RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 KIF24Q5T7B8 1368 aa32.6■■■□□ 2.81
SHOX2-201ENST00000389589 LMOD3Q0VAK6 560 aa32.59■■■□□ 2.81
SHOX2-201ENST00000389589 HSP90AB2PQ58FF8 381 aa32.59■■■□□ 2.81
SHOX2-201ENST00000389589 SOX12O15370 315 aa32.58■■■□□ 2.81
SHOX2-201ENST00000389589 PROSER2Q86WR7 435 aaPredicted RBP32.58■■■□□ 2.81
SHOX2-201ENST00000389589 ABTB2Q8N961 1025 aa32.58■■■□□ 2.81
SHOX2-201ENST00000389589 TSR2Q969E8 191 aaKnown RBP32.57■■■□□ 2.8
SHOX2-201ENST00000389589 CANXP27824 592 aaKnown RBP32.57■■■□□ 2.8
SHOX2-201ENST00000389589 ESCO1Q5FWF5 840 aa32.57■■■□□ 2.8
SHOX2-201ENST00000389589 PAK3O75914 559 aaPredicted RBP32.56■■■□□ 2.8
SHOX2-201ENST00000389589 ARHGEF10O15013 1369 aa32.55■■■□□ 2.8
SHOX2-201ENST00000389589 AMPHP49418 695 aa32.54■■■□□ 2.8
SHOX2-201ENST00000389589 SULT6B1Q6IMI4 303 aa32.54■■■□□ 2.8
SHOX2-201ENST00000389589 EXOSC9Q06265 439 aaKnown RBP32.54■■■□□ 2.8
SHOX2-201ENST00000389589 PSME1Q06323 249 aa32.52■■■□□ 2.8
SHOX2-201ENST00000389589 KIF1AQ12756 1690 aa32.51■■■□□ 2.8
SHOX2-201ENST00000389589 AEBP1Q8IUX7 1158 aa32.49■■■□□ 2.79
SHOX2-201ENST00000389589 C19orf44Q9H6X5 657 aa32.49■■■□□ 2.79
SHOX2-201ENST00000389589 FRAT1Q92837 279 aaPredicted RBP32.48■■■□□ 2.79
SHOX2-201ENST00000389589 IFT57Q9NWB7 429 aa32.48■■■□□ 2.79
SHOX2-201ENST00000389589 LTN1O94822 1766 aa32.48■■■□□ 2.79
SHOX2-201ENST00000389589 NCOA3Q9Y6Q9 1424 aa32.48■■■□□ 2.79
SHOX2-201ENST00000389589 GNAI1P63096 354 aa32.47■■■□□ 2.79
SHOX2-201ENST00000389589 NUTM2GQ5VZR2 741 aa32.47■■■□□ 2.79
SHOX2-201ENST00000389589 STRCP1A6NGW2 1772 aa32.47■■■□□ 2.79
SHOX2-201ENST00000389589 RBM19Q9Y4C8 960 aaKnown RBP32.46■■■□□ 2.79
SHOX2-201ENST00000389589 RTL1A6NKG5 1358 aa32.46■■■□□ 2.79
SHOX2-201ENST00000389589 KDRP35968 1356 aa32.44■■■□□ 2.78
SHOX2-201ENST00000389589 ZNF428Q96B54 188 aa32.44■■■□□ 2.78
SHOX2-201ENST00000389589 IGSF1Q8N6C5 1336 aa32.43■■■□□ 2.78
SHOX2-201ENST00000389589 HOXC9P31274 260 aa32.43■■■□□ 2.78
SHOX2-201ENST00000389589 AAMPQ13685 434 aa32.43■■■□□ 2.78
SHOX2-201ENST00000389589 C1orf167Q5SNV9 1468 aa32.43■■■□□ 2.78
SHOX2-201ENST00000389589 ZNF853P0CG23 659 aa32.42■■■□□ 2.78
SHOX2-201ENST00000389589 ORAI2Q96SN7 254 aa32.42■■■□□ 2.78
SHOX2-201ENST00000389589 MS4A1P11836 297 aa32.42■■■□□ 2.78
SHOX2-201ENST00000389589 BCL2L13Q9BXK5 485 aa32.42■■■□□ 2.78
SHOX2-201ENST00000389589 NFAT5O94916 1531 aa32.42■■■□□ 2.78
SHOX2-201ENST00000389589 DCCP43146 1447 aa32.41■■■□□ 2.78
SHOX2-201ENST00000389589 SMC4Q9NTJ3 1288 aa32.41■■■□□ 2.78
SHOX2-201ENST00000389589 LAS1LQ9Y4W2 734 aaKnown RBP32.41■■■□□ 2.78
SHOX2-201ENST00000389589 CENPQQ7L2Z9 268 aaPredicted RBP32.4■■■□□ 2.78
SHOX2-201ENST00000389589 KCNH5Q8NCM2 988 aa32.4■■■□□ 2.78
SHOX2-201ENST00000389589 PANK1Q8TE04 598 aa32.4■■■□□ 2.78
SHOX2-201ENST00000389589 THUMPD2Q9BTF0 503 aaKnown RBP32.4■■■□□ 2.78
SHOX2-201ENST00000389589 TRPM3Q9HCF6 1732 aaPredicted RBP32.4■■■□□ 2.78
SHOX2-201ENST00000389589 KDM2BQ8NHM5 1336 aa32.4■■■□□ 2.78
SHOX2-201ENST00000389589 ZKSCAN2Q63HK3 967 aa32.39■■■□□ 2.78
SHOX2-201ENST00000389589 CFAP44Q96MT7 982 aa32.39■■■□□ 2.78
SHOX2-201ENST00000389589 PHRF1Q9P1Y6 1649 aaKnown RBP32.39■■■□□ 2.78
SHOX2-201ENST00000389589 ALDH1L2Q3SY69 923 aa32.39■■■□□ 2.78
SHOX2-201ENST00000389589 EYA1Q99502 592 aa32.38■■■□□ 2.77
SHOX2-201ENST00000389589 TMEM94Q12767 1356 aa32.37■■■□□ 2.77
SHOX2-201ENST00000389589 SSH1Q8WYL5 1049 aa32.37■■■□□ 2.77
SHOX2-201ENST00000389589 COG6Q9Y2V7 657 aa32.37■■■□□ 2.77
SHOX2-201ENST00000389589 FOXO3O43524 673 aa32.36■■■□□ 2.77
SHOX2-201ENST00000389589 ATF3P18847 181 aa32.35■■■□□ 2.77
SHOX2-201ENST00000389589 HSPA2P54652 639 aa32.35■■■□□ 2.77
SHOX2-201ENST00000389589 TCERG1O14776 1098 aaKnown RBP32.34■■■□□ 2.77
SHOX2-201ENST00000389589 MBIPQ9NS73 344 aa32.34■■■□□ 2.77
SHOX2-201ENST00000389589 SLIT3O75094 1523 aa32.33■■■□□ 2.77
SHOX2-201ENST00000389589 FAM83GA6ND36 823 aa32.33■■■□□ 2.77
SHOX2-201ENST00000389589 KIF16BQ96L93 1317 aa32.33■■■□□ 2.77
SHOX2-201ENST00000389589 MST1RQ04912 1400 aa32.33■■■□□ 2.77
SHOX2-201ENST00000389589 IP6K1Q92551 441 aa32.33■■■□□ 2.77
SHOX2-201ENST00000389589 CLUAP1Q96AJ1 413 aa32.33■■■□□ 2.77
SHOX2-201ENST00000389589 LMTK3Q96Q04 1460 aa32.31■■■□□ 2.76
SHOX2-201ENST00000389589 KDM4FA0A1W2PPD8 638 aa32.31■■■□□ 2.76
SHOX2-201ENST00000389589 BRPF1P55201 1214 aaPredicted RBP32.31■■■□□ 2.76
SHOX2-201ENST00000389589 RLBP1P12271 317 aa32.3■■■□□ 2.76
SHOX2-201ENST00000389589 KRT28Q7Z3Y7 464 aa32.3■■■□□ 2.76
SHOX2-201ENST00000389589 DZIP1LQ8IYY4 767 aaKnown RBP32.3■■■□□ 2.76
SHOX2-201ENST00000389589 STRCQ7RTU9 1775 aa32.3■■■□□ 2.76
SHOX2-201ENST00000389589 IPO8O15397 1037 aaKnown RBP32.3■■■□□ 2.76
SHOX2-201ENST00000389589 GAS2L2Q8NHY3 880 aa32.3■■■□□ 2.76
SHOX2-201ENST00000389589 FTSJ3Q8IY81 847 aaKnown RBP32.29■■■□□ 2.76
SHOX2-201ENST00000389589 DCTN1Q14203 1278 aa32.28■■■□□ 2.76
SHOX2-201ENST00000389589 VAMP4O75379 141 aa32.28■■■□□ 2.76
SHOX2-201ENST00000389589 ATF7IPQ6VMQ6 1270 aa32.27■■■□□ 2.76
SHOX2-201ENST00000389589 MVPQ14764 893 aaKnown RBP32.27■■■□□ 2.76
SHOX2-201ENST00000389589 MTHFSDQ2M296 383 aaKnown RBP32.27■■■□□ 2.76
SHOX2-201ENST00000389589 TNNQ9UQP3 1299 aa32.27■■■□□ 2.76
SHOX2-201ENST00000389589 ALS2Q96Q42 1657 aa32.26■■■□□ 2.76
SHOX2-201ENST00000389589 CADPS2Q86UW7 1296 aa32.26■■■□□ 2.75
SHOX2-201ENST00000389589 USP19O94966 1318 aa32.25■■■□□ 2.75
SHOX2-201ENST00000389589 XPCQ01831 940 aaPredicted RBP32.25■■■□□ 2.75
SHOX2-201ENST00000389589 NOB1Q9ULX3 412 aaKnown RBP32.25■■■□□ 2.75
SHOX2-201ENST00000389589 TRIM27P14373 513 aa32.24■■■□□ 2.75
SHOX2-201ENST00000389589 XIRP1Q702N8 1843 aaKnown RBP32.24■■■□□ 2.75
SHOX2-201ENST00000389589 HTATSF1O43719 755 aaKnown RBP32.23■■■□□ 2.75
SHOX2-201ENST00000389589 RTF1Q92541 710 aaKnown RBP32.23■■■□□ 2.75
SHOX2-201ENST00000389589 CHL1O00533 1208 aa32.23■■■□□ 2.75
SHOX2-201ENST00000389589 GCP02774 474 aa32.23■■■□□ 2.75
SHOX2-201ENST00000389589 MSH6P52701 1360 aa32.23■■■□□ 2.75
SHOX2-201ENST00000389589 TWISTNBQ3B726 338 aaPredicted RBP32.22■■■□□ 2.75
SHOX2-201ENST00000389589 MCM10Q7L590 875 aa32.22■■■□□ 2.75
SHOX2-201ENST00000389589 LTV1Q96GA3 475 aaPredicted RBP32.22■■■□□ 2.75
SHOX2-201ENST00000389589 HAP1P54257 671 aaPredicted RBP32.22■■■□□ 2.75
SHOX2-201ENST00000389589 CRB1P82279 1406 aa32.21■■■□□ 2.75
SHOX2-201ENST00000389589 TSPYL6Q8N831 410 aa32.2■■■□□ 2.75
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms