RNA–Protein interactions for RNA: ENST00000391813.5

SHANK1-203, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 1 (best) BASIC

Gene SHANK1, Length 4,785 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-203ENST00000391813 SLFN5Q08AF3 891 aa23.51■■□□□ 1.35
SHANK1-203ENST00000391813 SPC24Q8NBT2 197 aa23.51■■□□□ 1.35
SHANK1-203ENST00000391813 OLFM4Q6UX06 510 aa23.5■■□□□ 1.35
SHANK1-203ENST00000391813 H0YHG0 523 aa23.5■■□□□ 1.35
SHANK1-203ENST00000391813 CHD1LQ86WJ1 897 aa23.5■■□□□ 1.35
SHANK1-203ENST00000391813 AEBP1Q8IUX7 1158 aa23.5■■□□□ 1.35
SHANK1-203ENST00000391813 ZNF518AQ6AHZ1 1483 aa23.5■■□□□ 1.35
SHANK1-203ENST00000391813 GNAI3P08754 354 aa23.5■■□□□ 1.35
SHANK1-203ENST00000391813 CLSTN1O94985 981 aa23.49■■□□□ 1.35
SHANK1-203ENST00000391813 PDIA4P13667 645 aaKnown RBP23.49■■□□□ 1.35
SHANK1-203ENST00000391813 CNTROBQ8N137 903 aa23.49■■□□□ 1.35
SHANK1-203ENST00000391813 CCDC47Q96A33 483 aaKnown RBP23.49■■□□□ 1.35
SHANK1-203ENST00000391813 NUP153P49790 1475 aaKnown RBP23.49■■□□□ 1.35
SHANK1-203ENST00000391813 APPP05067 770 aa23.48■■□□□ 1.35
SHANK1-203ENST00000391813 G3BP1Q13283 466 aaKnown RBP eCLIP23.48■■□□□ 1.35
SHANK1-203ENST00000391813 TSPYL1Q9H0U9 437 aa23.48■■□□□ 1.35
SHANK1-203ENST00000391813 CCDC27Q2M243 656 aa23.48■■□□□ 1.35
SHANK1-203ENST00000391813 CEBPAP49715 358 aaPredicted RBP23.47■■□□□ 1.35
SHANK1-203ENST00000391813 TBC1D2Q9BYX2 928 aa23.47■■□□□ 1.35
SHANK1-203ENST00000391813 TATP17735 454 aaPredicted RBP23.47■■□□□ 1.35
SHANK1-203ENST00000391813 FBXO31Q5XUX0 539 aaPredicted RBP23.47■■□□□ 1.35
SHANK1-203ENST00000391813 SLC12A5Q9H2X9 1139 aa23.47■■□□□ 1.35
SHANK1-203ENST00000391813 TNRQ92752 1358 aa23.47■■□□□ 1.35
SHANK1-203ENST00000391813 RDXP35241 583 aaKnown RBP23.47■■□□□ 1.35
SHANK1-203ENST00000391813 ABCC2Q92887 1545 aa23.46■■□□□ 1.35
SHANK1-203ENST00000391813 EIF2S2P20042 333 aaKnown RBP23.46■■□□□ 1.35
SHANK1-203ENST00000391813 HMGB2P26583 209 aaKnown RBP23.46■■□□□ 1.35
SHANK1-203ENST00000391813 PRDM11Q9NQV5 511 aa23.46■■□□□ 1.35
SHANK1-203ENST00000391813 ZNF428Q96B54 188 aa23.46■■□□□ 1.35
SHANK1-203ENST00000391813 KIAA0556O60303 1618 aa23.46■■□□□ 1.35
SHANK1-203ENST00000391813 DYNC1I1O14576 645 aa23.45■■□□□ 1.35
SHANK1-203ENST00000391813 KRT85P78386 507 aa23.45■■□□□ 1.35
SHANK1-203ENST00000391813 TRDNQ13061 729 aa23.45■■□□□ 1.35
SHANK1-203ENST00000391813 TSPYL4Q9UJ04 414 aa23.45■■□□□ 1.34
SHANK1-203ENST00000391813 NOB1Q9ULX3 412 aaKnown RBP23.45■■□□□ 1.34
SHANK1-203ENST00000391813 KIF2AO00139 706 aaPredicted RBP23.44■■□□□ 1.34
SHANK1-203ENST00000391813 HMOX1P09601 288 aa23.44■■□□□ 1.34
SHANK1-203ENST00000391813 TNMDQ9H2S6 317 aa23.44■■□□□ 1.34
SHANK1-203ENST00000391813 SMC2O95347 1197 aa23.43■■□□□ 1.34
SHANK1-203ENST00000391813 FBXW7Q969H0 707 aa23.43■■□□□ 1.34
SHANK1-203ENST00000391813 PCMTD1Q96MG8 357 aaPredicted RBP23.43■■□□□ 1.34
SHANK1-203ENST00000391813 NUDT16Q96DE0 195 aaKnown RBP23.43■■□□□ 1.34
SHANK1-203ENST00000391813 KCNH5Q8NCM2 988 aa23.43■■□□□ 1.34
SHANK1-203ENST00000391813 A2MP01023 1474 aa23.42■■□□□ 1.34
SHANK1-203ENST00000391813 SAFBQ15424 915 aaKnown RBP eCLIP23.42■■□□□ 1.34
SHANK1-203ENST00000391813 ABCC10Q5T3U5 1492 aa23.42■■□□□ 1.34
SHANK1-203ENST00000391813 PHF23Q9BUL5 403 aaPredicted RBP23.42■■□□□ 1.34
SHANK1-203ENST00000391813 UBTFL1P0CB47 393 aaPredicted RBP23.42■■□□□ 1.34
SHANK1-203ENST00000391813 KDM5BQ9UGL1 1544 aa23.42■■□□□ 1.34
SHANK1-203ENST00000391813 SYCE3A1L190 88 aa23.41■■□□□ 1.34
SHANK1-203ENST00000391813 HIP1O00291 1037 aa23.41■■□□□ 1.34
SHANK1-203ENST00000391813 EIF3JO75822 258 aaKnown RBP23.41■■□□□ 1.34
SHANK1-203ENST00000391813 BCL11BQ9C0K0 894 aaPredicted RBP23.41■■□□□ 1.34
SHANK1-203ENST00000391813 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP23.41■■□□□ 1.34
SHANK1-203ENST00000391813 PDILTQ8N807 584 aa23.41■■□□□ 1.34
SHANK1-203ENST00000391813 STRN4Q9NRL3 753 aa23.41■■□□□ 1.34
SHANK1-203ENST00000391813 AMOTL2Q9Y2J4 779 aa23.41■■□□□ 1.34
SHANK1-203ENST00000391813 ERLIN1O75477 346 aa23.41■■□□□ 1.34
SHANK1-203ENST00000391813 CLASRPQ8N2M8 674 aaKnown RBP23.41■■□□□ 1.34
SHANK1-203ENST00000391813 DCTN1Q14203 1278 aa23.4■■□□□ 1.34
SHANK1-203ENST00000391813 ZNF396Q96N95 335 aaPredicted RBP23.4■■□□□ 1.34
SHANK1-203ENST00000391813 USP8P40818 1118 aa23.4■■□□□ 1.34
SHANK1-203ENST00000391813 TOM1L2Q6ZVM7 507 aa23.39■■□□□ 1.34
SHANK1-203ENST00000391813 XPCQ01831 940 aaPredicted RBP23.39■■□□□ 1.33
SHANK1-203ENST00000391813 MPNDQ8N594 471 aa23.39■■□□□ 1.33
SHANK1-203ENST00000391813 PIP4K2BP78356 416 aa23.39■■□□□ 1.33
SHANK1-203ENST00000391813 TNPO1Q92973 898 aaKnown RBP23.39■■□□□ 1.33
SHANK1-203ENST00000391813 CALCOCO1Q9P1Z2 691 aa23.38■■□□□ 1.33
SHANK1-203ENST00000391813 NUTM2BA6NNL0 878 aaPredicted RBP23.38■■□□□ 1.33
SHANK1-203ENST00000391813 NUTM2EB1AL46 878 aaPredicted RBP23.38■■□□□ 1.33
SHANK1-203ENST00000391813 NUTM2AQ8IVF1 878 aaPredicted RBP23.38■■□□□ 1.33
SHANK1-203ENST00000391813 ANKRD1Q15327 319 aa23.37■■□□□ 1.33
SHANK1-203ENST00000391813 TWISTNBQ3B726 338 aaPredicted RBP23.37■■□□□ 1.33
SHANK1-203ENST00000391813 CBX1P83916 185 aa23.37■■□□□ 1.33
SHANK1-203ENST00000391813 MARCH6O60337 910 aa23.36■■□□□ 1.33
SHANK1-203ENST00000391813 PRIMPOLQ96LW4 560 aa23.36■■□□□ 1.33
SHANK1-203ENST00000391813 CTTNBP2Q8WZ74 1663 aa23.36■■□□□ 1.33
SHANK1-203ENST00000391813 SF3B2Q13435 895 aaKnown RBP23.36■■□□□ 1.33
SHANK1-203ENST00000391813 NUP62CLQ9H1M0 184 aa23.36■■□□□ 1.33
SHANK1-203ENST00000391813 CYP46A1Q9Y6A2 500 aa23.36■■□□□ 1.33
SHANK1-203ENST00000391813 CCDC191Q8NCU4 936 aa23.36■■□□□ 1.33
SHANK1-203ENST00000391813 SPG7Q9UQ90 795 aa23.36■■□□□ 1.33
SHANK1-203ENST00000391813 C20orf194Q5TEA3 1177 aa23.36■■□□□ 1.33
SHANK1-203ENST00000391813 SMARCE1Q969G3 411 aa23.36■■□□□ 1.33
SHANK1-203ENST00000391813 DUOX2Q9NRD8 1548 aa23.35■■□□□ 1.33
SHANK1-203ENST00000391813 TSR2Q969E8 191 aaKnown RBP23.35■■□□□ 1.33
SHANK1-203ENST00000391813 SRCIN1Q9C0H9 1055 aa23.35■■□□□ 1.33
SHANK1-203ENST00000391813 RALYLQ86SE5 291 aaKnown RBP23.35■■□□□ 1.33
SHANK1-203ENST00000391813 KLHL40Q2TBA0 621 aa23.34■■□□□ 1.33
SHANK1-203ENST00000391813 ZSCAN31Q96LW9 406 aaPredicted RBP23.34■■□□□ 1.33
SHANK1-203ENST00000391813 TBC1D32Q96NH3 1257 aa23.34■■□□□ 1.33
SHANK1-203ENST00000391813 C1orf115Q9H7X2 142 aa23.34■■□□□ 1.33
SHANK1-203ENST00000391813 LRPPRCP42704 1394 aaKnown RBP23.34■■□□□ 1.33
SHANK1-203ENST00000391813 FILIP1LQ4L180 1135 aa23.34■■□□□ 1.33
SHANK1-203ENST00000391813 CADPS2Q86UW7 1296 aa23.34■■□□□ 1.33
SHANK1-203ENST00000391813 UBXN4Q92575 508 aa23.34■■□□□ 1.33
SHANK1-203ENST00000391813 SURF6O75683 361 aaKnown RBP23.34■■□□□ 1.33
SHANK1-203ENST00000391813 GNAI2P04899 355 aa23.34■■□□□ 1.33
SHANK1-203ENST00000391813 XRCC6P12956 609 aaKnown RBP eCLIP23.34■■□□□ 1.33
SHANK1-203ENST00000391813 WWC1Q8IX03 1113 aa23.34■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms