RNA–Protein interactions for RNA: ENST00000409954.6

MCF2L-210, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 5

Gene MCF2L, Length 574 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-210ENST00000409954 PARD3Q8TEW0 1356 aa20.48■□□□□ 0.87
MCF2L-210ENST00000409954 CSB-PGBD3P0DP91 1061 aa20.48■□□□□ 0.87
MCF2L-210ENST00000409954 PSDA5PKW4 1024 aaPredicted RBP20.47■□□□□ 0.87
MCF2L-210ENST00000409954 SOX12O15370 315 aa20.47■□□□□ 0.87
MCF2L-210ENST00000409954 USP31Q70CQ4 1352 aa20.46■□□□□ 0.87
MCF2L-210ENST00000409954 ST20-MTHFSA0A0A6YYL1 179 aa20.45■□□□□ 0.86
MCF2L-210ENST00000409954 NBPF14Q5TI25 921 aa20.45■□□□□ 0.86
MCF2L-210ENST00000409954 EXOC5O00471 708 aa20.44■□□□□ 0.86
MCF2L-210ENST00000409954 R3HDM1Q15032 1099 aaKnown RBP20.44■□□□□ 0.86
MCF2L-210ENST00000409954 NME9Q86XW9 330 aa20.43■□□□□ 0.86
MCF2L-210ENST00000409954 RGPD1P0DJD0 1748 aa20.43■□□□□ 0.86
MCF2L-210ENST00000409954 PLSCR1O15162 318 aa20.42■□□□□ 0.86
MCF2L-210ENST00000409954 TESK2Q96S53 571 aa20.42■□□□□ 0.86
MCF2L-210ENST00000409954 BCL11BQ9C0K0 894 aaPredicted RBP20.41■□□□□ 0.86
MCF2L-210ENST00000409954 PIK3C2AO00443 1686 aa20.41■□□□□ 0.86
MCF2L-210ENST00000409954 CCDC7Q96M83 1385 aa20.4■□□□□ 0.86
MCF2L-210ENST00000409954 TIMELESSQ9UNS1 1208 aa20.4■□□□□ 0.86
MCF2L-210ENST00000409954 NINLQ9Y2I6 1382 aa20.4■□□□□ 0.86
MCF2L-210ENST00000409954 OVOS2A0A0G2JMS6 1433 aa20.39■□□□□ 0.85
MCF2L-210ENST00000409954 OVOS2A0A0J9YW53 1432 aa20.39■□□□□ 0.85
MCF2L-210ENST00000409954 OVOS2Q6IE36 1432 aa20.39■□□□□ 0.85
MCF2L-210ENST00000409954 EDC4Q6P2E9 1401 aaKnown RBP20.39■□□□□ 0.85
MCF2L-210ENST00000409954 MARCH10Q8NA82 808 aaPredicted RBP20.39■□□□□ 0.85
MCF2L-210ENST00000409954 CD163L1Q9NR16 1453 aa20.38■□□□□ 0.85
MCF2L-210ENST00000409954 SRCAPQ6ZRS2 3230 aa20.37■□□□□ 0.85
MCF2L-210ENST00000409954 COL18A1P39060 1754 aa20.37■□□□□ 0.85
MCF2L-210ENST00000409954 NLRP2Q9NX02 1062 aa20.37■□□□□ 0.85
MCF2L-210ENST00000409954 AKAP12Q02952 1782 aa20.36■□□□□ 0.85
MCF2L-210ENST00000409954 TMF1P82094 1093 aa20.36■□□□□ 0.85
MCF2L-210ENST00000409954 BCL9O00512 1426 aa20.36■□□□□ 0.85
MCF2L-210ENST00000409954 A0A1W2PP64 1363 aa20.34■□□□□ 0.85
MCF2L-210ENST00000409954 ERBB3P21860 1342 aa20.34■□□□□ 0.85
MCF2L-210ENST00000409954 CDCA8Q53HL2 280 aa20.34■□□□□ 0.85
MCF2L-210ENST00000409954 IP6K1Q92551 441 aa20.34■□□□□ 0.85
MCF2L-210ENST00000409954 COG3Q96JB2 828 aa20.34■□□□□ 0.85
MCF2L-210ENST00000409954 PARP4Q9UKK3 1724 aaKnown RBP20.33■□□□□ 0.85
MCF2L-210ENST00000409954 NFAT5O94916 1531 aa20.33■□□□□ 0.85
MCF2L-210ENST00000409954 ANKRD24Q8TF21 1146 aa20.33■□□□□ 0.85
MCF2L-210ENST00000409954 ABCC6O95255 1503 aa20.32■□□□□ 0.84
MCF2L-210ENST00000409954 IL2RBP14784 551 aa20.32■□□□□ 0.84
MCF2L-210ENST00000409954 TNS1Q9HBL0 1735 aaKnown RBP20.32■□□□□ 0.84
MCF2L-210ENST00000409954 CLSPNQ9HAW4 1339 aa20.3■□□□□ 0.84
MCF2L-210ENST00000409954 MON2Q7Z3U7 1717 aa20.29■□□□□ 0.84
MCF2L-210ENST00000409954 ANKRD36BQ8N2N9 1353 aa20.27■□□□□ 0.84
MCF2L-210ENST00000409954 AMPHP49418 695 aa20.27■□□□□ 0.84
MCF2L-210ENST00000409954 PTF1AQ7RTS3 328 aa20.27■□□□□ 0.84
MCF2L-210ENST00000409954 PROM2Q8N271 834 aa20.27■□□□□ 0.84
MCF2L-210ENST00000409954 LRP5O75197 1615 aa20.27■□□□□ 0.83
MCF2L-210ENST00000409954 USP47Q96K76 1375 aa20.26■□□□□ 0.83
MCF2L-210ENST00000409954 FYB1O15117 783 aa20.26■□□□□ 0.83
MCF2L-210ENST00000409954 SPON1Q9HCB6 807 aa20.26■□□□□ 0.83
MCF2L-210ENST00000409954 KCNQ2O43526 872 aa20.24■□□□□ 0.83
MCF2L-210ENST00000409954 TXNRD1Q16881 649 aa20.24■□□□□ 0.83
MCF2L-210ENST00000409954 PCGF6Q9BYE7 350 aa20.24■□□□□ 0.83
MCF2L-210ENST00000409954 PEAK1Q9H792 1746 aa20.24■□□□□ 0.83
MCF2L-210ENST00000409954 MAP3K19Q56UN5 1328 aa20.24■□□□□ 0.83
MCF2L-210ENST00000409954 HOXC9P31274 260 aa20.23■□□□□ 0.83
MCF2L-210ENST00000409954 LTV1Q96GA3 475 aaPredicted RBP20.23■□□□□ 0.83
MCF2L-210ENST00000409954 LRRC37A3O60309 1634 aa20.23■□□□□ 0.83
MCF2L-210ENST00000409954 USP54Q70EL1 1684 aa20.22■□□□□ 0.83
MCF2L-210ENST00000409954 TNS2Q63HR2 1409 aa20.21■□□□□ 0.83
MCF2L-210ENST00000409954 GGNBP2Q9H3C7 697 aa20.21■□□□□ 0.83
MCF2L-210ENST00000409954 RGPD5Q99666 1765 aa20.21■□□□□ 0.83
MCF2L-210ENST00000409954 FBLN1P23142 703 aa20.2■□□□□ 0.82
MCF2L-210ENST00000409954 ACSBG1Q96GR2 724 aa20.2■□□□□ 0.82
MCF2L-210ENST00000409954 STK32BQ9NY57 414 aa20.2■□□□□ 0.82
MCF2L-210ENST00000409954 DDX54Q8TDD1 881 aaKnown RBP20.19■□□□□ 0.82
