RNA–Protein interactions for RNA: ENST00000362455.1

RNU4-39P-201, Transcript of RNA, U4 small nuclear 39, pseudogene, humanhuman

BASIC

Gene RNU4-39P, Length 127 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-39P-201ENST00000362455 PPEF1O14829 653 aaPredicted RBP9.97□□□□□ -0.81
RNU4-39P-201ENST00000362455 GGCXP38435 758 aa9.97□□□□□ -0.81
RNU4-39P-201ENST00000362455 NCOA4Q13772 614 aa9.97□□□□□ -0.81
RNU4-39P-201ENST00000362455 ERFEQ4G0M1 354 aa9.97□□□□□ -0.81
RNU4-39P-201ENST00000362455 C4orf48Q5BLP8 95 aa9.97□□□□□ -0.81
RNU4-39P-201ENST00000362455 CHIC2Q9UKJ5 165 aa9.96□□□□□ -0.82
RNU4-39P-201ENST00000362455 TMEM88BA6NKF7 163 aa9.95□□□□□ -0.82
RNU4-39P-201ENST00000362455 MKRN1Q9UHC7 482 aaKnown RBP9.95□□□□□ -0.82
RNU4-39P-201ENST00000362455 ELOAQ14241 798 aaKnown RBP9.94□□□□□ -0.82
RNU4-39P-201ENST00000362455 IFFO2Q5TF58 517 aa9.94□□□□□ -0.82
RNU4-39P-201ENST00000362455 ZMIZ1Q9ULJ6 1067 aa9.94□□□□□ -0.82
RNU4-39P-201ENST00000362455 RNF223E7ERA6 249 aa9.93□□□□□ -0.82
RNU4-39P-201ENST00000362455 LZTS3O60299 673 aaPredicted RBP9.93□□□□□ -0.82
RNU4-39P-201ENST00000362455 GIGYF1O75420 1035 aaPredicted RBP9.93□□□□□ -0.82
RNU4-39P-201ENST00000362455 BRD1O95696 1058 aa9.93□□□□□ -0.82
RNU4-39P-201ENST00000362455 SH3BP2P78314 561 aa9.93□□□□□ -0.82
RNU4-39P-201ENST00000362455 MAP7D1Q3KQU3 841 aa9.93□□□□□ -0.82
RNU4-39P-201ENST00000362455 TSGA10IPQ3SY00 556 aa9.93□□□□□ -0.82
RNU4-39P-201ENST00000362455 TRAF7Q6Q0C0 670 aa9.93□□□□□ -0.82
RNU4-39P-201ENST00000362455 SLC10A4Q96EP9 437 aa9.93□□□□□ -0.82
RNU4-39P-201ENST00000362455 C1QTNF2Q9BXJ5 285 aa9.93□□□□□ -0.82
RNU4-39P-201ENST00000362455 NOVA2Q9UNW9 492 aaKnown RBP9.93□□□□□ -0.82
RNU4-39P-201ENST00000362455 FAM196BA6NMK8 535 aa9.92□□□□□ -0.82
RNU4-39P-201ENST00000362455 USP17L15C9J2P7 530 aa9.92□□□□□ -0.82
RNU4-39P-201ENST00000362455 USP17L10C9JJH3 530 aa9.92□□□□□ -0.82
RNU4-39P-201ENST00000362455 USP17L13C9JLJ4 530 aa9.92□□□□□ -0.82
RNU4-39P-201ENST00000362455 USP17L12C9JPN9 530 aa9.92□□□□□ -0.82
RNU4-39P-201ENST00000362455 USP17L11C9JVI0 530 aa9.92□□□□□ -0.82
RNU4-39P-201ENST00000362455 USP17L21D6R901 530 aa9.92□□□□□ -0.82
RNU4-39P-201ENST00000362455 USP17L18D6R9N7 530 aa9.92□□□□□ -0.82
RNU4-39P-201ENST00000362455 USP17L22D6RA61 530 aa9.92□□□□□ -0.82
RNU4-39P-201ENST00000362455 USP17L17D6RBQ6 530 aa9.92□□□□□ -0.82
RNU4-39P-201ENST00000362455 USP17L19D6RCP7 530 aa9.92□□□□□ -0.82
RNU4-39P-201ENST00000362455 USP17L20D6RJB6 530 aa9.92□□□□□ -0.82
RNU4-39P-201ENST00000362455 USP17L24Q0WX57 530 aa9.92□□□□□ -0.82
RNU4-39P-201ENST00000362455 EML3Q32P44 896 aa9.92□□□□□ -0.82
RNU4-39P-201ENST00000362455 CRTC2Q53ET0 693 aaPredicted RBP9.92□□□□□ -0.82
RNU4-39P-201ENST00000362455 STK32AQ8WU08 396 aa9.92□□□□□ -0.82
RNU4-39P-201ENST00000362455 CCDC85AQ96PX6 553 aaPredicted RBP9.92□□□□□ -0.82
RNU4-39P-201ENST00000362455 RB1CC1Q8TDY2 1594 aa9.92□□□□□ -0.82
RNU4-39P-201ENST00000362455 ATP5J2-PTCD1G3V325 749 aa9.91□□□□□ -0.82
RNU4-39P-201ENST00000362455 ZBTB24O43167 697 aaPredicted RBP9.91□□□□□ -0.82
RNU4-39P-201ENST00000362455 RASA1P20936 1047 aa9.91□□□□□ -0.82
RNU4-39P-201ENST00000362455 PLA2G2CQ5R387 149 aa9.91□□□□□ -0.82
RNU4-39P-201ENST00000362455 TMEM164Q5U3C3 297 aa9.91□□□□□ -0.82
RNU4-39P-201ENST00000362455 LARP1Q6PKG0 1096 aaKnown RBP9.91□□□□□ -0.82
RNU4-39P-201ENST00000362455 PLA2G2EQ9NZK7 142 aa9.91□□□□□ -0.82
RNU4-39P-201ENST00000362455 DOLKQ9UPQ8 538 aa9.91□□□□□ -0.82
RNU4-39P-201ENST00000362455 TRIM32Q13049 653 aa9.9□□□□□ -0.82
RNU4-39P-201ENST00000362455 PPP1R18Q6NYC8 613 aa9.9□□□□□ -0.82
RNU4-39P-201ENST00000362455 ANKLE1Q8NAG6 615 aa9.9□□□□□ -0.82
RNU4-39P-201ENST00000362455 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.9□□□□□ -0.82
RNU4-39P-201ENST00000362455 KCNA1Q09470 495 aa9.89□□□□□ -0.83
RNU4-39P-201ENST00000362455 PTK7Q13308 1070 aa9.89□□□□□ -0.83
RNU4-39P-201ENST00000362455 NBPF20Q3BBV1 942 aa9.89□□□□□ -0.83
RNU4-39P-201ENST00000362455 TRMT44Q8IYL2 757 aaKnown RBP9.89□□□□□ -0.83
RNU4-39P-201ENST00000362455 PATL2C9JE40 543 aaKnown RBP9.88□□□□□ -0.83
RNU4-39P-201ENST00000362455 OXLD1Q5BKU9 147 aa9.88□□□□□ -0.83
RNU4-39P-201ENST00000362455 RNF20Q5VTR2 975 aa9.88□□□□□ -0.83
RNU4-39P-201ENST00000362455 NOD1Q9Y239 953 aa9.88□□□□□ -0.83
RNU4-39P-201ENST00000362455 ESPNB1AK53 854 aa9.87□□□□□ -0.83
RNU4-39P-201ENST00000362455 SKOR1P84550 965 aa9.87□□□□□ -0.83
RNU4-39P-201ENST00000362455 TRIM50Q86XT4 487 aa9.87□□□□□ -0.83
RNU4-39P-201ENST00000362455 OGFOD1Q8N543 542 aa9.87□□□□□ -0.83
RNU4-39P-201ENST00000362455 GZF1Q9H116 711 aaPredicted RBP9.87□□□□□ -0.83
RNU4-39P-201ENST00000362455 CDV3Q9UKY7 258 aaKnown RBP9.87□□□□□ -0.83
RNU4-39P-201ENST00000362455 CCDC9Q9Y3X0 531 aaKnown RBP9.87□□□□□ -0.83
RNU4-39P-201ENST00000362455 CLDN10P78369 228 aa9.86□□□□□ -0.83
RNU4-39P-201ENST00000362455 CDCA7Q9BWT1 371 aaPredicted RBP9.86□□□□□ -0.83
RNU4-39P-201ENST00000362455 WNT7BP56706 349 aa9.85□□□□□ -0.83
RNU4-39P-201ENST00000362455 ANKMY2Q8IV38 441 aa9.85□□□□□ -0.83
RNU4-39P-201ENST00000362455 FAM200AQ8TCP9 573 aa9.85□□□□□ -0.83
RNU4-39P-201ENST00000362455 ZNF594Q96JF6 807 aaPredicted RBP9.85□□□□□ -0.83
RNU4-39P-201ENST00000362455 DNAAF2Q9NVR5 837 aaKnown RBP9.85□□□□□ -0.83
RNU4-39P-201ENST00000362455 PCDHB11Q9Y5F2 797 aa9.85□□□□□ -0.83
RNU4-39P-201ENST00000362455 NACADO15069 1562 aa9.84□□□□□ -0.83
RNU4-39P-201ENST00000362455 VARSP26640 1264 aaKnown RBP9.84□□□□□ -0.83
RNU4-39P-201ENST00000362455 ATP1A2P50993 1020 aa9.84□□□□□ -0.83
RNU4-39P-201ENST00000362455 SEPT12Q8IYM1 358 aa9.84□□□□□ -0.83
RNU4-39P-201ENST00000362455 RPIAP49247 311 aa9.83□□□□□ -0.84
RNU4-39P-201ENST00000362455 GTF2IP78347 998 aa9.83□□□□□ -0.84
RNU4-39P-201ENST00000362455 DPYDQ12882 1025 aa9.83□□□□□ -0.84
RNU4-39P-201ENST00000362455 KCTD15Q96SI1 283 aaPredicted RBP9.83□□□□□ -0.84
RNU4-39P-201ENST00000362455 KIAA1024Q9UPX6 916 aa9.83□□□□□ -0.84
RNU4-39P-201ENST00000362455 RAB15P59190 212 aa9.82□□□□□ -0.84
RNU4-39P-201ENST00000362455 FAM69CQ0P6D2 419 aa9.82□□□□□ -0.84
RNU4-39P-201ENST00000362455 B4GALNT3Q6L9W6 998 aa9.82□□□□□ -0.84
RNU4-39P-201ENST00000362455 LARGE2Q8N3Y3 721 aa9.82□□□□□ -0.84
RNU4-39P-201ENST00000362455 A0A0G2JS52 829 aa9.81□□□□□ -0.84
RNU4-39P-201ENST00000362455 ZBTB7BO15156 539 aaPredicted RBP9.81□□□□□ -0.84
RNU4-39P-201ENST00000362455 VASH1Q7L8A9 365 aaPredicted RBP9.81□□□□□ -0.84
RNU4-39P-201ENST00000362455 CCDC125Q86Z20 511 aa9.81□□□□□ -0.84
RNU4-39P-201ENST00000362455 MAP4K5Q9Y4K4 846 aa9.81□□□□□ -0.84
RNU4-39P-201ENST00000362455 IVNS1ABPQ9Y6Y0 642 aa9.81□□□□□ -0.84
RNU4-39P-201ENST00000362455 DKK1O94907 266 aa9.8□□□□□ -0.84
RNU4-39P-201ENST00000362455 USP4Q13107 963 aa9.8□□□□□ -0.84
RNU4-39P-201ENST00000362455 INTS6LQ5JSJ4 861 aaKnown RBP9.8□□□□□ -0.84
RNU4-39P-201ENST00000362455 TMCO4Q5TGY1 634 aa9.8□□□□□ -0.84
RNU4-39P-201ENST00000362455 SIX5Q8N196 739 aa9.8□□□□□ -0.84
RNU4-39P-201ENST00000362455 EHBP1Q8NDI1 1231 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms