RNA–Protein interactions for RNA: ENST00000454134.1

NCKIPSD-208, Transcript of NCK interacting protein with SH3 domain, humanhuman

TSL 3

Gene NCKIPSD, Length 998 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCKIPSD-208ENST00000454134 NISCHQ9Y2I1 1504 aa40.67■■■■■ 4.1
NCKIPSD-208ENST00000454134 CCDC180Q9P1Z9 1646 aa36.3■■■■□ 3.4
NCKIPSD-208ENST00000454134 ABCC9O60706 1549 aa36.05■■■■□ 3.36
NCKIPSD-208ENST00000454134 RB1CC1Q8TDY2 1594 aa34.4■■■■□ 3.1
NCKIPSD-208ENST00000454134 DCAF8L2P0C7V8 631 aa34.26■■■■□ 3.08
NCKIPSD-208ENST00000454134 NACADO15069 1562 aa34.24■■■■□ 3.07
NCKIPSD-208ENST00000454134 MYO15BQ96JP2 1530 aa33.84■■■■□ 3.01
NCKIPSD-208ENST00000454134 ZCCHC6Q5VYS8 1495 aaKnown RBP33.77■■■■□ 3
NCKIPSD-208ENST00000454134 UNC13AQ9UPW8 1703 aa33.65■■■□□ 2.98
NCKIPSD-208ENST00000454134 PABPN1Q86U42 306 aaKnown RBP eCLIP33.65■■■□□ 2.98
NCKIPSD-208ENST00000454134 DCAF1Q9Y4B6 1507 aa33.56■■■□□ 2.96
NCKIPSD-208ENST00000454134 DNAJC5BQ9UF47 199 aa33.52■■■□□ 2.96
NCKIPSD-208ENST00000454134 BICRAQ9NZM4 1560 aa33.42■■■□□ 2.94
NCKIPSD-208ENST00000454134 SCRIBQ14160 1630 aa33.18■■■□□ 2.9
NCKIPSD-208ENST00000454134 SHROOM4Q9ULL8 1493 aa32.91■■■□□ 2.86
NCKIPSD-208ENST00000454134 EIF4G1Q04637 1599 aaKnown RBP32.56■■■□□ 2.8
NCKIPSD-208ENST00000454134 CC2D2AQ9P2K1 1620 aa32.55■■■□□ 2.8
NCKIPSD-208ENST00000454134 CECR2Q9BXF3 1484 aa32.4■■■□□ 2.78
NCKIPSD-208ENST00000454134 SMARCA4P51532 1647 aa31.65■■■□□ 2.66
NCKIPSD-208ENST00000454134 NCAPD3P42695 1498 aa31.61■■■□□ 2.65
NCKIPSD-208ENST00000454134 ATAD2BQ9ULI0 1458 aa31.59■■■□□ 2.65
NCKIPSD-208ENST00000454134 BAZ1AQ9NRL2 1556 aaPredicted RBP31.53■■■□□ 2.64
NCKIPSD-208ENST00000454134 SMARCA2P51531 1590 aa31.5■■■□□ 2.63
NCKIPSD-208ENST00000454134 HMGXB3Q12766 1538 aa31.4■■■□□ 2.62
NCKIPSD-208ENST00000454134 MROH2BQ7Z745 1585 aa31.38■■■□□ 2.61
NCKIPSD-208ENST00000454134 BAZ1BQ9UIG0 1483 aaKnown RBP31.31■■■□□ 2.6
NCKIPSD-208ENST00000454134 PEG3Q9GZU2 1588 aa31.3■■■□□ 2.6
NCKIPSD-208ENST00000454134 ERCC6Q03468 1493 aa31.08■■■□□ 2.57
NCKIPSD-208ENST00000454134 NESP48681 1621 aa31.07■■■□□ 2.56
NCKIPSD-208ENST00000454134 WIZO95785 1651 aa31.02■■■□□ 2.56
NCKIPSD-208ENST00000454134 LAMC3Q9Y6N6 1575 aa30.84■■■□□ 2.53
NCKIPSD-208ENST00000454134 CUX2O14529 1486 aa30.84■■■□□ 2.53
NCKIPSD-208ENST00000454134 RSF1Q96T23 1441 aaPredicted RBP30.84■■■□□ 2.53
NCKIPSD-208ENST00000454134 CADPSQ9ULU8 1353 aa30.68■■■□□ 2.5
NCKIPSD-208ENST00000454134 PDS5BQ9NTI5 1447 aa30.66■■■□□ 2.5
NCKIPSD-208ENST00000454134 KIF21AQ7Z4S6 1674 aa30.65■■■□□ 2.5
NCKIPSD-208ENST00000454134 THOC2Q8NI27 1593 aaKnown RBP30.63■■■□□ 2.49
NCKIPSD-208ENST00000454134 TOP2AP11388 1531 aaKnown RBP30.62■■■□□ 2.49
NCKIPSD-208ENST00000454134 DNAJC5Q9H3Z4 198 aa30.46■■■□□ 2.47
NCKIPSD-208ENST00000454134 CFTRP13569 1480 aa30.41■■■□□ 2.46
NCKIPSD-208ENST00000454134 MRC2Q9UBG0 1479 aa30.39■■■□□ 2.46
NCKIPSD-208ENST00000454134 FANCD2Q9BXW9 1451 aa30.36■■■□□ 2.45
NCKIPSD-208ENST00000454134 CEP164Q9UPV0 1460 aa30.35■■■□□ 2.45
NCKIPSD-208ENST00000454134 CCDC88BA6NC98 1476 aa30.3■■■□□ 2.44
NCKIPSD-208ENST00000454134 WDR62O43379 1518 aa30.29■■■□□ 2.44
NCKIPSD-208ENST00000454134 PRDM2Q13029 1718 aa30.11■■■□□ 2.41
NCKIPSD-208ENST00000454134 URB2Q14146 1524 aaKnown RBP30.1■■■□□ 2.41
NCKIPSD-208ENST00000454134 TOPBP1Q92547 1522 aa29.82■■■□□ 2.36
NCKIPSD-208ENST00000454134 SUPT5HO00267 1087 aaKnown RBP29.81■■■□□ 2.36
NCKIPSD-208ENST00000454134 ABCC8Q09428 1581 aa29.73■■■□□ 2.35
NCKIPSD-208ENST00000454134 DNMBPQ6XZF7 1577 aa29.73■■■□□ 2.35
NCKIPSD-208ENST00000454134 IFT140Q96RY7 1462 aa29.71■■■□□ 2.35
NCKIPSD-208ENST00000454134 ZNF608Q9ULD9 1512 aaPredicted RBP29.68■■■□□ 2.34
NCKIPSD-208ENST00000454134 POLA1P09884 1462 aaPredicted RBP29.54■■■□□ 2.32
NCKIPSD-208ENST00000454134 OSCARQ8IYS5 282 aa29.53■■■□□ 2.32
NCKIPSD-208ENST00000454134 TARBP1Q13395 1621 aaKnown RBP29.52■■■□□ 2.32
NCKIPSD-208ENST00000454134 EIF4G3O43432 1585 aaKnown RBP29.51■■■□□ 2.31
NCKIPSD-208ENST00000454134 AQRO60306 1485 aaKnown RBP eCLIP29.46■■■□□ 2.316e-7■■■■■ 27.6
NCKIPSD-208ENST00000454134 RAD54L2Q9Y4B4 1467 aa29.46■■■□□ 2.31
NCKIPSD-208ENST00000454134 CUX1P39880 1505 aa29.45■■■□□ 2.31
NCKIPSD-208ENST00000454134 SOGA1O94964 1423 aa29.42■■■□□ 2.3
NCKIPSD-208ENST00000454134 FGD5Q6ZNL6 1462 aa29.42■■■□□ 2.3
NCKIPSD-208ENST00000454134 TRIM41Q8WV44 630 aa29.34■■■□□ 2.29
NCKIPSD-208ENST00000454134 TDRD9Q8NDG6 1382 aaKnown RBP29.34■■■□□ 2.29
NCKIPSD-208ENST00000454134 CHD1O14646 1710 aa29.23■■■□□ 2.27
NCKIPSD-208ENST00000454134 FBLN2P98095 1184 aa29.21■■■□□ 2.27
NCKIPSD-208ENST00000454134 WDR97A6NE52 1622 aa29.18■■■□□ 2.26
NCKIPSD-208ENST00000454134 SNAPC4Q5SXM2 1469 aa29.16■■■□□ 2.26
NCKIPSD-208ENST00000454134 RIMBP3CA6NJZ7 1639 aa29.12■■■□□ 2.25
NCKIPSD-208ENST00000454134 RIMBP3BA6NNM3 1639 aa29.12■■■□□ 2.25
NCKIPSD-208ENST00000454134 RIMBP3Q9UFD9 1639 aa29.12■■■□□ 2.25
NCKIPSD-208ENST00000454134 GRIN2BQ13224 1484 aa29.1■■■□□ 2.25
NCKIPSD-208ENST00000454134 WRNQ14191 1432 aaPredicted RBP eCLIP29.08■■■□□ 2.25
NCKIPSD-208ENST00000454134 ABCA10Q8WWZ4 1543 aa29.07■■■□□ 2.24
NCKIPSD-208ENST00000454134 SYNJ1O43426 1573 aa29.06■■■□□ 2.24
NCKIPSD-208ENST00000454134 ARHGEF11O15085 1522 aa29.06■■■□□ 2.24
NCKIPSD-208ENST00000454134 GAPVD1Q14C86 1478 aa29.06■■■□□ 2.24
NCKIPSD-208ENST00000454134 MAGI1Q96QZ7 1491 aaPredicted RBP29.05■■■□□ 2.24
NCKIPSD-208ENST00000454134 TOP2BQ02880 1626 aa29.05■■■□□ 2.24
NCKIPSD-208ENST00000454134 BIVM-ERCC5R4GMW8 1640 aa29.04■■■□□ 2.24
NCKIPSD-208ENST00000454134 PBRM1Q86U86 1689 aa29.02■■■□□ 2.24
NCKIPSD-208ENST00000454134 CHMP7Q8WUX9 453 aaPredicted RBP29.02■■■□□ 2.24
NCKIPSD-208ENST00000454134 ABCA5Q8WWZ7 1642 aa29.01■■■□□ 2.23
NCKIPSD-208ENST00000454134 SYNJ2O15056 1496 aa28.97■■■□□ 2.23
NCKIPSD-208ENST00000454134 CLASP1Q7Z460 1538 aa28.89■■■□□ 2.21
NCKIPSD-208ENST00000454134 CYB5RLQ6IPT4 315 aa28.87■■■□□ 2.21
NCKIPSD-208ENST00000454134 ARAP1Q96P48 1450 aa28.81■■■□□ 2.2
NCKIPSD-208ENST00000454134 ADAMTS12P58397 1594 aa28.76■■■□□ 2.19
NCKIPSD-208ENST00000454134 GRIN2AQ12879 1464 aa28.74■■■□□ 2.19
NCKIPSD-208ENST00000454134 ERICH3Q5RHP9 1530 aa28.7■■■□□ 2.19
NCKIPSD-208ENST00000454134 FHAD1B1AJZ9 1412 aa28.69■■■□□ 2.18
NCKIPSD-208ENST00000454134 CEP170Q5SW79 1584 aa28.63■■■□□ 2.17
NCKIPSD-208ENST00000454134 NUP160Q12769 1436 aa28.61■■■□□ 2.17
NCKIPSD-208ENST00000454134 ERCC6L2Q5T890 1561 aa28.51■■■□□ 2.15
NCKIPSD-208ENST00000454134 KIF27Q86VH2 1401 aa28.5■■■□□ 2.15
NCKIPSD-208ENST00000454134 IGF1RP08069 1367 aa28.46■■■□□ 2.15
NCKIPSD-208ENST00000454134 SHROOM2Q13796 1616 aa28.44■■■□□ 2.14
NCKIPSD-208ENST00000454134 TRHP20396 242 aaPredicted RBP28.43■■■□□ 2.14
NCKIPSD-208ENST00000454134 JPH4Q96JJ6 628 aa28.36■■■□□ 2.13
NCKIPSD-208ENST00000454134 CUL7Q14999 1698 aa28.35■■■□□ 2.13
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms