RNA–Protein interactions for RNA: ENST00000427534.6

SPG11-202, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SPG11, Length 6,935 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-202ENST00000427534 GAS2L2Q8NHY3 880 aa15.74■□□□□ 0.11
SPG11-202ENST00000427534 CCDC69A6NI79 296 aa15.73■□□□□ 0.11
SPG11-202ENST00000427534 FIBPO43427 364 aa15.73■□□□□ 0.11
SPG11-202ENST00000427534 GSE1Q14687 1217 aa15.73■□□□□ 0.11
SPG11-202ENST00000427534 GNL3LQ9NVN8 582 aaKnown RBP15.73■□□□□ 0.11
SPG11-202ENST00000427534 EFCAB5A4FU69 1503 aa15.73■□□□□ 0.11
SPG11-202ENST00000427534 NEK4P51957 841 aa15.73■□□□□ 0.11
SPG11-202ENST00000427534 PDCL3Q9H2J4 239 aa15.73■□□□□ 0.11
SPG11-202ENST00000427534 SCAPERQ9BY12 1400 aa15.73■□□□□ 0.11
SPG11-202ENST00000427534 NESP48681 1621 aa15.73■□□□□ 0.11
SPG11-202ENST00000427534 AAMPQ13685 434 aa15.73■□□□□ 0.11
SPG11-202ENST00000427534 AACSQ86V21 672 aa15.73■□□□□ 0.11
SPG11-202ENST00000427534 SPG7Q9UQ90 795 aa15.73■□□□□ 0.11
SPG11-202ENST00000427534 HFM1A2PYH4 1435 aa15.73■□□□□ 0.11
SPG11-202ENST00000427534 IDH1O75874 414 aaKnown RBP15.73■□□□□ 0.11
SPG11-202ENST00000427534 ANKLE2Q86XL3 938 aa15.72■□□□□ 0.11
SPG11-202ENST00000427534 ANKIB1Q9P2G1 1089 aa15.72■□□□□ 0.11
SPG11-202ENST00000427534 LIG1P18858 919 aa15.72■□□□□ 0.11
SPG11-202ENST00000427534 TDO2P48775 406 aa15.72■□□□□ 0.11
SPG11-202ENST00000427534 RUFY1Q96T51 708 aa15.72■□□□□ 0.11
SPG11-202ENST00000427534 PLCD3Q8N3E9 789 aa15.72■□□□□ 0.11
SPG11-202ENST00000427534 LRP2BPQ9P2M1 347 aa15.72■□□□□ 0.11
SPG11-202ENST00000427534 ZNF76P36508 570 aa15.71■□□□□ 0.11
SPG11-202ENST00000427534 NUTM1Q86Y26 1132 aa15.71■□□□□ 0.11
SPG11-202ENST00000427534 FAM177A1Q8N128 213 aaPredicted RBP15.71■□□□□ 0.11
SPG11-202ENST00000427534 EHBP1L1Q8N3D4 1523 aa15.71■□□□□ 0.11
SPG11-202ENST00000427534 THEMISQ8N1K5 641 aaPredicted RBP15.71■□□□□ 0.11
SPG11-202ENST00000427534 JARID2Q92833 1246 aaPredicted RBP15.71■□□□□ 0.11
SPG11-202ENST00000427534 CWC27Q6UX04 472 aaKnown RBP15.71■□□□□ 0.11
SPG11-202ENST00000427534 C9orf84Q5VXU9 1444 aa15.71■□□□□ 0.11
SPG11-202ENST00000427534 NBPF8Q3BBV2 869 aa15.71■□□□□ 0.11
SPG11-202ENST00000427534 KIAA1107Q9UPP5 1409 aa15.71■□□□□ 0.11
SPG11-202ENST00000427534 CDC45O75419 566 aa15.71■□□□□ 0.1
SPG11-202ENST00000427534 MCM10Q7L590 875 aa15.71■□□□□ 0.1
SPG11-202ENST00000427534 DHX8Q14562 1220 aaKnown RBP15.7■□□□□ 0.1
SPG11-202ENST00000427534 NGLY1Q96IV0 654 aa15.7■□□□□ 0.1
SPG11-202ENST00000427534 SYCP1Q15431 976 aa15.7■□□□□ 0.1
SPG11-202ENST00000427534 MRC2Q9UBG0 1479 aa15.7■□□□□ 0.1
SPG11-202ENST00000427534 TTC16Q8NEE8 873 aa15.7■□□□□ 0.1
SPG11-202ENST00000427534 SPDYE4A6NLX3 237 aa15.7■□□□□ 0.1
SPG11-202ENST00000427534 ANKRD62A6NC57 917 aa15.7■□□□□ 0.1
SPG11-202ENST00000427534 SETQ01105 290 aaPredicted RBP15.7■□□□□ 0.1
SPG11-202ENST00000427534 GNAI2P04899 355 aa15.69■□□□□ 0.1
SPG11-202ENST00000427534 CAVIN1Q6NZI2 390 aaKnown RBP15.69■□□□□ 0.1
SPG11-202ENST00000427534 CCDC82Q8N4S0 544 aa15.69■□□□□ 0.1
SPG11-202ENST00000427534 IFT140Q96RY7 1462 aa15.69■□□□□ 0.1
SPG11-202ENST00000427534 SCLT1Q96NL6 688 aa15.69■□□□□ 0.1
SPG11-202ENST00000427534 CHMP5Q9NZZ3 219 aa15.69■□□□□ 0.1
SPG11-202ENST00000427534 ZPR1O75312 459 aa15.69■□□□□ 0.1
SPG11-202ENST00000427534 PRPF40AO75400 957 aaKnown RBP15.69■□□□□ 0.1
SPG11-202ENST00000427534 MAGEC2Q9UBF1 373 aaPredicted RBP15.68■□□□□ 0.1
SPG11-202ENST00000427534 GPTP24298 496 aa15.68■□□□□ 0.1
SPG11-202ENST00000427534 PSMA5P28066 241 aa15.68■□□□□ 0.1
SPG11-202ENST00000427534 MINDY4BA8MYZ0 360 aa15.68■□□□□ 0.1
SPG11-202ENST00000427534 PPFIA3O75145 1194 aa15.68■□□□□ 0.1
SPG11-202ENST00000427534 CA8P35219 290 aa15.68■□□□□ 0.1
SPG11-202ENST00000427534 PDZRN3Q9UPQ7 1066 aa15.67■□□□□ 0.1
SPG11-202ENST00000427534 TOPBP1Q92547 1522 aa15.67■□□□□ 0.1
SPG11-202ENST00000427534 TROQ12816 1431 aaPredicted RBP15.67■□□□□ 0.1
SPG11-202ENST00000427534 MNS1Q8NEH6 495 aa15.67■□□□□ 0.1
SPG11-202ENST00000427534 TOP2BQ02880 1626 aa15.67■□□□□ 0.1
SPG11-202ENST00000427534 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.67■□□□□ 0.14e-6■■□□□ 12.1
SPG11-202ENST00000427534 SMARCA5O60264 1052 aaPredicted RBP15.67■□□□□ 0.1
SPG11-202ENST00000427534 CCDC97Q96F63 343 aaPredicted RBP15.67■□□□□ 0.1
SPG11-202ENST00000427534 STK38Q15208 465 aa15.66■□□□□ 0.1
SPG11-202ENST00000427534 ACSBG1Q96GR2 724 aa15.66■□□□□ 0.1
SPG11-202ENST00000427534 LARP6Q9BRS8 491 aaKnown RBP15.66■□□□□ 0.1
SPG11-202ENST00000427534 POLA1P09884 1462 aaPredicted RBP15.66■□□□□ 0.1
SPG11-202ENST00000427534 SSR1P43307 286 aaKnown RBP15.66■□□□□ 0.1
SPG11-202ENST00000427534 DDX11Q96FC9 970 aa15.66■□□□□ 0.1
SPG11-202ENST00000427534 SOGA3Q5TF21 947 aa15.66■□□□□ 0.1
SPG11-202ENST00000427534 MYD88Q99836 296 aa15.66■□□□□ 0.1
SPG11-202ENST00000427534 TRIM5Q9C035 493 aa15.65■□□□□ 0.1
SPG11-202ENST00000427534 RTEL1-TNFRSF6BF6WH68 1400 aa15.65■□□□□ 0.1
SPG11-202ENST00000427534 SRGAP3O43295 1099 aa15.65■□□□□ 0.1
SPG11-202ENST00000427534 PLEKHH2Q8IVE3 1493 aa15.65■□□□□ 0.1
SPG11-202ENST00000427534 FOXO3O43524 673 aa15.65■□□□□ 0.1
SPG11-202ENST00000427534 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.65■□□□□ 0.1
SPG11-202ENST00000427534 HSP90AA2PQ14568 343 aaPredicted RBP15.64■□□□□ 0.09
SPG11-202ENST00000427534 CRACR2BQ8N4Y2 399 aaPredicted RBP15.64■□□□□ 0.09
SPG11-202ENST00000427534 GPS2Q13227 327 aa15.64■□□□□ 0.09
SPG11-202ENST00000427534 TMOD3Q9NYL9 352 aa15.64■□□□□ 0.09
SPG11-202ENST00000427534 GNAI3P08754 354 aa15.64■□□□□ 0.09
SPG11-202ENST00000427534 NEFHP12036 1026 aa15.64■□□□□ 0.09
SPG11-202ENST00000427534 METTL24Q5JXM2 366 aa15.64■□□□□ 0.09
SPG11-202ENST00000427534 ZNF622Q969S3 477 aaKnown RBP eCLIP15.64■□□□□ 0.092e-6■■□□□ 11.9
SPG11-202ENST00000427534 IGHMBP2P38935 993 aaKnown RBP15.64■□□□□ 0.09
SPG11-202ENST00000427534 POLR3DP05423 398 aaPredicted RBP15.63■□□□□ 0.09
SPG11-202ENST00000427534 TIAM1Q13009 1591 aa15.63■□□□□ 0.09
SPG11-202ENST00000427534 TXLNAP40222 546 aa15.63■□□□□ 0.09
SPG11-202ENST00000427534 DAPK1P53355 1430 aa15.63■□□□□ 0.09
SPG11-202ENST00000427534 ME1P48163 572 aa15.62■□□□□ 0.09
SPG11-202ENST00000427534 LRRCC1Q9C099 1032 aa15.62■□□□□ 0.09
SPG11-202ENST00000427534 SRCIN1Q9C0H9 1055 aa15.62■□□□□ 0.09
SPG11-202ENST00000427534 CHRNA2Q15822 529 aa15.62■□□□□ 0.09
SPG11-202ENST00000427534 SNAPC4Q5SXM2 1469 aa15.61■□□□□ 0.09
SPG11-202ENST00000427534 KINO60870 393 aaKnown RBP15.61■□□□□ 0.09
SPG11-202ENST00000427534 NACAP1Q9BZK3 213 aa15.61■□□□□ 0.09
SPG11-202ENST00000427534 SKAP1Q86WV1 359 aa15.61■□□□□ 0.09
SPG11-202ENST00000427534 PSMD1Q99460 953 aa15.61■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms