RNA–Protein interactions for RNA: ENST00000443016.1

USP6NL-203, Transcript of USP6 N-terminal like, humanhuman

TSL 2

Gene USP6NL, Length 2,491 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP6NL-203ENST00000443016 CPSF1Q10570 1443 aaKnown RBP12.29□□□□□ -0.44
USP6NL-203ENST00000443016 BAG6P46379 1132 aa12.29□□□□□ -0.44
USP6NL-203ENST00000443016 TOM1L2Q6ZVM7 507 aa12.28□□□□□ -0.44
USP6NL-203ENST00000443016 AATKQ6ZMQ8 1374 aa12.28□□□□□ -0.44
USP6NL-203ENST00000443016 BARGINQ6ZT62 677 aa12.28□□□□□ -0.44
USP6NL-203ENST00000443016 CSB-PGBD3P0DP91 1061 aa12.27□□□□□ -0.45
USP6NL-203ENST00000443016 THRAP3Q9Y2W1 955 aaKnown RBP12.27□□□□□ -0.45
USP6NL-203ENST00000443016 PIK3C2AO00443 1686 aa12.27□□□□□ -0.45
USP6NL-203ENST00000443016 COL5A2P05997 1499 aaPredicted RBP12.26□□□□□ -0.45
USP6NL-203ENST00000443016 FAM196AQ6ZSG2 479 aa12.26□□□□□ -0.45
USP6NL-203ENST00000443016 ARHGEF25Q86VW2 580 aa12.26□□□□□ -0.45
USP6NL-203ENST00000443016 TESK2Q96S53 571 aa12.26□□□□□ -0.45
USP6NL-203ENST00000443016 SLIT3O75094 1523 aa12.26□□□□□ -0.45
USP6NL-203ENST00000443016 CRB1P82279 1406 aa12.26□□□□□ -0.45
USP6NL-203ENST00000443016 NME9Q86XW9 330 aa12.26□□□□□ -0.45
USP6NL-203ENST00000443016 PUS7Q96PZ0 661 aaKnown RBP12.26□□□□□ -0.45
USP6NL-203ENST00000443016 AXIN2Q9Y2T1 843 aa12.25□□□□□ -0.45
USP6NL-203ENST00000443016 LMO7Q8WWI1 1683 aa12.25□□□□□ -0.45
USP6NL-203ENST00000443016 TRIM37O94972 964 aa12.25□□□□□ -0.45
USP6NL-203ENST00000443016 ZEB1P37275 1124 aaPredicted RBP12.25□□□□□ -0.45
USP6NL-203ENST00000443016 TMF1P82094 1093 aa12.25□□□□□ -0.45
USP6NL-203ENST00000443016 AKAP12Q02952 1782 aa12.24□□□□□ -0.45
USP6NL-203ENST00000443016 USP47Q96K76 1375 aa12.24□□□□□ -0.45
USP6NL-203ENST00000443016 THSD7AQ9UPZ6 1657 aa12.24□□□□□ -0.45
USP6NL-203ENST00000443016 A0A1W2PP64 1363 aa12.24□□□□□ -0.45
USP6NL-203ENST00000443016 EN1Q05925 392 aaPredicted RBP12.23□□□□□ -0.45
USP6NL-203ENST00000443016 WDR17Q8IZU2 1322 aa12.23□□□□□ -0.45
USP6NL-203ENST00000443016 EDC4Q6P2E9 1401 aaKnown RBP12.23□□□□□ -0.45
USP6NL-203ENST00000443016 CD163L1Q9NR16 1453 aa12.23□□□□□ -0.45
USP6NL-203ENST00000443016 NINLQ9Y2I6 1382 aa12.22□□□□□ -0.45
USP6NL-203ENST00000443016 DDB1Q16531 1140 aa12.22□□□□□ -0.45
USP6NL-203ENST00000443016 PPP4R3CPQ6ZMV5 832 aa12.22□□□□□ -0.45
USP6NL-203ENST00000443016 USP31Q70CQ4 1352 aa12.21□□□□□ -0.45
USP6NL-203ENST00000443016 APBA3O96018 575 aa12.21□□□□□ -0.45
USP6NL-203ENST00000443016 CDCA8Q53HL2 280 aa12.21□□□□□ -0.45
USP6NL-203ENST00000443016 MON2Q7Z3U7 1717 aa12.21□□□□□ -0.46
USP6NL-203ENST00000443016 COG3Q96JB2 828 aa12.2□□□□□ -0.46
USP6NL-203ENST00000443016 CDCA7Q9BWT1 371 aaPredicted RBP12.2□□□□□ -0.46
USP6NL-203ENST00000443016 TMEM132AQ24JP5 1023 aa12.19□□□□□ -0.46
USP6NL-203ENST00000443016 CARD10Q9BWT7 1032 aa12.19□□□□□ -0.46
USP6NL-203ENST00000443016 NLRP2Q9NX02 1062 aa12.19□□□□□ -0.46
USP6NL-203ENST00000443016 C11orf95C9JLR9 678 aaPredicted RBP12.19□□□□□ -0.46
USP6NL-203ENST00000443016 NFAT5O94916 1531 aa12.18□□□□□ -0.46
USP6NL-203ENST00000443016 PSDA5PKW4 1024 aaPredicted RBP12.18□□□□□ -0.46
USP6NL-203ENST00000443016 EZH2Q15910 746 aaKnown RBP12.18□□□□□ -0.46
USP6NL-203ENST00000443016 VSIG10Q8N0Z9 540 aa12.18□□□□□ -0.46
USP6NL-203ENST00000443016 RGPD1P0DJD0 1748 aa12.18□□□□□ -0.46
USP6NL-203ENST00000443016 ANKRD36BQ8N2N9 1353 aa12.17□□□□□ -0.46
USP6NL-203ENST00000443016 COL18A1P39060 1754 aa12.17□□□□□ -0.46
USP6NL-203ENST00000443016 ERBB3P21860 1342 aa12.17□□□□□ -0.46
USP6NL-203ENST00000443016 OVOS2A0A0G2JMS6 1433 aa12.17□□□□□ -0.46
USP6NL-203ENST00000443016 OVOS2A0A0J9YW53 1432 aa12.17□□□□□ -0.46
USP6NL-203ENST00000443016 OVOS2Q6IE36 1432 aa12.17□□□□□ -0.46
USP6NL-203ENST00000443016 EXOC5O00471 708 aa12.17□□□□□ -0.46
USP6NL-203ENST00000443016 ANKRD24Q8TF21 1146 aa12.16□□□□□ -0.46
USP6NL-203ENST00000443016 CCDC7Q96M83 1385 aa12.16□□□□□ -0.46
USP6NL-203ENST00000443016 LTV1Q96GA3 475 aaPredicted RBP12.16□□□□□ -0.46
USP6NL-203ENST00000443016 POLR3GLQ9BT43 218 aa12.16□□□□□ -0.46
USP6NL-203ENST00000443016 DISP2A7MBM2 1401 aa12.15□□□□□ -0.46
USP6NL-203ENST00000443016 AMPHP49418 695 aa12.15□□□□□ -0.46
USP6NL-203ENST00000443016 CAMKK2Q96RR4 588 aa12.15□□□□□ -0.46
USP6NL-203ENST00000443016 PARP4Q9UKK3 1724 aaKnown RBP12.15□□□□□ -0.46
USP6NL-203ENST00000443016 R3HDM1Q15032 1099 aaKnown RBP12.15□□□□□ -0.46
USP6NL-203ENST00000443016 GGNBP2Q9H3C7 697 aa12.14□□□□□ -0.47
USP6NL-203ENST00000443016 ABCC6O95255 1503 aa12.14□□□□□ -0.47
USP6NL-203ENST00000443016 RGPD5Q99666 1765 aa12.14□□□□□ -0.47
USP6NL-203ENST00000443016 PARD3Q8TEW0 1356 aa12.14□□□□□ -0.47
USP6NL-203ENST00000443016 MARCH10Q8NA82 808 aaPredicted RBP12.14□□□□□ -0.47
USP6NL-203ENST00000443016 IP6K1Q92551 441 aa12.14□□□□□ -0.47
USP6NL-203ENST00000443016 FBLN1P23142 703 aa12.13□□□□□ -0.47
USP6NL-203ENST00000443016 FYB1O15117 783 aa12.13□□□□□ -0.47
USP6NL-203ENST00000443016 IL2RBP14784 551 aa12.13□□□□□ -0.47
USP6NL-203ENST00000443016 NBPF14Q5TI25 921 aa12.13□□□□□ -0.47
USP6NL-203ENST00000443016 MAP3K19Q56UN5 1328 aa12.13□□□□□ -0.47
USP6NL-203ENST00000443016 TNS1Q9HBL0 1735 aaKnown RBP12.12□□□□□ -0.47
USP6NL-203ENST00000443016 LTN1O94822 1766 aa12.12□□□□□ -0.47
USP6NL-203ENST00000443016 LRRC37A3O60309 1634 aa12.12□□□□□ -0.47
USP6NL-203ENST00000443016 USP54Q70EL1 1684 aa12.12□□□□□ -0.47
USP6NL-203ENST00000443016 EIF4G2P78344 907 aaKnown RBP eCLIP12.12□□□□□ -0.47
USP6NL-203ENST00000443016 BCL11BQ9C0K0 894 aaPredicted RBP12.12□□□□□ -0.47
USP6NL-203ENST00000443016 RRS1Q15050 365 aaKnown RBP12.11□□□□□ -0.47
USP6NL-203ENST00000443016 HOXC9P31274 260 aa12.11□□□□□ -0.47
USP6NL-203ENST00000443016 PTF1AQ7RTS3 328 aa12.09□□□□□ -0.47
USP6NL-203ENST00000443016 TNS2Q63HR2 1409 aa12.09□□□□□ -0.47
USP6NL-203ENST00000443016 PLSCR1O15162 318 aa12.09□□□□□ -0.47
USP6NL-203ENST00000443016 NSD3Q9BZ95 1437 aa12.08□□□□□ -0.48
USP6NL-203ENST00000443016 PELP1Q8IZL8 1130 aaKnown RBP12.08□□□□□ -0.48
USP6NL-203ENST00000443016 DDX54Q8TDD1 881 aaKnown RBP12.08□□□□□ -0.48
USP6NL-203ENST00000443016 ACSBG1Q96GR2 724 aa12.08□□□□□ -0.48
USP6NL-203ENST00000443016 CARD14Q9BXL6 1004 aa12.08□□□□□ -0.48
USP6NL-203ENST00000443016 HSPA5P11021 654 aaKnown RBP12.08□□□□□ -0.48
USP6NL-203ENST00000443016 WNK3Q9BYP7 1800 aa12.07□□□□□ -0.48
USP6NL-203ENST00000443016 PPM1GO15355 546 aaPredicted RBP12.07□□□□□ -0.48
USP6NL-203ENST00000443016 BCL9O00512 1426 aa12.07□□□□□ -0.48
USP6NL-203ENST00000443016 SMG6Q86US8 1419 aaKnown RBP12.07□□□□□ -0.48
USP6NL-203ENST00000443016 PEAK1Q9H792 1746 aa12.07□□□□□ -0.48
USP6NL-203ENST00000443016 CGNL1Q0VF96 1302 aa12.07□□□□□ -0.48
USP6NL-203ENST00000443016 KCNQ2O43526 872 aa12.06□□□□□ -0.48
USP6NL-203ENST00000443016 RTL1A6NKG5 1358 aa12.06□□□□□ -0.48
USP6NL-203ENST00000443016 KAT6BQ8WYB5 2073 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms