RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 VSIG10Q8N0Z9 540 aa22.98■■□□□ 1.27
CCDC3-201ENST00000378825 PUS7Q96PZ0 661 aaKnown RBP22.98■■□□□ 1.27
CCDC3-201ENST00000378825 CABP1Q9NZU7 370 aa22.98■■□□□ 1.27
CCDC3-201ENST00000378825 YTHDC2Q9H6S0 1430 aaKnown RBP22.98■■□□□ 1.27
CCDC3-201ENST00000378825 CDK19Q9BWU1 502 aa22.98■■□□□ 1.27
CCDC3-201ENST00000378825 PTPRMP28827 1452 aa22.97■■□□□ 1.27
CCDC3-201ENST00000378825 PREX1Q8TCU6 1659 aa22.97■■□□□ 1.27
CCDC3-201ENST00000378825 TMEM131LA2VDJ0 1609 aa22.97■■□□□ 1.27
CCDC3-201ENST00000378825 PKP1Q13835 747 aa22.97■■□□□ 1.27
CCDC3-201ENST00000378825 GSPT1P15170 499 aaKnown RBP22.96■■□□□ 1.27
CCDC3-201ENST00000378825 ALDH1L2Q3SY69 923 aa22.96■■□□□ 1.27
CCDC3-201ENST00000378825 VAMP4O75379 141 aa22.96■■□□□ 1.27
CCDC3-201ENST00000378825 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.96■■□□□ 1.27
CCDC3-201ENST00000378825 MRPL50Q8N5N7 158 aaKnown RBP22.95■■□□□ 1.27
CCDC3-201ENST00000378825 CHAMP1Q96JM3 812 aa22.95■■□□□ 1.27
CCDC3-201ENST00000378825 ZFYVE9O95405 1425 aa22.95■■□□□ 1.27
CCDC3-201ENST00000378825 C16orf71Q8IYS4 520 aaPredicted RBP22.95■■□□□ 1.26
CCDC3-201ENST00000378825 TERF2IPQ9NYB0 399 aa22.95■■□□□ 1.26
CCDC3-201ENST00000378825 DDX49Q9Y6V7 483 aaKnown RBP22.95■■□□□ 1.26
CCDC3-201ENST00000378825 ISY1Q9ULR0 285 aaKnown RBP22.95■■□□□ 1.26
CCDC3-201ENST00000378825 BAG4O95429 457 aaKnown RBP22.94■■□□□ 1.26
CCDC3-201ENST00000378825 TSPOAP1O95153 1857 aa22.94■■□□□ 1.26
CCDC3-201ENST00000378825 MED14O60244 1454 aa22.93■■□□□ 1.26
CCDC3-201ENST00000378825 CD163L1Q9NR16 1453 aa22.93■■□□□ 1.26
CCDC3-201ENST00000378825 LRRC7Q96NW7 1537 aa22.93■■□□□ 1.26
CCDC3-201ENST00000378825 NASPP49321 788 aaPredicted RBP22.93■■□□□ 1.26
CCDC3-201ENST00000378825 SKOR2Q2VWA4 1001 aaPredicted RBP22.92■■□□□ 1.26
CCDC3-201ENST00000378825 GCC1Q96CN9 775 aa22.92■■□□□ 1.26
CCDC3-201ENST00000378825 OTUD7AQ8TE49 926 aaPredicted RBP22.92■■□□□ 1.26
CCDC3-201ENST00000378825 NCLP19338 710 aaKnown RBP22.91■■□□□ 1.26
CCDC3-201ENST00000378825 MCTP1Q6DN14 999 aa22.91■■□□□ 1.26
CCDC3-201ENST00000378825 RRP9O43818 475 aaKnown RBP22.9■■□□□ 1.26
CCDC3-201ENST00000378825 HDGFL2Q7Z4V5 671 aaPredicted RBP22.9■■□□□ 1.26
CCDC3-201ENST00000378825 MBIPQ9NS73 344 aa22.89■■□□□ 1.26
CCDC3-201ENST00000378825 C8orf58Q8NAV2 365 aa22.89■■□□□ 1.25
CCDC3-201ENST00000378825 APBB1O00213 710 aa22.88■■□□□ 1.25
CCDC3-201ENST00000378825 ZMYND15Q9H091 742 aa22.88■■□□□ 1.25
CCDC3-201ENST00000378825 ALKQ9UM73 1620 aa22.88■■□□□ 1.25
CCDC3-201ENST00000378825 FAM83GA6ND36 823 aa22.88■■□□□ 1.25
CCDC3-201ENST00000378825 CDC45O75419 566 aa22.88■■□□□ 1.25
CCDC3-201ENST00000378825 FCHSD2O94868 740 aa22.88■■□□□ 1.25
CCDC3-201ENST00000378825 CAVIN1Q6NZI2 390 aaKnown RBP22.88■■□□□ 1.25
CCDC3-201ENST00000378825 PLEKHM2Q8IWE5 1019 aa22.88■■□□□ 1.25
CCDC3-201ENST00000378825 POLKQ9UBT6 870 aa22.88■■□□□ 1.25
CCDC3-201ENST00000378825 PNPLA6Q8IY17 1366 aa22.88■■□□□ 1.25
CCDC3-201ENST00000378825 KIAA1211Q6ZU35 1233 aa22.88■■□□□ 1.25
CCDC3-201ENST00000378825 DCTN1Q14203 1278 aa22.87■■□□□ 1.25
CCDC3-201ENST00000378825 KLHL40Q2TBA0 621 aa22.87■■□□□ 1.25
CCDC3-201ENST00000378825 EMILIN1Q9Y6C2 1016 aa22.86■■□□□ 1.25
CCDC3-201ENST00000378825 ZGPATQ8N5A5 531 aaKnown RBP22.86■■□□□ 1.25
CCDC3-201ENST00000378825 PPP1R9BQ96SB3 815 aa22.85■■□□□ 1.25
CCDC3-201ENST00000378825 ABCC4O15439 1325 aa22.85■■□□□ 1.25
CCDC3-201ENST00000378825 FAM135BQ49AJ0 1406 aa22.85■■□□□ 1.25
CCDC3-201ENST00000378825 CCDC173Q0VFZ6 552 aa22.85■■□□□ 1.25
CCDC3-201ENST00000378825 RBM27Q9P2N5 1060 aaKnown RBP22.85■■□□□ 1.25
CCDC3-201ENST00000378825 NFE2L2Q16236 605 aa22.84■■□□□ 1.25
CCDC3-201ENST00000378825 TWISTNBQ3B726 338 aaPredicted RBP22.84■■□□□ 1.25
CCDC3-201ENST00000378825 GOLGA6L22H0YM25 854 aa22.84■■□□□ 1.25
CCDC3-201ENST00000378825 SMARCA5O60264 1052 aaPredicted RBP22.84■■□□□ 1.25
CCDC3-201ENST00000378825 BRPF1P55201 1214 aaPredicted RBP22.84■■□□□ 1.25
CCDC3-201ENST00000378825 ZRANB1Q9UGI0 708 aa22.84■■□□□ 1.25
CCDC3-201ENST00000378825 PTCH1Q13635 1447 aa22.84■■□□□ 1.25
CCDC3-201ENST00000378825 KRT24Q2M2I5 525 aa22.83■■□□□ 1.25
CCDC3-201ENST00000378825 GLIPR1L2Q4G1C9 344 aa22.83■■□□□ 1.25
CCDC3-201ENST00000378825 NCKAP5LQ9HCH0 1330 aa22.83■■□□□ 1.25
CCDC3-201ENST00000378825 PKNOX2Q96KN3 472 aa22.83■■□□□ 1.24
CCDC3-201ENST00000378825 PIK3R4Q99570 1358 aa22.83■■□□□ 1.24
CCDC3-201ENST00000378825 FOXD4L5Q5VV16 416 aaPredicted RBP22.82■■□□□ 1.24
CCDC3-201ENST00000378825 FOXD4L4Q8WXT5 416 aaPredicted RBP22.82■■□□□ 1.24
CCDC3-201ENST00000378825 RBSNQ9H1K0 784 aa22.82■■□□□ 1.24
CCDC3-201ENST00000378825 ZSCAN30Q86W11 494 aa22.82■■□□□ 1.24
CCDC3-201ENST00000378825 LMBRD1Q9NUN5 540 aa22.82■■□□□ 1.24
CCDC3-201ENST00000378825 KNDC1Q76NI1 1749 aa22.82■■□□□ 1.24
CCDC3-201ENST00000378825 ARHGEF40Q8TER5 1519 aa22.82■■□□□ 1.24
CCDC3-201ENST00000378825 ZSCAN23Q3MJ62 389 aa22.81■■□□□ 1.24
CCDC3-201ENST00000378825 CLEC17AQ6ZS10 378 aa22.81■■□□□ 1.24
CCDC3-201ENST00000378825 TXNDC2Q86VQ3 553 aa22.81■■□□□ 1.24
CCDC3-201ENST00000378825 USP26Q9BXU7 913 aa22.81■■□□□ 1.24
CCDC3-201ENST00000378825 RIMS2Q9UQ26 1411 aa22.8■■□□□ 1.24
CCDC3-201ENST00000378825 ARHGAP45Q92619 1136 aa22.8■■□□□ 1.24
CCDC3-201ENST00000378825 A2ML1A8K2U0 1454 aa22.8■■□□□ 1.24
CCDC3-201ENST00000378825 DIP2BQ9P265 1576 aa22.8■■□□□ 1.24
CCDC3-201ENST00000378825 PRIM1P49642 420 aaKnown RBP22.8■■□□□ 1.24
CCDC3-201ENST00000378825 TTC22Q5TAA0 569 aa22.8■■□□□ 1.24
CCDC3-201ENST00000378825 CLTCQ00610 1675 aaKnown RBP22.79■■□□□ 1.24
CCDC3-201ENST00000378825 RBM10P98175 930 aaKnown RBP22.79■■□□□ 1.24
CCDC3-201ENST00000378825 PRPF40AO75400 957 aaKnown RBP22.79■■□□□ 1.24
CCDC3-201ENST00000378825 NSFL1CQ9UNZ2 370 aaKnown RBP22.79■■□□□ 1.24
CCDC3-201ENST00000378825 ANKRD26Q9UPS8 1709 aa22.78■■□□□ 1.24
CCDC3-201ENST00000378825 CYP2E1P05181 493 aaPredicted RBP22.78■■□□□ 1.24
CCDC3-201ENST00000378825 ZNF853P0CG23 659 aa22.78■■□□□ 1.24
CCDC3-201ENST00000378825 RABEP1Q15276 862 aa22.78■■□□□ 1.24
CCDC3-201ENST00000378825 GPT2Q8TD30 523 aa22.78■■□□□ 1.24
CCDC3-201ENST00000378825 ZDHHC9Q9Y397 364 aa22.78■■□□□ 1.24
CCDC3-201ENST00000378825 RIMBP3CA6NJZ7 1639 aa22.78■■□□□ 1.24
CCDC3-201ENST00000378825 RIMBP3BA6NNM3 1639 aa22.78■■□□□ 1.24
CCDC3-201ENST00000378825 RIMBP3Q9UFD9 1639 aa22.78■■□□□ 1.24
CCDC3-201ENST00000378825 PTMSP20962 102 aa22.77■■□□□ 1.24
CCDC3-201ENST00000378825 GNAI1P63096 354 aa22.77■■□□□ 1.24
CCDC3-201ENST00000378825 CALD1Q05682 793 aaKnown RBP22.77■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms