RNA–Protein interactions for RNA: ENST00000454134.1

NCKIPSD-208, Transcript of NCK interacting protein with SH3 domain, humanhuman

TSL 3

Gene NCKIPSD, Length 998 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCKIPSD-208ENST00000454134 EDC4Q6P2E9 1401 aaKnown RBP23.13■■□□□ 1.29
NCKIPSD-208ENST00000454134 RGPD5Q99666 1765 aa23.12■■□□□ 1.29
NCKIPSD-208ENST00000454134 BAG6P46379 1132 aa23.12■■□□□ 1.29
NCKIPSD-208ENST00000454134 CLSPNQ9HAW4 1339 aa23.11■■□□□ 1.29
NCKIPSD-208ENST00000454134 RGPD1P0DJD0 1748 aa23.11■■□□□ 1.29
NCKIPSD-208ENST00000454134 WDR17Q8IZU2 1322 aa23.1■■□□□ 1.29
NCKIPSD-208ENST00000454134 SLC24A1O60721 1099 aa23.1■■□□□ 1.29
NCKIPSD-208ENST00000454134 TRIM37O94972 964 aa23.1■■□□□ 1.29
NCKIPSD-208ENST00000454134 FAM196AQ6ZSG2 479 aa23.1■■□□□ 1.29
NCKIPSD-208ENST00000454134 USP54Q70EL1 1684 aa23.09■■□□□ 1.29
NCKIPSD-208ENST00000454134 EN1Q05925 392 aaPredicted RBP23.09■■□□□ 1.29
NCKIPSD-208ENST00000454134 TIMELESSQ9UNS1 1208 aa23.09■■□□□ 1.29
NCKIPSD-208ENST00000454134 CSB-PGBD3P0DP91 1061 aa23.08■■□□□ 1.29
NCKIPSD-208ENST00000454134 TMF1P82094 1093 aa23.08■■□□□ 1.29
NCKIPSD-208ENST00000454134 NINLQ9Y2I6 1382 aa23.08■■□□□ 1.29
NCKIPSD-208ENST00000454134 TNS1Q9HBL0 1735 aaKnown RBP23.08■■□□□ 1.28
NCKIPSD-208ENST00000454134 PARP4Q9UKK3 1724 aaKnown RBP23.08■■□□□ 1.28
NCKIPSD-208ENST00000454134 CCER1Q8TC90 406 aaPredicted RBP23.05■■□□□ 1.28
NCKIPSD-208ENST00000454134 OVOS2A0A0J9YW53 1432 aa23.05■■□□□ 1.28
NCKIPSD-208ENST00000454134 OVOS2Q6IE36 1432 aa23.05■■□□□ 1.28
NCKIPSD-208ENST00000454134 LTN1O94822 1766 aa23.04■■□□□ 1.28
NCKIPSD-208ENST00000454134 CARD10Q9BWT7 1032 aa23.03■■□□□ 1.28
NCKIPSD-208ENST00000454134 LRRC37A3O60309 1634 aa23.03■■□□□ 1.28
NCKIPSD-208ENST00000454134 ABCC6O95255 1503 aa23.03■■□□□ 1.28
NCKIPSD-208ENST00000454134 ANKRD36BQ8N2N9 1353 aa23.02■■□□□ 1.28
NCKIPSD-208ENST00000454134 DDB1Q16531 1140 aa23.02■■□□□ 1.28
NCKIPSD-208ENST00000454134 WNK3Q9BYP7 1800 aa23.01■■□□□ 1.27
NCKIPSD-208ENST00000454134 DISP2A7MBM2 1401 aa23.01■■□□□ 1.27
NCKIPSD-208ENST00000454134 APBA3O96018 575 aa23.01■■□□□ 1.27
NCKIPSD-208ENST00000454134 EZH2Q15910 746 aaKnown RBP23.01■■□□□ 1.27
NCKIPSD-208ENST00000454134 PSDA5PKW4 1024 aaPredicted RBP22.98■■□□□ 1.27
NCKIPSD-208ENST00000454134 COG3Q96JB2 828 aa22.98■■□□□ 1.27
NCKIPSD-208ENST00000454134 ERBB3P21860 1342 aa22.98■■□□□ 1.27
NCKIPSD-208ENST00000454134 PEAK1Q9H792 1746 aa22.97■■□□□ 1.27
NCKIPSD-208ENST00000454134 FBLN1P23142 703 aa22.97■■□□□ 1.27
NCKIPSD-208ENST00000454134 CDCA8Q53HL2 280 aa22.97■■□□□ 1.27
NCKIPSD-208ENST00000454134 ANKRD24Q8TF21 1146 aa22.97■■□□□ 1.27
NCKIPSD-208ENST00000454134 CAMKK2Q96RR4 588 aa22.97■■□□□ 1.27
NCKIPSD-208ENST00000454134 CDCA7Q9BWT1 371 aaPredicted RBP22.97■■□□□ 1.27
NCKIPSD-208ENST00000454134 NLRP2Q9NX02 1062 aa22.97■■□□□ 1.27
NCKIPSD-208ENST00000454134 OVOS2A0A0G2JMS6 1433 aa22.97■■□□□ 1.27
NCKIPSD-208ENST00000454134 SRCAPQ6ZRS2 3230 aa22.97■■□□□ 1.27
NCKIPSD-208ENST00000454134 CCDC7Q96M83 1385 aa22.96■■□□□ 1.27
NCKIPSD-208ENST00000454134 MARCH10Q8NA82 808 aaPredicted RBP22.95■■□□□ 1.26
NCKIPSD-208ENST00000454134 GGNBP2Q9H3C7 697 aa22.94■■□□□ 1.26
NCKIPSD-208ENST00000454134 MAP3K19Q56UN5 1328 aa22.93■■□□□ 1.26
NCKIPSD-208ENST00000454134 FYB1O15117 783 aa22.93■■□□□ 1.26
NCKIPSD-208ENST00000454134 IP6K1Q92551 441 aa22.93■■□□□ 1.26
NCKIPSD-208ENST00000454134 LTV1Q96GA3 475 aaPredicted RBP22.93■■□□□ 1.26
NCKIPSD-208ENST00000454134 C11orf95C9JLR9 678 aaPredicted RBP22.92■■□□□ 1.26
NCKIPSD-208ENST00000454134 EXOC5O00471 708 aa22.92■■□□□ 1.26
NCKIPSD-208ENST00000454134 MYOM1P52179 1685 aa22.92■■□□□ 1.26
NCKIPSD-208ENST00000454134 R3HDM1Q15032 1099 aaKnown RBP22.91■■□□□ 1.26
NCKIPSD-208ENST00000454134 PTF1AQ7RTS3 328 aa22.91■■□□□ 1.26
NCKIPSD-208ENST00000454134 SBF2Q86WG5 1849 aa22.91■■□□□ 1.26
NCKIPSD-208ENST00000454134 CARD14Q9BXL6 1004 aa22.9■■□□□ 1.26
NCKIPSD-208ENST00000454134 PARD3Q8TEW0 1356 aa22.89■■□□□ 1.26
NCKIPSD-208ENST00000454134 AMPHP49418 695 aa22.89■■□□□ 1.25
NCKIPSD-208ENST00000454134 TNS2Q63HR2 1409 aa22.89■■□□□ 1.25
NCKIPSD-208ENST00000454134 IL2RBP14784 551 aa22.88■■□□□ 1.25
NCKIPSD-208ENST00000454134 HOXC9P31274 260 aa22.88■■□□□ 1.25
NCKIPSD-208ENST00000454134 RRS1Q15050 365 aaKnown RBP22.88■■□□□ 1.25
NCKIPSD-208ENST00000454134 POLR3GLQ9BT43 218 aa22.88■■□□□ 1.25
NCKIPSD-208ENST00000454134 RREB1Q92766 1687 aa22.87■■□□□ 1.25
NCKIPSD-208ENST00000454134 KIF20BQ96Q89 1820 aa22.87■■□□□ 1.25
NCKIPSD-208ENST00000454134 NSD3Q9BZ95 1437 aa22.86■■□□□ 1.25
NCKIPSD-208ENST00000454134 HSPA5P11021 654 aaKnown RBP22.86■■□□□ 1.25
NCKIPSD-208ENST00000454134 BCL11BQ9C0K0 894 aaPredicted RBP22.86■■□□□ 1.25
NCKIPSD-208ENST00000454134 NUP188Q5SRE5 1749 aa22.85■■□□□ 1.25
NCKIPSD-208ENST00000454134 EIF4G2P78344 907 aaKnown RBP eCLIP22.85■■□□□ 1.25
NCKIPSD-208ENST00000454134 BCL9O00512 1426 aa22.84■■□□□ 1.25
NCKIPSD-208ENST00000454134 FAM208AQ9UK61 1670 aaKnown RBP22.82■■□□□ 1.24
NCKIPSD-208ENST00000454134 RGPD2P0DJD1 1756 aa22.81■■□□□ 1.24
NCKIPSD-208ENST00000454134 RTL1A6NKG5 1358 aa22.8■■□□□ 1.24
NCKIPSD-208ENST00000454134 PLSCR1O15162 318 aa22.8■■□□□ 1.24
NCKIPSD-208ENST00000454134 KCNQ2O43526 872 aa22.8■■□□□ 1.24
NCKIPSD-208ENST00000454134 ACSBG1Q96GR2 724 aa22.8■■□□□ 1.24
NCKIPSD-208ENST00000454134 NBPF14Q5TI25 921 aa22.79■■□□□ 1.24
NCKIPSD-208ENST00000454134 LRP5O75197 1615 aa22.79■■□□□ 1.24
NCKIPSD-208ENST00000454134 RGPD3A6NKT7 1758 aaPredicted RBP22.77■■□□□ 1.24
NCKIPSD-208ENST00000454134 RGPD4Q7Z3J3 1758 aa22.77■■□□□ 1.24
NCKIPSD-208ENST00000454134 HSP90AB2PQ58FF8 381 aa22.77■■□□□ 1.24
NCKIPSD-208ENST00000454134 DDX54Q8TDD1 881 aaKnown RBP22.77■■□□□ 1.24
NCKIPSD-208ENST00000454134 NBPF6Q5VWK0 638 aa22.76■■□□□ 1.23
NCKIPSD-208ENST00000454134 PROM2Q8N271 834 aa22.76■■□□□ 1.23
NCKIPSD-208ENST00000454134 USHBP1Q8N6Y0 703 aa22.76■■□□□ 1.23
NCKIPSD-208ENST00000454134 NBPF4Q96M43 638 aa22.76■■□□□ 1.23
NCKIPSD-208ENST00000454134 NHSQ6T4R5 1651 aa22.75■■□□□ 1.23
NCKIPSD-208ENST00000454134 CGNL1Q0VF96 1302 aa22.75■■□□□ 1.23
NCKIPSD-208ENST00000454134 EMILIN1Q9Y6C2 1016 aa22.74■■□□□ 1.23
NCKIPSD-208ENST00000454134 INSRP06213 1382 aa22.74■■□□□ 1.23
NCKIPSD-208ENST00000454134 FLT4P35916 1363 aa22.74■■□□□ 1.23
NCKIPSD-208ENST00000454134 MEGF6O75095 1541 aa22.73■■□□□ 1.23
NCKIPSD-208ENST00000454134 SMG6Q86US8 1419 aaKnown RBP22.73■■□□□ 1.23
NCKIPSD-208ENST00000454134 PPM1GO15355 546 aaPredicted RBP22.72■■□□□ 1.23
NCKIPSD-208ENST00000454134 TXNRD1Q16881 649 aa22.72■■□□□ 1.23
NCKIPSD-208ENST00000454134 ANO8Q9HCE9 1232 aaPredicted RBP22.72■■□□□ 1.23
NCKIPSD-208ENST00000454134 PANK3Q9H999 370 aa22.71■■□□□ 1.23
NCKIPSD-208ENST00000454134 ZCRB1Q8TBF4 217 aaKnown RBP22.7■■□□□ 1.22
NCKIPSD-208ENST00000454134 KIF24Q5T7B8 1368 aa22.7■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms