5JTC6 1135 aaPredicted RBP13.11□□□□□ -0.31
PTPRD-207ENST00000463477 TCP11L2Q8N4U5 519 aa13.11□□□□□ -0.31
PTPRD-207ENST00000463477 KNSTRNQ9Y448 316 aa13.11□□□□□ -0.31
PTPRD-207ENST00000463477 CGNL1Q0VF96 1302 aa13.1□□□□□ -0.31
PTPRD-207ENST00000463477 NSD3Q9BZ95 1437 aa13.1□□□□□ -0.31
PTPRD-207ENST00000463477 COL18A1P39060 1754 aa13.1□□□□□ -0.31
PTPRD-207ENST00000463477 IP6K1Q92551 441 aa13.1□□□□□ -0.31
PTPRD-207ENST00000463477 UPF1Q92900 1129 aaKnown RBP eCLIP13.1□□□□□ -0.31
PTPRD-207ENST00000463477 WDR17Q8IZU2 1322 aa13.1□□□□□ -0.31
PTPRD-207ENST00000463477 USP35Q9P2H5 1018 aa13.09□□□□□ -0.31
PTPRD-207ENST00000463477 CRB1P82279 1406 aa13.09□□□□□ -0.31
PTPRD-207ENST00000463477 FBLN1P23142 703 aa13.08□□□□□ -0.31
PTPRD-207ENST00000463477 CC2D1BQ5T0F9 858 aaKnown RBP13.08□□□□□ -0.31
PTPRD-207ENST00000463477 TOM1L2Q6ZVM7 507 aa13.08□□□□□ -0.31
PTPRD-207ENST00000463477 RBM19Q9Y4C8 960 aaKnown RBP13.08□□□□□ -0.31
PTPRD-207ENST00000463477 ABCC6O95255 1503 aa13.08□□□□□ -0.31
PTPRD-207ENST00000463477 KRT27Q7Z3Y8 459 aa13.08□□□□□ -0.32
PTPRD-207ENST00000463477 CARD10Q9BWT7 1032 aa13.08□□□□□ -0.32
PTPRD-207ENST00000463477 MAP3K19Q56UN5 1328 aa13.07□□□□□ -0.32
PTPRD-207ENST00000463477 A0A0G2JS52 829 aa13.07□□□□□ -0.32
PTPRD-207ENST00000463477 ERBB3P21860 1342 aa13.07□□□□□ -0.32
PTPRD-207ENST00000463477 CSB-PGBD3P0DP91 1061 aa13.06□□□□□ -0.32
PTPRD-207ENST00000463477 PPP2R1AP30153 589 aa13.06□□□□□ -0.32
PTPRD-207ENST00000463477 AMPHP49418 695 aa13.06□□□□□ -0.32
PTPRD-207ENST00000463477 HOXC9P31274 260 aa13.05□□□□□ -0.32
PTPRD-207ENST00000463477 RRS1Q15050 365 aaKnown RBP13.05□□□□□ -0.32
PTPRD-207ENST00000463477 CCDC125Q86Z20 511 aa13.05□□□□□ -0.32
PTPRD-207ENST00000463477 ANKRD24Q8TF21 1146 aa13.05□□□□□ -0.32
PTPRD-207ENST00000463477 CDCA7Q9BWT1 371 aaPredicted RBP13.05□□□□□ -0.32
PTPRD-207ENST00000463477 KIF24Q5T7B8 1368 aa13.04□□□□□ -0.32
PTPRD-207ENST00000463477 EP400Q96L91 3159 aa13.04□□□□□ -0.32
PTPRD-207ENST00000463477 RTL1A6NKG5 1358 aa13.03□□□□□ -0.32
PTPRD-207ENST00000463477 NSD2O96028 1365 aa13.03□□□□□ -0.32
PTPRD-207ENST00000463477 RRP1P56182 461 aaKnown RBP13.02□□□□□ -0.32
PTPRD-207ENST00000463477 NLRP2Q9NX02 1062 aa13.02□□□□□ -0.32
PTPRD-207ENST00000463477 RCAN3Q9UKA8 241 aa13.02□□□□□ -0.32
PTPRD-207ENST00000463477 THSD7AQ9UPZ6 1657 aa13.02□□□□□ -0.33
PTPRD-207ENST00000463477 RGPD5Q99666 1765 aa13.02□□□□□ -0.33
PTPRD-207ENST00000463477 B4GALNT3Q6L9W6 998 aa13.02□□□□□ -0.33
PTPRD-207ENST00000463477 LTN1O94822 1766 aa13.01□□□□□ -0.33
PTPRD-207ENST00000463477 BRWD3Q6RI45 1802 aa13.01□□□□□ -0.33
PTPRD-207ENST00000463477 KIF20BQ96Q89 1820 aa13.01□□□□□ -0.33
PTPRD-207ENST00000463477 HSP90AB2PQ58FF8 381 aa13.01□□□□□ -0.33
PTPRD-207ENST00000463477 POLKQ9UBT6 870 aa13.01□□□□□ -0.33
PTPRD-207ENST00000463477 FANCIQ9NVI1 1328 aa13.01□□□□□ -0.33
PTPRD-207ENST00000463477 FLT4P35916 1363 aa13□□□□□ -0.33
PTPRD-207ENST00000463477 DDB1Q16531 1140 aa13□□□□□ -0.33
PTPRD-207ENST00000463477 FAM196AQ6ZSG2 479 aa13□□□□□ -0.33
PTPRD-207ENST00000463477 NGEFQ8N5V2 710 aa13□□□□□ -0.33
PTPRD-207ENST00000463477 LTV1Q96GA3 475 aaPredicted RBP13□□□□□ -0.33
PTPRD-207ENST00000463477 EMILIN1Q9Y6C2 1016 aa13□□□□□ -0.33
PTPRD-207ENST00000463477 EXOC5O00471 708 aa12.99□□□□□ -0.33
PTPRD-207ENST00000463477 WDR43Q15061 677 aaKnown RBP eCLIP12.99□□□□□ -0.33
PTPRD-207ENST00000463477 MORC1Q86VD1 984 aa12.99□□□□□ -0.33
PTPRD-207ENST00000463477 ADAMTS8Q9UP79 889 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 79.3 ms