RNA–Protein interactions for RNA: ENST00000377298.8

CLSTN1-202, Transcript of calsyntenin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN1, Length 5,221 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN1-202ENST00000377298 NME9Q86XW9 330 aa21.56■■□□□ 1.04
CLSTN1-202ENST00000377298 LRRCC1Q9C099 1032 aa21.56■■□□□ 1.04
CLSTN1-202ENST00000377298 SART3Q15020 963 aaKnown RBP21.56■■□□□ 1.04
CLSTN1-202ENST00000377298 FYB1O15117 783 aa21.56■■□□□ 1.04
CLSTN1-202ENST00000377298 SLFN5Q08AF3 891 aa21.55■■□□□ 1.04
CLSTN1-202ENST00000377298 AMOTQ4VCS5 1084 aa21.55■■□□□ 1.04
CLSTN1-202ENST00000377298 CCDC184Q52MB2 194 aa21.55■■□□□ 1.04
CLSTN1-202ENST00000377298 ABCC11Q96J66 1382 aa21.55■■□□□ 1.04
CLSTN1-202ENST00000377298 ZSCAN21Q9Y5A6 473 aaPredicted RBP21.54■■□□□ 1.04
CLSTN1-202ENST00000377298 TPM1P09493 284 aa21.54■■□□□ 1.04
CLSTN1-202ENST00000377298 TTC39AQ5SRH9 613 aa21.54■■□□□ 1.04
CLSTN1-202ENST00000377298 NOC3LQ8WTT2 800 aaKnown RBP21.54■■□□□ 1.04
CLSTN1-202ENST00000377298 TNRQ92752 1358 aa21.54■■□□□ 1.04
CLSTN1-202ENST00000377298 CEP89Q96ST8 783 aa21.53■■□□□ 1.04
CLSTN1-202ENST00000377298 FOXO3O43524 673 aa21.53■■□□□ 1.04
CLSTN1-202ENST00000377298 CCDC57Q2TAC2 916 aa21.53■■□□□ 1.04
CLSTN1-202ENST00000377298 NUP153P49790 1475 aaKnown RBP21.53■■□□□ 1.04
CLSTN1-202ENST00000377298 NSD2O96028 1365 aa21.53■■□□□ 1.04
CLSTN1-202ENST00000377298 XBP1P17861 261 aa21.52■■□□□ 1.04
CLSTN1-202ENST00000377298 MCM2P49736 904 aa21.52■■□□□ 1.04
CLSTN1-202ENST00000377298 DDX24Q9GZR7 859 aaKnown RBP eCLIP21.52■■□□□ 1.04
CLSTN1-202ENST00000377298 RSPH6AQ9H0K4 717 aa21.52■■□□□ 1.03
CLSTN1-202ENST00000377298 IFT57Q9NWB7 429 aa21.51■■□□□ 1.03
CLSTN1-202ENST00000377298 SLC3A2P08195 630 aaKnown RBP21.51■■□□□ 1.03
CLSTN1-202ENST00000377298 RPAP2Q8IXW5 612 aaPredicted RBP21.51■■□□□ 1.03
CLSTN1-202ENST00000377298 BRMS1Q9HCU9 246 aa21.51■■□□□ 1.03
CLSTN1-202ENST00000377298 LRPPRCP42704 1394 aaKnown RBP21.51■■□□□ 1.03
CLSTN1-202ENST00000377298 STARD3NLO95772 234 aa21.51■■□□□ 1.03
CLSTN1-202ENST00000377298 C11orf95C9JLR9 678 aaPredicted RBP21.51■■□□□ 1.03
CLSTN1-202ENST00000377298 DMRT2Q9Y5R5 561 aa21.51■■□□□ 1.03
CLSTN1-202ENST00000377298 MPHOSPH8Q99549 860 aa21.5■■□□□ 1.03
CLSTN1-202ENST00000377298 DUOX2Q9NRD8 1548 aa21.5■■□□□ 1.03
CLSTN1-202ENST00000377298 UGGT2Q9NYU1 1516 aa21.5■■□□□ 1.03
CLSTN1-202ENST00000377298 ANKRD20A12PQ8NF67 263 aa21.5■■□□□ 1.03
CLSTN1-202ENST00000377298 PPP1R1BQ9UD71 204 aaPredicted RBP21.5■■□□□ 1.03
CLSTN1-202ENST00000377298 CCDC73Q6ZRK6 1079 aa21.49■■□□□ 1.03
CLSTN1-202ENST00000377298 PRM3Q9NNZ6 103 aa21.49■■□□□ 1.03
CLSTN1-202ENST00000377298 WDR7Q9Y4E6 1490 aa21.49■■□□□ 1.03
CLSTN1-202ENST00000377298 RABEP1Q15276 862 aa21.49■■□□□ 1.03
CLSTN1-202ENST00000377298 SRGAP3O43295 1099 aa21.49■■□□□ 1.03
CLSTN1-202ENST00000377298 DUSP27Q5VZP5 1158 aa21.49■■□□□ 1.03
CLSTN1-202ENST00000377298 A2MP01023 1474 aa21.49■■□□□ 1.03
CLSTN1-202ENST00000377298 SIL1Q9H173 461 aa21.48■■□□□ 1.03
CLSTN1-202ENST00000377298 ZNF518AQ6AHZ1 1483 aa21.48■■□□□ 1.03
CLSTN1-202ENST00000377298 EMILIN1Q9Y6C2 1016 aa21.48■■□□□ 1.03
CLSTN1-202ENST00000377298 TAF7Q15545 349 aaPredicted RBP21.48■■□□□ 1.03
CLSTN1-202ENST00000377298 SAMD1Q6SPF0 538 aaPredicted RBP21.48■■□□□ 1.03
CLSTN1-202ENST00000377298 MCM10Q7L590 875 aa21.47■■□□□ 1.03
CLSTN1-202ENST00000377298 NEK4P51957 841 aa21.47■■□□□ 1.03
CLSTN1-202ENST00000377298 PDE4CQ08493 712 aa21.46■■□□□ 1.03
CLSTN1-202ENST00000377298 CEP126Q9P2H0 1117 aa21.46■■□□□ 1.03
CLSTN1-202ENST00000377298 TTC21BQ7Z4L5 1316 aa21.46■■□□□ 1.03
CLSTN1-202ENST00000377298 ALDH1L2Q3SY69 923 aa21.45■■□□□ 1.02
CLSTN1-202ENST00000377298 CHD1LQ86WJ1 897 aa21.45■■□□□ 1.02
CLSTN1-202ENST00000377298 TMOD3Q9NYL9 352 aa21.45■■□□□ 1.02
CLSTN1-202ENST00000377298 PDCP20941 246 aa21.45■■□□□ 1.02
CLSTN1-202ENST00000377298 ZSCAN25Q6NSZ9 544 aa21.45■■□□□ 1.02
CLSTN1-202ENST00000377298 ITSN2Q9NZM3 1697 aa21.45■■□□□ 1.02
CLSTN1-202ENST00000377298 THUMPD2Q9BTF0 503 aaKnown RBP21.45■■□□□ 1.02
CLSTN1-202ENST00000377298 FOSBP53539 338 aa21.44■■□□□ 1.02
CLSTN1-202ENST00000377298 CADPS2Q86UW7 1296 aa21.44■■□□□ 1.02
CLSTN1-202ENST00000377298 NACAP1Q9BZK3 213 aa21.44■■□□□ 1.02
CLSTN1-202ENST00000377298 KRT28Q7Z3Y7 464 aa21.44■■□□□ 1.02
CLSTN1-202ENST00000377298 ADAMTS12P58397 1594 aa21.44■■□□□ 1.02
CLSTN1-202ENST00000377298 CCDC43Q96MW1 224 aaKnown RBP21.43■■□□□ 1.02
CLSTN1-202ENST00000377298 SASS6Q6UVJ0 657 aa21.43■■□□□ 1.02
CLSTN1-202ENST00000377298 UHRF1BP1LA0JNW5 1464 aa21.43■■□□□ 1.02
CLSTN1-202ENST00000377298 AACSQ86V21 672 aa21.42■■□□□ 1.02
CLSTN1-202ENST00000377298 MIS18AQ9NYP9 233 aa21.42■■□□□ 1.02
CLSTN1-202ENST00000377298 LARP1Q6PKG0 1096 aaKnown RBP21.42■■□□□ 1.02
CLSTN1-202ENST00000377298 SYCP2Q9BX26 1530 aa21.42■■□□□ 1.02
CLSTN1-202ENST00000377298 TMEM57Q8N5G2 664 aa21.42■■□□□ 1.02
CLSTN1-202ENST00000377298 DCTN1Q14203 1278 aa21.41■■□□□ 1.02
CLSTN1-202ENST00000377298 KIAA0556O60303 1618 aa21.4■■□□□ 1.02
CLSTN1-202ENST00000377298 USHBP1Q8N6Y0 703 aa21.4■■□□□ 1.02
CLSTN1-202ENST00000377298 PTCD1O75127 700 aaKnown RBP21.4■■□□□ 1.02
CLSTN1-202ENST00000377298 IPO7O95373 1038 aaKnown RBP21.4■■□□□ 1.02
CLSTN1-202ENST00000377298 ACEP12821 1306 aa21.4■■□□□ 1.02
CLSTN1-202ENST00000377298 IKQ13123 557 aaPredicted RBP21.39■■□□□ 1.02
CLSTN1-202ENST00000377298 ZNF652Q9Y2D9 606 aa21.39■■□□□ 1.02
CLSTN1-202ENST00000377298 ANKRD36BQ8N2N9 1353 aa21.39■■□□□ 1.02
CLSTN1-202ENST00000377298 CYP46A1Q9Y6A2 500 aa21.39■■□□□ 1.01
CLSTN1-202ENST00000377298 RRP12Q5JTH9 1297 aaKnown RBP21.39■■□□□ 1.01
CLSTN1-202ENST00000377298 PCMTD1Q96MG8 357 aaPredicted RBP21.39■■□□□ 1.01
CLSTN1-202ENST00000377298 ANKRD1Q15327 319 aa21.39■■□□□ 1.01
CLSTN1-202ENST00000377298 ABCC10Q5T3U5 1492 aa21.38■■□□□ 1.01
CLSTN1-202ENST00000377298 NFKBIBQ15653 356 aa21.38■■□□□ 1.01
CLSTN1-202ENST00000377298 IGHMBP2P38935 993 aaKnown RBP21.38■■□□□ 1.01
CLSTN1-202ENST00000377298 RARSP54136 660 aaKnown RBP21.38■■□□□ 1.01
CLSTN1-202ENST00000377298 HSP90AA2PQ14568 343 aaPredicted RBP21.38■■□□□ 1.01
CLSTN1-202ENST00000377298 MTMR7Q9Y216 660 aa21.38■■□□□ 1.01
CLSTN1-202ENST00000377298 DISP3Q9P2K9 1392 aa21.37■■□□□ 1.01
CLSTN1-202ENST00000377298 SSH1Q8WYL5 1049 aa21.37■■□□□ 1.01
CLSTN1-202ENST00000377298 PTPRKQ15262 1439 aa21.37■■□□□ 1.01
CLSTN1-202ENST00000377298 CTTNBP2Q8WZ74 1663 aa21.37■■□□□ 1.01
CLSTN1-202ENST00000377298 ARID3AQ99856 593 aa21.37■■□□□ 1.01
CLSTN1-202ENST00000377298 NUP160Q12769 1436 aa21.36■■□□□ 1.01
CLSTN1-202ENST00000377298 ANO8Q9HCE9 1232 aaPredicted RBP21.36■■□□□ 1.01
CLSTN1-202ENST00000377298 TRAPPC8Q9Y2L5 1435 aa21.36■■□□□ 1.01
CLSTN1-202ENST00000377298 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP21.36■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 81.1 ms