MCF2L-210ENST00000409954 SLC15A2Q16348 729 aa20.18■□□□□ 0.82
MCF2L-210ENST00000409954 PPP1R1BQ9UD71 204 aaPredicted RBP20.18■□□□□ 0.82
MCF2L-210ENST00000409954 RREB1Q92766 1687 aa20.17■□□□□ 0.82
MCF2L-210ENST00000409954 ANO8Q9HCE9 1232 aaPredicted RBP20.17■□□□□ 0.82
MCF2L-210ENST00000409954 RRS1Q15050 365 aaKnown RBP20.16■□□□□ 0.82
MCF2L-210ENST00000409954 ZCRB1Q8TBF4 217 aaKnown RBP20.16■□□□□ 0.82
MCF2L-210ENST00000409954 SBF2Q86WG5 1849 aa20.15■□□□□ 0.82
MCF2L-210ENST00000409954 RTL1A6NKG5 1358 aa20.14■□□□□ 0.81
MCF2L-210ENST00000409954 CGNL1Q0VF96 1302 aa20.14■□□□□ 0.81
MCF2L-210ENST00000409954 CARD14Q9BXL6 1004 aa20.14■□□□□ 0.81
MCF2L-210ENST00000409954 NUP188Q5SRE5 1749 aa20.13■□□□□ 0.81
MCF2L-210ENST00000409954 DCAF8L1A6NGE4 600 aa20.13■□□□□ 0.81
MCF2L-210ENST00000409954 NBPF6Q5VWK0 638 aa20.13■□□□□ 0.81
MCF2L-210ENST00000409954 NBPF4Q96M43 638 aa20.13■□□□□ 0.81
MCF2L-210ENST00000409954 KIF24Q5T7B8 1368 aa20.12■□□□□ 0.81
MCF2L-210ENST00000409954 RAPGEF4Q8WZA2 1011 aa20.12■□□□□ 0.81
MCF2L-210ENST00000409954 RGPD3A6NKT7 1758 aaPredicted RBP20.12■□□□□ 0.81
MCF2L-210ENST00000409954 RGPD4Q7Z3J3 1758 aa20.12■□□□□ 0.81
MCF2L-210ENST00000409954 LTN1O94822 1766 aa20.11■□□□□ 0.81
MCF2L-210ENST00000409954 SLC27A3Q5K4L6 730 aa20.11■□□□□ 0.81
MCF2L-210ENST00000409954 WNK3Q9BYP7 1800 aa20.11■□□□□ 0.81
MCF2L-210ENST00000409954 PRIM1P49642 420 aaKnown RBP20.1■□□□□ 0.81
MCF2L-210ENST00000409954 HSP90AB2PQ58FF8 381 aa20.1■□□□□ 0.81
MCF2L-210ENST00000409954 INSRP06213 1382 aa20.09■□□□□ 0.81
MCF2L-210ENST00000409954 TATP17735 454 aaPredicted RBP20.09■□□□□ 0.81
MCF2L-210ENST00000409954 EIF4G2P78344 907 aaKnown RBP eCLIP20.09■□□□□ 0.81
MCF2L-210ENST00000409954 SMG6Q86US8 1419 aaKnown RBP20.09■□□□□ 0.81
MCF2L-210ENST00000409954 ZBTB7AO95365 584 aa20.08■□□□□ 0.81
MCF2L-210ENST00000409954 HMGB2P26583 209 aaKnown RBP20.08■□□□□ 0.81
MCF2L-210ENST00000409954 SYTL4Q96C24 671 aaPredicted RBP20.08■□□□□ 0.81
MCF2L-210ENST00000409954 PDGFDQ9GZP0 370 aaPredicted RBP20.08■□□□□ 0.81
MCF2L-210ENST00000409954 MTFR1LQ9H019 292 aa20.08■□□□□ 0.81
MCF2L-210ENST00000409954 CCER1Q8TC90 406 aaPredicted RBP20.07■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms