RNA–Protein interactions for RNA: ENST00000395454.6

SCAF11-204, Transcript of SR-related CTD associated factor 11, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCAF11, Length 1,931 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-204ENST00000395454 EMILIN1Q9Y6C2 1016 aa20.04■□□□□ 0.8
SCAF11-204ENST00000395454 LTN1O94822 1766 aa20.04■□□□□ 0.8
SCAF11-204ENST00000395454 ADAMTS2O95450 1211 aa20.04■□□□□ 0.8
SCAF11-204ENST00000395454 WDR43Q15061 677 aaKnown RBP eCLIP20.04■□□□□ 0.8
SCAF11-204ENST00000395454 POLKQ9UBT6 870 aa20.04■□□□□ 0.8
SCAF11-204ENST00000395454 KIAA0232Q92628 1395 aa20.03■□□□□ 0.8
SCAF11-204ENST00000395454 MAP3K19Q56UN5 1328 aa20.03■□□□□ 0.8
SCAF11-204ENST00000395454 ARHGEF25Q86VW2 580 aa20.02■□□□□ 0.8
SCAF11-204ENST00000395454 PRDM11Q9NQV5 511 aa20.02■□□□□ 0.8
SCAF11-204ENST00000395454 AMPHP49418 695 aa20.02■□□□□ 0.79
SCAF11-204ENST00000395454 MTHFSP49914 203 aa20.02■□□□□ 0.79
SCAF11-204ENST00000395454 CPDO75976 1380 aa20■□□□□ 0.79
SCAF11-204ENST00000395454 CHRNA2Q15822 529 aa20■□□□□ 0.79
SCAF11-204ENST00000395454 ZNF521Q96K83 1311 aa19.99■□□□□ 0.79
SCAF11-204ENST00000395454 LRP6O75581 1613 aa19.98■□□□□ 0.79
SCAF11-204ENST00000395454 FLT4P35916 1363 aa19.97■□□□□ 0.79
SCAF11-204ENST00000395454 FAM83GA6ND36 823 aa19.97■□□□□ 0.79
SCAF11-204ENST00000395454 HOXC9P31274 260 aa19.97■□□□□ 0.79
SCAF11-204ENST00000395454 ILDR1Q86SU0 546 aaPredicted RBP19.97■□□□□ 0.79
SCAF11-204ENST00000395454 NGEFQ8N5V2 710 aa19.97■□□□□ 0.79
SCAF11-204ENST00000395454 PEAK1Q9H792 1746 aa19.97■□□□□ 0.79
SCAF11-204ENST00000395454 COL3A1P02461 1466 aaPredicted RBP19.96■□□□□ 0.79
SCAF11-204ENST00000395454 HSP90AB2PQ58FF8 381 aa19.96■□□□□ 0.79
SCAF11-204ENST00000395454 MEX3CQ5U5Q3 659 aaKnown RBP19.96■□□□□ 0.79
SCAF11-204ENST00000395454 C8orf37Q96NL8 207 aa19.96■□□□□ 0.79
SCAF11-204ENST00000395454 RTL1A6NKG5 1358 aa19.95■□□□□ 0.78
SCAF11-204ENST00000395454 IP6K1Q92551 441 aa19.95■□□□□ 0.78
SCAF11-204ENST00000395454 AXIN2Q9Y2T1 843 aa19.95■□□□□ 0.78
SCAF11-204ENST00000395454 KIF24Q5T7B8 1368 aa19.95■□□□□ 0.78
SCAF11-204ENST00000395454 CDK12Q9NYV4 1490 aaPredicted RBP19.95■□□□□ 0.78
SCAF11-204ENST00000395454 CFAP53Q96M91 514 aa19.94■□□□□ 0.78
SCAF11-204ENST00000395454 RGPD5Q99666 1765 aa19.93■□□□□ 0.78
SCAF11-204ENST00000395454 COL14A1Q05707 1796 aaKnown RBP19.93■□□□□ 0.78
SCAF11-204ENST00000395454 LTV1Q96GA3 475 aaPredicted RBP19.92■□□□□ 0.78
SCAF11-204ENST00000395454 BTG4Q9NY30 223 aa19.92■□□□□ 0.78
SCAF11-204ENST00000395454 COL18A1P39060 1754 aa19.92■□□□□ 0.78
SCAF11-204ENST00000395454 NGLY1Q96IV0 654 aa19.92■□□□□ 0.78
SCAF11-204ENST00000395454 ABCC6O95255 1503 aa19.91■□□□□ 0.78
SCAF11-204ENST00000395454 LMO7Q8WWI1 1683 aa19.9■□□□□ 0.78
SCAF11-204ENST00000395454 CAMTA1Q9Y6Y1 1673 aa19.9■□□□□ 0.78
SCAF11-204ENST00000395454 SENP3-EIF4A1A0A087X0R7 540 aa19.89■□□□□ 0.77
SCAF11-204ENST00000395454 NCBP3Q53F19 620 aaKnown RBP19.89■□□□□ 0.77
SCAF11-204ENST00000395454 PLCH1Q4KWH8 1693 aa19.89■□□□□ 0.77
SCAF11-204ENST00000395454 DIAPH1O60610 1272 aaKnown RBP19.88■□□□□ 0.77
SCAF11-204ENST00000395454 ANKRD24Q8TF21 1146 aa19.88■□□□□ 0.77
SCAF11-204ENST00000395454 STRN4Q9NRL3 753 aa19.88■□□□□ 0.77
SCAF11-204ENST00000395454 ERBB3P21860 1342 aa19.88■□□□□ 0.77
SCAF11-204ENST00000395454 CSB-PGBD3P0DP91 1061 aa19.88■□□□□ 0.77
SCAF11-204ENST00000395454 EVA1CP58658 441 aa19.88■□□□□ 0.77
SCAF11-204ENST00000395454 EIF4A2Q14240 407 aaKnown RBP19.88■□□□□ 0.77
SCAF11-204ENST00000395454 COL5A2P05997 1499 aaPredicted RBP19.87■□□□□ 0.77
SCAF11-204ENST00000395454 CDCA7LQ96GN5 454 aa19.87■□□□□ 0.77
SCAF11-204ENST00000395454 SLIT2O94813 1529 aa19.86■□□□□ 0.77
SCAF11-204ENST00000395454 IL13P35225 146 aa19.85■□□□□ 0.77
SCAF11-204ENST00000395454 TRMT2AQ8IZ69 625 aaKnown RBP19.85■□□□□ 0.77
SCAF11-204ENST00000395454 SALL2Q9Y467 1007 aaPredicted RBP19.85■□□□□ 0.77
SCAF11-204ENST00000395454 U2SURPO15042 1029 aaKnown RBP19.84■□□□□ 0.77
SCAF11-204ENST00000395454 PELP1Q8IZL8 1130 aaKnown RBP19.84■□□□□ 0.77
SCAF11-204ENST00000395454 FNBP4Q8N3X1 1017 aaPredicted RBP19.84■□□□□ 0.77
SCAF11-204ENST00000395454 NWD2Q9ULI1 1742 aa19.84■□□□□ 0.77
SCAF11-204ENST00000395454 PHF23Q9BUL5 403 aaPredicted RBP19.84■□□□□ 0.77
SCAF11-204ENST00000395454 RCAN3Q9UKA8 241 aa19.84■□□□□ 0.77
SCAF11-204ENST00000395454 AFF2P51816 1311 aa19.83■□□□□ 0.77
SCAF11-204ENST00000395454 APAF1O14727 1248 aa19.83■□□□□ 0.77
SCAF11-204ENST00000395454 USP21Q9UK80 565 aa19.83■□□□□ 0.77
SCAF11-204ENST00000395454 WDR17Q8IZU2 1322 aa19.83■□□□□ 0.76
SCAF11-204ENST00000395454 GOLGA2Q08379 1002 aa19.82■□□□□ 0.76
SCAF11-204ENST00000395454 LARP1Q6PKG0 1096 aaKnown RBP19.82■□□□□ 0.76
SCAF11-204ENST00000395454 TOM1L2Q6ZVM7 507 aa19.82■□□□□ 0.76
SCAF11-204ENST00000395454 UNC5CLQ8IV45 518 aa19.82■□□□□ 0.76
SCAF11-204ENST00000395454 CCDC146Q8IYE0 955 aa19.82■□□□□ 0.76
SCAF11-204ENST00000395454 RUNDC1Q96C34 613 aa19.82■□□□□ 0.76
SCAF11-204ENST00000395454 NLRP2Q9NX02 1062 aa19.82■□□□□ 0.76
SCAF11-204ENST00000395454 PPP4R2Q9NY27 417 aa19.82■□□□□ 0.76
SCAF11-204ENST00000395454 BCL9LQ86UU0 1499 aa19.82■□□□□ 0.76
SCAF11-204ENST00000395454 IRX6P78412 446 aaPredicted RBP19.82■□□□□ 0.76
SCAF11-204ENST00000395454 DUSP27Q5VZP5 1158 aa19.82■□□□□ 0.76
SCAF11-204ENST00000395454 NRAPQ86VF7 1730 aa19.82■□□□□ 0.76
SCAF11-204ENST00000395454 RGPD2P0DJD1 1756 aa19.81■□□□□ 0.76
SCAF11-204ENST00000395454 EYA1Q99502 592 aa19.81■□□□□ 0.76
SCAF11-204ENST00000395454 USP35Q9P2H5 1018 aa19.81■□□□□ 0.76
SCAF11-204ENST00000395454 SLFN5Q08AF3 891 aa19.8■□□□□ 0.76
SCAF11-204ENST00000395454 NBPF6Q5VWK0 638 aa19.8■□□□□ 0.76
SCAF11-204ENST00000395454 NBPF4Q96M43 638 aa19.8■□□□□ 0.76
SCAF11-204ENST00000395454 U2AF1L5P0DN76 240 aaPredicted RBP19.8■□□□□ 0.76
SCAF11-204ENST00000395454 U2AF1Q01081 240 aaKnown RBP eCLIP19.8■□□□□ 0.76
SCAF11-204ENST00000395454 USHBP1Q8N6Y0 703 aa19.8■□□□□ 0.76
SCAF11-204ENST00000395454 FAM208AQ9UK61 1670 aaKnown RBP19.79■□□□□ 0.76
SCAF11-204ENST00000395454 RRP1P56182 461 aaKnown RBP19.79■□□□□ 0.76
SCAF11-204ENST00000395454 CCDC27Q2M243 656 aa19.79■□□□□ 0.76
SCAF11-204ENST00000395454 CCDC9Q9Y3X0 531 aaKnown RBP19.79■□□□□ 0.76
SCAF11-204ENST00000395454 CRB1P82279 1406 aa19.78■□□□□ 0.76
SCAF11-204ENST00000395454 HMOX1P09601 288 aa19.78■□□□□ 0.76
SCAF11-204ENST00000395454 SULT6B1Q6IMI4 303 aa19.77■□□□□ 0.76
SCAF11-204ENST00000395454 IGSF1Q8N6C5 1336 aa19.77■□□□□ 0.76
SCAF11-204ENST00000395454 RGPD1P0DJD0 1748 aa19.76■□□□□ 0.75
SCAF11-204ENST00000395454 TNKS1BP1Q9C0C2 1729 aaKnown RBP19.76■□□□□ 0.75
SCAF11-204ENST00000395454 AEBP1Q8IUX7 1158 aa19.76■□□□□ 0.75
SCAF11-204ENST00000395454 E9PSI1 815 aa19.75■□□□□ 0.75
SCAF11-204ENST00000395454 WWC1Q8IX03 1113 aa19.75■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 142.5 ms