RNA–Protein interactions for RNA: ENST00000435070.6

CPSF6-202, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF6, Length 6,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-202ENST00000435070 CHMP3Q9Y3E7 222 aa9.03□□□□□ -0.96
CPSF6-202ENST00000435070 PRDM15P57071 1507 aaPredicted RBP9.03□□□□□ -0.96
CPSF6-202ENST00000435070 USP48Q86UV5 1035 aa9.02□□□□□ -0.97
CPSF6-202ENST00000435070 TRIM6-TRIM34B2RNG4 842 aa9.02□□□□□ -0.97
CPSF6-202ENST00000435070 NCBP1Q09161 790 aaKnown RBP9.02□□□□□ -0.97
CPSF6-202ENST00000435070 PHF23Q9BUL5 403 aaPredicted RBP9.02□□□□□ -0.97
CPSF6-202ENST00000435070 TRIM34Q9BYJ4 488 aa9.02□□□□□ -0.97
CPSF6-202ENST00000435070 GIMAP6Q6P9H5 292 aa9.02□□□□□ -0.97
CPSF6-202ENST00000435070 TMX3Q96JJ7 454 aa9.02□□□□□ -0.97
CPSF6-202ENST00000435070 IFT57Q9NWB7 429 aa9.02□□□□□ -0.97
CPSF6-202ENST00000435070 SIRT2Q8IXJ6 389 aa9.02□□□□□ -0.97
CPSF6-202ENST00000435070 DRC7Q8IY82 874 aa9.01□□□□□ -0.97
CPSF6-202ENST00000435070 GCC1Q96CN9 775 aa9.01□□□□□ -0.97
CPSF6-202ENST00000435070 SLFN14P0C7P3 912 aa9.01□□□□□ -0.97
CPSF6-202ENST00000435070 ST7Q9NRC1 585 aa9.01□□□□□ -0.97
CPSF6-202ENST00000435070 LAMC3Q9Y6N6 1575 aa9.01□□□□□ -0.97
CPSF6-202ENST00000435070 CCDC27Q2M243 656 aa9.01□□□□□ -0.97
CPSF6-202ENST00000435070 KIAA1524Q8TCG1 905 aa9.01□□□□□ -0.97
CPSF6-202ENST00000435070 UPF3BQ9BZI7 483 aaKnown RBP9.01□□□□□ -0.97
CPSF6-202ENST00000435070 POLR3AO14802 1390 aaPredicted RBP9.01□□□□□ -0.97
CPSF6-202ENST00000435070 PHF14O94880 888 aa9.01□□□□□ -0.97
CPSF6-202ENST00000435070 PLEKHM2Q8IWE5 1019 aa9.01□□□□□ -0.97
CPSF6-202ENST00000435070 ANKRD7Q92527 254 aa9.01□□□□□ -0.97
CPSF6-202ENST00000435070 TIGD1Q96MW7 591 aa9.01□□□□□ -0.97
CPSF6-202ENST00000435070 FEZ1Q99689 392 aa9.01□□□□□ -0.97
CPSF6-202ENST00000435070 LARP6Q9BRS8 491 aaKnown RBP9.01□□□□□ -0.97
CPSF6-202ENST00000435070 TMPOP42166 694 aaKnown RBP9.01□□□□□ -0.97
CPSF6-202ENST00000435070 INTS3Q68E01 1043 aaKnown RBP9.01□□□□□ -0.97
CPSF6-202ENST00000435070 THUMPD2Q9BTF0 503 aaKnown RBP9.01□□□□□ -0.97
CPSF6-202ENST00000435070 FIBPO43427 364 aa9□□□□□ -0.97
CPSF6-202ENST00000435070 PTGS1P23219 599 aa9□□□□□ -0.97
CPSF6-202ENST00000435070 KCNF1Q9H3M0 494 aa9□□□□□ -0.97
CPSF6-202ENST00000435070 CCDC66A2RUB6 948 aa9□□□□□ -0.97
CPSF6-202ENST00000435070 LRMPQ12912 555 aa9□□□□□ -0.97
CPSF6-202ENST00000435070 SPTLC3Q9NUV7 552 aa9□□□□□ -0.97
CPSF6-202ENST00000435070 TRAK1Q9UPV9 953 aa9□□□□□ -0.97
CPSF6-202ENST00000435070 EIF4G3O43432 1585 aaKnown RBP9□□□□□ -0.97
CPSF6-202ENST00000435070 LMOD2Q6P5Q4 547 aa9□□□□□ -0.97
CPSF6-202ENST00000435070 CTNNA3Q9UI47 895 aa9□□□□□ -0.97
CPSF6-202ENST00000435070 PPIP5K1Q6PFW1 1433 aa9□□□□□ -0.97
CPSF6-202ENST00000435070 ZBTB7BO15156 539 aaPredicted RBP9□□□□□ -0.97
CPSF6-202ENST00000435070 SDSP20132 328 aa9□□□□□ -0.97
CPSF6-202ENST00000435070 IQGAP2Q13576 1575 aa9□□□□□ -0.97
CPSF6-202ENST00000435070 NSD3Q9BZ95 1437 aa9□□□□□ -0.97
CPSF6-202ENST00000435070 KDM4AO75164 1064 aa9□□□□□ -0.97
CPSF6-202ENST00000435070 RTF1Q92541 710 aaKnown RBP9□□□□□ -0.97
CPSF6-202ENST00000435070 AP5Z1O43299 807 aa8.99□□□□□ -0.97
CPSF6-202ENST00000435070 PLB1Q6P1J6 1458 aa8.99□□□□□ -0.97
CPSF6-202ENST00000435070 CASC1Q6TDU7 716 aa8.99□□□□□ -0.97
CPSF6-202ENST00000435070 CNPY2Q9Y2B0 182 aa8.99□□□□□ -0.97
CPSF6-202ENST00000435070 TSHZ3Q63HK5 1081 aa8.99□□□□□ -0.97
CPSF6-202ENST00000435070 TNNT1P13805 278 aa8.99□□□□□ -0.97
CPSF6-202ENST00000435070 TRIM35Q9UPQ4 493 aa8.99□□□□□ -0.97
CPSF6-202ENST00000435070 NPC1L1Q9UHC9 1359 aa8.99□□□□□ -0.97
CPSF6-202ENST00000435070 TERF2Q15554 542 aa8.98□□□□□ -0.97
CPSF6-202ENST00000435070 FAM184AQ8NB25 1140 aa8.98□□□□□ -0.97
CPSF6-202ENST00000435070 BRD1O95696 1058 aa8.98□□□□□ -0.97
CPSF6-202ENST00000435070 TTC22Q5TAA0 569 aa8.98□□□□□ -0.97
CPSF6-202ENST00000435070 SRPK2P78362 688 aaKnown RBP8.98□□□□□ -0.97
CPSF6-202ENST00000435070 GABPB1Q06547 395 aaPredicted RBP8.98□□□□□ -0.97
CPSF6-202ENST00000435070 SAFB2Q14151 953 aaKnown RBP eCLIP8.98□□□□□ -0.97
CPSF6-202ENST00000435070 CCDC112Q8NEF3 446 aa8.98□□□□□ -0.97
CPSF6-202ENST00000435070 CCDC186Q7Z3E2 898 aa8.97□□□□□ -0.97
CPSF6-202ENST00000435070 DDX41Q9UJV9 622 aaKnown RBP8.97□□□□□ -0.97
CPSF6-202ENST00000435070 CAPN2P17655 700 aa8.97□□□□□ -0.97
CPSF6-202ENST00000435070 CHMP4CQ96CF2 233 aa8.97□□□□□ -0.97
CPSF6-202ENST00000435070 TMX1Q9H3N1 280 aa8.97□□□□□ -0.97
CPSF6-202ENST00000435070 PTPRGP23470 1445 aa8.97□□□□□ -0.97
CPSF6-202ENST00000435070 ADGBQ8N7X0 1667 aa8.97□□□□□ -0.97
CPSF6-202ENST00000435070 CLSTN1O94985 981 aa8.97□□□□□ -0.97
CPSF6-202ENST00000435070 UVSSAQ2YD98 709 aa8.97□□□□□ -0.97
CPSF6-202ENST00000435070 CHMP7Q8WUX9 453 aaPredicted RBP8.97□□□□□ -0.97
CPSF6-202ENST00000435070 CCDC183Q5T5S1 534 aa8.97□□□□□ -0.97
CPSF6-202ENST00000435070 TSPYL6Q8N831 410 aa8.97□□□□□ -0.97
CPSF6-202ENST00000435070 PLXNC1O60486 1568 aa8.97□□□□□ -0.97
CPSF6-202ENST00000435070 REC8O95072 547 aa8.97□□□□□ -0.97
CPSF6-202ENST00000435070 DNAJC2Q99543 621 aaKnown RBP8.97□□□□□ -0.97
CPSF6-202ENST00000435070 SPAG9O60271 1321 aaKnown RBP8.97□□□□□ -0.97
CPSF6-202ENST00000435070 KRT222Q8N1A0 295 aa8.96□□□□□ -0.97
CPSF6-202ENST00000435070 NRBP1Q9UHY1 535 aa8.96□□□□□ -0.97
CPSF6-202ENST00000435070 URB2Q14146 1524 aaKnown RBP8.96□□□□□ -0.97
CPSF6-202ENST00000435070 GRIN2AQ12879 1464 aa8.96□□□□□ -0.97
CPSF6-202ENST00000435070 TPD52L1Q16890 204 aaPredicted RBP8.96□□□□□ -0.97
CPSF6-202ENST00000435070 CTIFO43310 598 aaKnown RBP8.96□□□□□ -0.97
CPSF6-202ENST00000435070 CT47B1P0C2W7 299 aaPredicted RBP8.96□□□□□ -0.97
CPSF6-202ENST00000435070 ANO2Q9NQ90 1003 aa8.96□□□□□ -0.97
CPSF6-202ENST00000435070 SCAF11Q99590 1463 aaKnown RBP8.96□□□□□ -0.98
CPSF6-202ENST00000435070 GGNBP2Q9H3C7 697 aa8.96□□□□□ -0.98
CPSF6-202ENST00000435070 PALD1Q9ULE6 856 aa8.96□□□□□ -0.98
CPSF6-202ENST00000435070 GOLGA6L6A8MZA4 724 aa8.95□□□□□ -0.98
CPSF6-202ENST00000435070 KIF18AQ8NI77 898 aa8.95□□□□□ -0.98
CPSF6-202ENST00000435070 ADCY10Q96PN6 1610 aa8.95□□□□□ -0.98
CPSF6-202ENST00000435070 CCDC141Q6ZP82 1450 aa8.95□□□□□ -0.98
CPSF6-202ENST00000435070 CAMK4Q16566 473 aa8.95□□□□□ -0.98
CPSF6-202ENST00000435070 MX1P20591 662 aa8.95□□□□□ -0.98
CPSF6-202ENST00000435070 IRX3P78415 501 aaPredicted RBP8.95□□□□□ -0.98
CPSF6-202ENST00000435070 ERC2O15083 957 aa8.95□□□□□ -0.98
CPSF6-202ENST00000435070 GTF3C6Q969F1 213 aa8.95□□□□□ -0.98
CPSF6-202ENST00000435070 ABCC10Q5T3U5 1492 aa8.95□□□□□ -0.98
CPSF6-202ENST00000435070 ZRSR1Q15695 479 aaKnown RBP8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms